Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99608 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99800 * 3 2 1 5 5 H 1.48498 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46827 * 120.00068 * 3 2 1 7 7 C 1.37877 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99616 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46707 * 179.97438 * 9 7 2 11 11 C 1.46508 * 120.00473 * 89.99806 * 10 9 7 12 12 C 1.52997 * 109.47151 * 89.99632 * 11 10 9 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.47157 * 59.99991 * 13 12 11 15 15 F 1.39900 * 109.47010 * 300.00382 * 13 12 11 16 16 F 1.39897 * 109.47422 * 180.02562 * 13 12 11 17 17 C 1.34777 * 120.00027 * 269.99904 * 10 9 7 18 18 O 1.21282 * 120.00088 * 359.97438 * 17 10 9 19 19 C 1.50704 * 120.00046 * 180.02562 * 17 10 9 20 20 H 1.08993 * 115.56367 * 34.24102 * 19 17 10 21 21 C 1.53130 * 117.51136 * 248.42436 * 19 17 10 22 22 C 1.52363 * 59.85054 * 252.56071 * 21 19 17 23 23 C 1.53788 * 121.20456 * 249.48072 * 22 21 19 24 24 C 1.54476 * 102.21007 * 190.00220 * 23 22 21 25 25 C 1.51427 * 105.23661 * 25.72012 * 24 23 22 26 26 C 1.38471 * 130.36401 * 163.16039 * 25 24 23 27 27 C 1.38094 * 120.26671 * 179.97438 * 26 25 24 28 28 C 1.38254 * 119.91232 * 359.97438 * 27 26 25 29 29 C 1.38081 * 119.93880 * 0.04569 * 28 27 26 30 30 C 1.38383 * 109.79838 * 343.14933 * 25 24 23 31 31 H 0.97006 * 120.00220 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47472 * 59.99913 * 9 7 2 33 33 H 1.09001 * 109.47130 * 299.99568 * 9 7 2 34 34 H 1.09002 * 109.46592 * 330.00361 * 11 10 9 35 35 H 1.08998 * 109.47459 * 210.00471 * 11 10 9 36 36 H 1.09002 * 109.47045 * 60.00362 * 12 11 10 37 37 H 1.09001 * 109.46922 * 300.00569 * 12 11 10 38 38 H 1.09000 * 117.51679 * 0.02562 * 21 19 17 39 39 H 1.09005 * 117.51254 * 145.11173 * 21 19 17 40 40 H 1.09003 * 110.85735 * 308.18073 * 23 22 21 41 41 H 1.09001 * 110.85489 * 71.82300 * 23 22 21 42 42 H 1.08997 * 110.29603 * 144.66640 * 24 23 22 43 43 H 1.09009 * 110.28851 * 266.78805 * 24 23 22 44 44 H 1.07999 * 119.86289 * 359.91540 * 26 25 24 45 45 H 1.07994 * 120.04206 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03016 * 180.02562 * 28 27 26 47 47 H 1.07999 * 119.86103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 2.6792 -4.1694 1.2693 12 6 1.7486 -5.3005 1.7110 13 6 2.2454 -5.8816 3.0363 14 9 2.2550 -4.8781 4.0111 15 9 3.5412 -6.3820 2.8694 16 9 1.3948 -6.9163 3.4399 17 6 2.6410 -4.1248 -1.1667 18 8 2.2465 -3.6642 -2.2170 19 6 3.6199 -5.2706 -1.1667 20 1 3.5046 -5.9876 -0.3540 21 6 5.0397 -4.9879 -1.6658 22 6 4.0774 -5.8057 -2.5183 23 6 4.2959 -7.3110 -2.7449 24 6 3.2601 -7.6294 -3.8459 25 6 3.0439 -6.3221 -4.5789 26 6 2.4799 -6.0716 -5.8185 27 6 2.3854 -4.7777 -6.2915 28 6 2.8549 -3.7273 -5.5249 29 6 3.4182 -3.9744 -4.2886 30 6 3.5148 -5.2711 -3.8116 31 1 -0.4851 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5566 0.8903 34 1 2.6869 -3.3877 2.0289 35 1 3.6887 -4.5593 1.1389 36 1 1.7408 -6.0822 0.9514 37 1 0.7391 -4.9105 1.8414 38 1 5.2656 -3.9732 -1.9937 39 1 5.8589 -5.5190 -1.1811 40 1 5.3087 -7.5076 -3.0964 41 1 4.0827 -7.8750 -1.8368 42 1 3.6525 -8.3844 -4.5271 43 1 2.3264 -7.9710 -3.3990 44 1 2.1134 -6.8917 -6.4181 45 1 1.9452 -4.5865 -7.2590 46 1 2.7816 -2.7146 -5.8928 47 1 3.7850 -3.1530 -3.6910 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084581828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = -137.519362 kcal Electronic energy + Delta-G solvation = -34384.539362 eV Core-core repulsion = 29503.750480 eV Total energy + Delta-G solvation = -4880.788882 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.08754 -47.60155 -47.54321 -40.65631 -38.84002 -36.68990 -35.59725 -33.65310 -32.95083 -31.49200 -30.32558 -28.69169 -27.76232 -25.54421 -24.95252 -23.99024 -22.58028 -22.39326 -21.82749 -20.78185 -19.49479 -18.73248 -18.53821 -18.00590 -17.38561 -16.58071 -16.45512 -16.23805 -15.26899 -15.10834 -14.73131 -14.68487 -14.56074 -14.47937 -14.35619 -14.18109 -14.00629 -13.75830 -13.71642 -13.62050 -13.42901 -13.33811 -12.78326 -12.58196 -12.41275 -12.25101 -12.10011 -11.99876 -11.69297 -11.64148 -11.47025 -11.34053 -11.15942 -10.94313 -10.89017 -10.64797 -10.44603 -10.24598 -10.22083 -10.18278 -9.72977 -9.09482 -8.48569 -8.27136 -7.96392 -7.83834 -6.09889 -4.14907 1.63635 1.80868 2.74250 3.06728 3.28585 3.33364 3.35429 3.56756 3.85419 3.97913 4.07733 4.12311 4.27300 4.38578 4.49746 4.61514 4.73384 4.87779 4.93649 5.00811 5.05680 5.23692 5.27832 5.33270 5.35012 5.39613 5.44808 5.51783 5.62960 5.68913 5.70974 5.74836 5.84513 5.95019 5.98368 6.03362 6.04512 6.18641 6.31891 6.50537 6.78153 6.93284 6.93659 7.04794 7.34670 7.37352 7.42412 7.85615 8.15724 8.26412 8.83246 9.00356 9.50603 10.98200 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.006163 B = 0.004621 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4542.209153 B = 6058.431429 C = 9656.365302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.190 4.190 13 C 0.456 3.544 14 F -0.180 7.180 15 F -0.186 7.186 16 F -0.188 7.188 17 C 0.532 3.468 18 O -0.515 6.515 19 C -0.171 4.171 20 H 0.119 0.881 21 C -0.138 4.138 22 C -0.061 4.061 23 C -0.083 4.083 24 C -0.076 4.076 25 C -0.101 4.101 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.131 4.131 29 C -0.037 4.037 30 C -0.048 4.048 31 H 0.264 0.736 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.869 -16.234 -1.903 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.128 3.872 10 N -0.324 5.324 11 C -0.012 4.012 12 C -0.229 4.229 13 C 0.402 3.598 14 F -0.162 7.162 15 F -0.168 7.168 16 F -0.169 7.169 17 C 0.319 3.681 18 O -0.390 6.390 19 C -0.192 4.192 20 H 0.137 0.863 21 C -0.175 4.175 22 C -0.062 4.062 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.101 4.101 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.149 4.149 29 C -0.055 4.055 30 C -0.048 4.048 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.469 -15.839 -2.443 17.681 hybrid contribution 0.248 0.952 0.546 1.125 sum 7.717 -14.887 -1.898 16.875 Atomic orbital electron populations 1.69915 1.05992 1.27203 1.50112 1.24913 0.94844 0.99172 0.94968 0.86581 0.79554 0.82791 0.78640 1.20208 1.21172 1.20201 1.21346 0.93280 0.90538 1.51478 0.92473 1.19319 0.87314 0.82044 0.98492 1.48132 1.46057 1.34925 1.03247 1.21323 0.95837 0.94924 0.89136 1.23492 1.04858 1.02167 0.92425 1.20556 0.75255 0.76011 0.88016 1.93208 1.96257 1.60589 1.66108 1.93167 1.39724 1.88202 1.95662 1.93177 1.70891 1.60624 1.92225 1.19462 0.81705 0.82832 0.84148 1.90729 1.57230 1.61055 1.30032 1.22472 0.97718 1.00840 0.98210 0.86284 1.22940 0.91085 1.01848 1.01652 1.20262 1.02196 0.94691 0.89029 1.21824 0.99424 0.92027 0.98790 1.20986 0.99245 0.94738 0.96341 1.20418 0.99532 0.95497 0.94613 1.20378 1.01879 0.96619 0.95398 1.20922 1.00460 0.92667 0.99672 1.20982 1.00154 0.98789 0.94952 1.20564 0.95762 0.95580 0.93591 1.19341 0.99298 0.93201 0.93009 0.92611 0.93633 0.95055 0.88576 0.90111 0.87577 0.86554 0.87912 0.87599 0.90258 0.90571 0.90970 0.90490 0.87034 0.86597 0.86394 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.27 9.39 -34.44 -0.32 -14.59 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.25 6.06 5.16 -5.20 -0.03 6.03 16 10 N -0.59 -11.47 2.46 -175.06 -0.43 -11.90 16 11 C 0.11 1.68 4.80 -4.04 -0.02 1.66 16 12 C -0.19 -2.32 5.47 -26.73 -0.15 -2.47 16 13 C 0.46 5.41 3.16 37.16 0.12 5.52 16 14 F -0.18 -2.39 16.80 2.25 0.04 -2.35 16 15 F -0.19 -2.15 16.80 2.25 0.04 -2.11 16 16 F -0.19 -2.27 17.32 2.25 0.04 -2.23 16 17 C 0.53 10.18 7.45 -10.98 -0.08 10.10 16 18 O -0.51 -11.75 11.39 5.56 0.06 -11.69 16 19 C -0.17 -2.43 4.66 -92.01 -0.43 -2.86 16 20 H 0.12 1.39 6.48 -51.93 -0.34 1.05 16 21 C -0.14 -1.74 9.93 -26.99 -0.27 -2.00 16 22 C -0.06 -0.83 2.34 -155.82 -0.36 -1.19 16 23 C -0.08 -0.86 6.85 -25.55 -0.17 -1.03 16 24 C -0.08 -0.84 6.77 -26.75 -0.18 -1.02 16 25 C -0.10 -1.44 6.14 -104.13 -0.64 -2.08 16 26 C -0.12 -1.72 10.03 -39.55 -0.40 -2.12 16 27 C -0.12 -1.70 10.05 -39.63 -0.40 -2.10 16 28 C -0.13 -2.10 10.04 -39.63 -0.40 -2.50 16 29 C -0.04 -0.65 7.45 -39.54 -0.29 -0.94 16 30 C -0.05 -0.77 4.86 -104.41 -0.51 -1.28 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.10 1.52 7.73 -51.93 -0.40 1.12 16 35 H 0.08 1.03 6.30 -51.93 -0.33 0.70 16 36 H 0.11 1.15 7.45 -51.93 -0.39 0.76 16 37 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.10 1.44 8.13 -51.93 -0.42 1.02 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.12 2.27 7.21 -52.49 -0.38 1.90 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -31.49 396.84 -9.59 -41.08 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.41 Total: 3.19 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -4.63 Total: -11.21 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.31 Total: -37.02 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.69 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.49 -9.59 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.438 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds