Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99608 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99800 * 3 2 1 5 5 H 1.48498 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46827 * 120.00068 * 3 2 1 7 7 C 1.37877 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99616 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46707 * 179.97438 * 9 7 2 11 11 C 1.46508 * 120.00473 * 89.99806 * 10 9 7 12 12 C 1.52997 * 109.47151 * 89.99632 * 11 10 9 13 13 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.47157 * 59.99991 * 13 12 11 15 15 F 1.39900 * 109.47010 * 300.00382 * 13 12 11 16 16 F 1.39897 * 109.47422 * 180.02562 * 13 12 11 17 17 C 1.34777 * 120.00027 * 269.99904 * 10 9 7 18 18 O 1.21282 * 120.00088 * 359.97438 * 17 10 9 19 19 C 1.50704 * 120.00046 * 180.02562 * 17 10 9 20 20 H 1.08993 * 115.56367 * 34.24102 * 19 17 10 21 21 C 1.53130 * 117.51136 * 248.42436 * 19 17 10 22 22 C 1.52363 * 59.85054 * 252.56071 * 21 19 17 23 23 C 1.53788 * 121.20456 * 249.48072 * 22 21 19 24 24 C 1.54476 * 102.21007 * 190.00220 * 23 22 21 25 25 C 1.51427 * 105.23661 * 25.72012 * 24 23 22 26 26 C 1.38471 * 130.36401 * 163.16039 * 25 24 23 27 27 C 1.38094 * 120.26671 * 179.97438 * 26 25 24 28 28 C 1.38254 * 119.91232 * 359.97438 * 27 26 25 29 29 C 1.38081 * 119.93880 * 0.04569 * 28 27 26 30 30 C 1.38383 * 109.79838 * 343.14933 * 25 24 23 31 31 H 0.97006 * 120.00220 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47472 * 59.99913 * 9 7 2 33 33 H 1.09001 * 109.47130 * 299.99568 * 9 7 2 34 34 H 1.09002 * 109.46592 * 330.00361 * 11 10 9 35 35 H 1.08998 * 109.47459 * 210.00471 * 11 10 9 36 36 H 1.09002 * 109.47045 * 60.00362 * 12 11 10 37 37 H 1.09001 * 109.46922 * 300.00569 * 12 11 10 38 38 H 1.09000 * 117.51679 * 0.02562 * 21 19 17 39 39 H 1.09005 * 117.51254 * 145.11173 * 21 19 17 40 40 H 1.09003 * 110.85735 * 308.18073 * 23 22 21 41 41 H 1.09001 * 110.85489 * 71.82300 * 23 22 21 42 42 H 1.08997 * 110.29603 * 144.66640 * 24 23 22 43 43 H 1.09009 * 110.28851 * 266.78805 * 24 23 22 44 44 H 1.07999 * 119.86289 * 359.91540 * 26 25 24 45 45 H 1.07994 * 120.04206 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03016 * 180.02562 * 28 27 26 47 47 H 1.07999 * 119.86103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 2.6792 -4.1694 1.2693 12 6 1.7486 -5.3005 1.7110 13 6 2.2454 -5.8816 3.0363 14 9 2.2550 -4.8781 4.0111 15 9 3.5412 -6.3820 2.8694 16 9 1.3948 -6.9163 3.4399 17 6 2.6410 -4.1248 -1.1667 18 8 2.2465 -3.6642 -2.2170 19 6 3.6199 -5.2706 -1.1667 20 1 3.5046 -5.9876 -0.3540 21 6 5.0397 -4.9879 -1.6658 22 6 4.0774 -5.8057 -2.5183 23 6 4.2959 -7.3110 -2.7449 24 6 3.2601 -7.6294 -3.8459 25 6 3.0439 -6.3221 -4.5789 26 6 2.4799 -6.0716 -5.8185 27 6 2.3854 -4.7777 -6.2915 28 6 2.8549 -3.7273 -5.5249 29 6 3.4182 -3.9744 -4.2886 30 6 3.5148 -5.2711 -3.8116 31 1 -0.4851 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6241 -2.5566 0.8903 34 1 2.6869 -3.3877 2.0289 35 1 3.6887 -4.5593 1.1389 36 1 1.7408 -6.0822 0.9514 37 1 0.7391 -4.9105 1.8414 38 1 5.2656 -3.9732 -1.9937 39 1 5.8589 -5.5190 -1.1811 40 1 5.3087 -7.5076 -3.0964 41 1 4.0827 -7.8750 -1.8368 42 1 3.6525 -8.3844 -4.5271 43 1 2.3264 -7.9710 -3.3990 44 1 2.1134 -6.8917 -6.4181 45 1 1.9452 -4.5865 -7.2590 46 1 2.7816 -2.7146 -5.8928 47 1 3.7850 -3.1530 -3.6910 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084581828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = -152.369599 kcal Electronic energy + Delta-G solvation = -34385.183317 eV Core-core repulsion = 29503.750480 eV Total energy + Delta-G solvation = -4881.432837 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.05482 -48.55754 -48.51957 -41.81371 -40.20038 -37.85038 -37.06402 -35.07092 -34.55168 -32.89894 -31.49420 -29.77014 -29.53324 -26.72347 -26.31423 -25.34296 -23.89975 -23.47192 -23.11420 -21.84554 -20.66595 -19.86496 -19.50720 -19.18355 -18.70080 -18.24666 -17.91498 -17.53009 -16.77301 -16.21403 -16.15862 -15.79004 -15.66307 -15.63355 -15.49376 -15.44237 -14.98517 -14.93411 -14.74078 -14.69336 -14.62084 -14.52349 -14.22433 -13.93145 -13.66491 -13.59008 -13.37741 -13.22955 -13.02459 -12.88801 -12.70495 -12.60703 -12.56919 -12.38339 -12.35063 -12.11713 -11.94848 -11.78166 -11.53739 -11.25795 -11.19989 -10.65108 -10.55504 -9.53322 -9.43170 -9.13369 -8.23854 -6.37405 0.49358 0.63167 1.34579 1.37575 1.44734 1.65400 1.76533 2.21975 2.39395 2.74605 2.91820 3.05455 3.07602 3.11383 3.17304 3.44956 3.63585 3.68951 3.80711 3.89530 3.96756 4.00417 4.18058 4.23234 4.28960 4.34735 4.52616 4.57004 4.59802 4.65312 4.75288 4.79828 4.85369 4.90788 4.94120 5.03267 5.05950 5.19593 5.23565 5.25923 5.32488 5.40682 5.53763 5.65326 5.75320 5.81373 5.87463 6.05223 6.24146 6.68106 6.75136 7.28582 7.50715 8.82936 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.006163 B = 0.004621 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4542.209153 B = 6058.431429 C = 9656.365302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.265 3.735 10 N -0.598 5.598 11 C 0.111 3.889 12 C -0.181 4.181 13 C 0.467 3.533 14 F -0.190 7.190 15 F -0.179 7.179 16 F -0.186 7.186 17 C 0.520 3.480 18 O -0.562 6.562 19 C -0.174 4.174 20 H 0.156 0.844 21 C -0.127 4.127 22 C -0.066 4.066 23 C -0.073 4.073 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.157 4.157 29 C -0.065 4.065 30 C -0.072 4.072 31 H 0.266 0.734 32 H -0.001 1.001 33 H 0.024 0.976 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.115 0.885 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 -19.409 -1.336 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.144 3.856 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.221 4.221 13 C 0.412 3.588 14 F -0.171 7.171 15 F -0.160 7.160 16 F -0.167 7.167 17 C 0.309 3.691 18 O -0.441 6.441 19 C -0.194 4.194 20 H 0.173 0.827 21 C -0.164 4.164 22 C -0.066 4.066 23 C -0.110 4.110 24 C -0.112 4.112 25 C -0.108 4.108 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.175 4.175 29 C -0.083 4.083 30 C -0.072 4.072 31 H 0.075 0.925 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.133 0.867 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.357 -19.044 -1.842 21.299 hybrid contribution -0.364 1.959 0.305 2.016 sum 8.992 -17.085 -1.537 19.368 Atomic orbital electron populations 1.70032 1.07450 1.28089 1.51086 1.25766 0.95687 1.02750 0.94578 0.85580 0.78413 0.78624 0.78892 1.20519 1.20480 1.18532 1.21643 0.93165 0.91929 1.51023 0.92972 1.18700 0.87707 0.83450 0.95708 1.48031 1.45357 1.33967 1.05464 1.21491 0.97808 0.95363 0.86600 1.23343 1.03607 1.01746 0.93365 1.20299 0.75428 0.75763 0.87280 1.93198 1.96314 1.61121 1.66498 1.93183 1.39186 1.88056 1.95577 1.93185 1.70946 1.60449 1.92151 1.20433 0.81870 0.83671 0.83083 1.90727 1.58846 1.62794 1.31690 1.22433 0.97165 0.99532 1.00301 0.82701 1.23060 0.91256 1.01047 1.01015 1.20549 1.01738 0.97001 0.87342 1.21927 1.00261 0.89076 0.99723 1.21106 1.00005 0.93277 0.96775 1.20983 0.98280 0.96894 0.94619 1.20818 1.00998 0.97134 0.95709 1.21234 0.99923 0.92570 1.00417 1.21144 1.01328 0.99644 0.95349 1.20483 0.97694 0.95921 0.94199 1.19731 0.99814 0.92812 0.94821 0.92501 0.98293 0.95849 0.89961 0.87218 0.85413 0.87475 0.90624 0.83353 0.88283 0.87843 0.88265 0.90004 0.83924 0.84123 0.86694 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.27 13.81 5.16 85.63 0.44 14.25 16 10 N -0.60 -23.78 2.46 -826.15 -2.03 -25.81 16 11 C 0.11 3.20 4.80 86.38 0.41 3.61 16 12 C -0.18 -4.13 5.47 30.59 0.17 -3.96 16 13 C 0.47 9.97 3.16 71.98 0.23 10.20 16 14 F -0.19 -4.76 16.80 44.97 0.76 -4.00 16 15 F -0.18 -3.50 16.80 44.97 0.76 -2.74 16 16 F -0.19 -4.04 17.32 44.97 0.78 -3.26 16 17 C 0.52 20.43 7.45 87.66 0.65 21.09 16 18 O -0.56 -27.44 11.39 -3.03 -0.03 -27.47 16 19 C -0.17 -4.59 4.66 -11.69 -0.05 -4.64 16 20 H 0.16 2.92 6.48 -2.39 -0.02 2.90 16 21 C -0.13 -2.93 9.93 30.43 0.30 -2.63 16 22 C -0.07 -1.64 2.34 -53.03 -0.12 -1.76 16 23 C -0.07 -1.15 6.85 31.36 0.21 -0.94 16 24 C -0.07 -1.36 6.77 30.58 0.21 -1.15 16 25 C -0.11 -2.92 6.14 -19.54 -0.12 -3.04 16 26 C -0.13 -3.36 10.03 22.29 0.22 -3.14 16 27 C -0.12 -3.54 10.05 22.24 0.22 -3.31 16 28 C -0.16 -5.42 10.04 22.24 0.22 -5.20 16 29 C -0.06 -2.45 7.45 22.30 0.17 -2.29 16 30 C -0.07 -2.30 4.86 -19.72 -0.10 -2.40 16 31 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 33 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 34 H 0.08 2.60 7.73 -2.39 -0.02 2.58 16 35 H 0.11 2.52 6.30 -2.39 -0.02 2.50 16 36 H 0.13 2.38 7.45 -2.39 -0.02 2.37 16 37 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 39 H 0.15 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 46 H 0.11 3.79 8.06 -2.91 -0.02 3.77 16 47 H 0.08 3.66 7.21 -2.91 -0.02 3.64 16 Total: -1.00 -74.64 396.84 7.31 -67.34 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.00 Total: 18.86 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.77 Total: -14.40 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.74 Total: -81.23 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.03 Total: -27.47 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 2.29 Total: -10.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -74.64 7.31 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.032 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds