Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48508 * 109.47412 * 270.00416 * 3 2 1 5 5 H 1.48498 * 109.47555 * 30.00672 * 3 2 1 6 6 H 1.48506 * 109.47249 * 150.00667 * 3 2 1 7 7 C 1.37875 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99734 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46642 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99972 * 269.99991 * 10 9 7 12 12 C 1.53000 * 109.46749 * 270.00161 * 11 10 9 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.47258 * 59.99980 * 13 12 11 15 15 F 1.39898 * 109.47481 * 180.02562 * 13 12 11 16 16 F 1.39901 * 109.47130 * 300.00494 * 13 12 11 17 17 C 1.34773 * 119.99950 * 90.00431 * 10 9 7 18 18 O 1.21291 * 120.00022 * 359.97438 * 17 10 9 19 19 C 1.50700 * 120.00251 * 179.97438 * 17 10 9 20 20 H 1.09002 * 115.55962 * 306.83667 * 19 17 10 21 21 C 1.53129 * 117.55419 * 161.02431 * 19 17 10 22 22 C 1.52369 * 59.85479 * 252.57885 * 21 19 17 23 23 C 1.53780 * 121.20911 * 110.51155 * 22 21 19 24 24 C 1.54476 * 102.21099 * 170.01446 * 23 22 21 25 25 C 1.51424 * 105.23107 * 334.26256 * 24 23 22 26 26 C 1.38465 * 130.36581 * 196.82265 * 25 24 23 27 27 C 1.38096 * 120.26635 * 180.35912 * 26 25 24 28 28 C 1.38258 * 119.91284 * 359.45619 * 27 26 25 29 29 C 1.38076 * 119.93590 * 0.52790 * 28 27 26 30 30 C 1.38388 * 109.79722 * 16.88606 * 25 24 23 31 31 H 0.97005 * 119.99986 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46706 * 60.00001 * 9 7 2 33 33 H 1.08999 * 109.47091 * 300.00107 * 9 7 2 34 34 H 1.08993 * 109.46947 * 30.00413 * 11 10 9 35 35 H 1.09002 * 109.46798 * 150.00636 * 11 10 9 36 36 H 1.08993 * 109.47601 * 299.99851 * 12 11 10 37 37 H 1.09002 * 109.47083 * 60.00650 * 12 11 10 38 38 H 1.09005 * 117.50937 * 145.13228 * 21 19 17 39 39 H 1.09002 * 117.51313 * 0.02786 * 21 19 17 40 40 H 1.09007 * 110.85207 * 51.83544 * 23 22 21 41 41 H 1.08997 * 111.03377 * 288.27447 * 23 22 21 42 42 H 1.09002 * 110.29319 * 215.32279 * 24 23 22 43 43 H 1.09000 * 110.29347 * 93.19850 * 24 23 22 44 44 H 1.07998 * 119.86320 * 0.07843 * 26 25 24 45 45 H 1.08008 * 120.04454 * 179.71892 * 27 26 25 46 46 H 1.08001 * 120.02862 * 180.25226 * 28 27 26 47 47 H 1.08002 * 119.85533 * 179.72572 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2445 -3.2656 1.2678 12 6 5.6897 -3.0250 1.7088 13 6 5.9454 -3.7465 3.0336 14 9 5.7312 -5.1189 2.8662 15 9 7.2666 -3.5261 3.4372 16 9 5.0719 -3.2539 4.0090 17 6 4.2241 -3.2108 -1.1681 18 8 4.0212 -2.6394 -2.2186 19 6 4.7269 -4.6314 -1.1681 20 1 5.6261 -4.8120 -0.5790 21 6 4.5464 -5.4468 -2.4516 22 6 3.6888 -5.7458 -1.2282 23 6 2.1835 -5.4316 -1.2142 24 6 1.7162 -6.1291 0.0825 25 6 2.7138 -7.2440 0.3162 26 6 2.6333 -8.3642 1.1261 27 6 3.6861 -9.2558 1.1874 28 6 4.8210 -9.0359 0.4290 29 6 4.9037 -7.9198 -0.3797 30 6 3.8517 -7.0208 -0.4391 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6803 0.8889 33 1 3.8746 -0.6799 -0.8911 34 1 3.5640 -2.8813 2.0275 35 1 4.0775 -4.3348 1.1377 36 1 6.3702 -3.4093 0.9491 37 1 5.8567 -1.9557 1.8389 38 1 5.3270 -6.1636 -2.7067 39 1 4.0642 -4.9554 -3.2967 40 1 1.6894 -5.8611 -2.0857 41 1 2.0087 -4.3570 -1.1614 42 1 0.7148 -6.5391 -0.0486 43 1 1.7319 -5.4270 0.9162 44 1 1.7455 -8.5389 1.7156 45 1 3.6213 -10.1261 1.8239 46 1 5.6437 -9.7342 0.4724 47 1 5.7926 -7.7470 -0.9682 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084581829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -140.890951 kcal Electronic energy + Delta-G solvation = -35070.763496 eV Core-core repulsion = 30189.828411 eV Total energy + Delta-G solvation = -4880.935085 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09788 -47.61243 -47.55064 -40.78750 -39.15869 -36.76550 -35.73352 -33.76149 -32.92360 -31.62609 -30.69452 -28.82403 -28.40874 -25.60577 -25.04399 -24.02980 -22.69868 -22.44942 -21.52061 -20.98671 -19.70192 -18.76493 -18.54252 -17.86506 -17.49369 -16.86244 -16.58532 -16.46732 -15.64225 -15.25508 -15.15416 -14.82441 -14.65217 -14.49685 -14.29799 -14.04787 -14.01892 -13.76709 -13.73288 -13.65139 -13.52416 -13.45573 -13.08394 -12.60934 -12.51275 -12.49381 -12.12835 -12.07101 -11.86658 -11.70171 -11.56716 -11.39144 -11.26791 -11.06457 -10.98751 -10.77036 -10.61494 -10.32141 -10.22702 -10.17176 -9.62706 -9.23029 -8.80321 -8.64801 -8.37156 -7.95392 -6.14621 -4.14137 1.26351 1.36574 2.70477 3.00259 3.24405 3.29704 3.32275 3.44731 3.64633 3.88274 4.00147 4.04875 4.16257 4.33892 4.43930 4.46647 4.67532 4.85298 4.94096 4.95239 4.97096 4.98352 5.04307 5.15904 5.20855 5.33960 5.34606 5.47717 5.56637 5.62606 5.64884 5.70670 5.80329 5.91691 5.97586 6.08093 6.11517 6.14395 6.27887 6.30496 6.46334 6.50373 6.56686 6.68881 6.82336 6.96257 7.15670 7.52119 8.03749 8.38494 8.78848 8.88925 9.45099 10.98329 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.008501 B = 0.004228 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3292.775080 B = 6620.520250 C = 8226.138368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.214 3.786 10 N -0.585 5.585 11 C 0.113 3.887 12 C -0.190 4.190 13 C 0.456 3.544 14 F -0.182 7.182 15 F -0.188 7.188 16 F -0.180 7.180 17 C 0.542 3.458 18 O -0.527 6.527 19 C -0.167 4.167 20 H 0.120 0.880 21 C -0.131 4.131 22 C -0.066 4.066 23 C -0.090 4.090 24 C -0.082 4.082 25 C -0.081 4.081 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.103 4.103 30 C -0.059 4.059 31 H 0.265 0.735 32 H 0.030 0.970 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.433 -15.967 3.876 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.094 3.906 10 N -0.315 5.315 11 C -0.012 4.012 12 C -0.230 4.230 13 C 0.401 3.599 14 F -0.163 7.163 15 F -0.169 7.169 16 F -0.162 7.162 17 C 0.328 3.672 18 O -0.404 6.404 19 C -0.188 4.188 20 H 0.138 0.862 21 C -0.169 4.169 22 C -0.066 4.066 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.137 4.137 28 C -0.142 4.142 29 C -0.121 4.121 30 C -0.059 4.059 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.135 -15.509 3.339 19.382 hybrid contribution 0.580 0.758 0.470 1.064 sum 11.715 -14.751 3.809 19.218 Atomic orbital electron populations 1.69884 1.06154 1.27042 1.50121 1.24826 0.94731 0.98846 0.94358 0.86901 0.80202 0.84002 0.78868 1.19909 1.21033 1.19107 1.21261 0.88888 0.94898 1.51772 0.90506 1.19757 0.96069 0.77257 0.97547 1.47751 1.64210 1.15850 1.03684 1.21362 0.92333 0.98905 0.88628 1.23470 1.02957 1.03830 0.92748 1.20507 0.73758 0.77774 0.87843 1.93202 1.94509 1.33004 1.95612 1.93175 1.36997 1.94558 1.92214 1.93206 1.69461 1.87462 1.66044 1.19359 0.77725 0.86220 0.83883 1.90691 1.51459 1.67320 1.30881 1.22405 1.01174 0.90947 1.04291 0.86246 1.22946 1.01586 1.00675 0.91659 1.20326 0.93675 0.92153 1.00479 1.21899 0.90874 1.02506 0.97463 1.21095 0.97427 0.94757 0.98576 1.20669 0.96211 0.95301 0.95951 1.20616 0.99082 0.93959 0.99091 1.21010 0.93734 0.99358 0.99614 1.20953 0.98217 0.97632 0.97428 1.20564 0.97910 0.94228 0.99410 1.19684 0.94533 0.94289 0.97377 0.92499 0.95162 0.94294 0.88341 0.89592 0.87531 0.86699 0.88077 0.86975 0.90327 0.88993 0.90443 0.89534 0.86245 0.86116 0.86131 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.78 27.47 -169.99 -4.67 16.12 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.53 -14.27 9.94 -34.44 -0.34 -14.61 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.21 4.85 4.23 -5.19 -0.02 4.82 16 10 N -0.58 -10.94 2.46 -175.05 -0.43 -11.37 16 11 C 0.11 1.68 4.96 -4.04 -0.02 1.66 16 12 C -0.19 -2.28 5.58 -26.73 -0.15 -2.43 16 13 C 0.46 5.50 3.16 37.16 0.12 5.62 16 14 F -0.18 -2.28 16.80 2.25 0.04 -2.25 16 15 F -0.19 -2.27 17.32 2.25 0.04 -2.23 16 16 F -0.18 -2.40 16.80 2.25 0.04 -2.36 16 17 C 0.54 10.18 5.96 -10.99 -0.07 10.12 16 18 O -0.53 -12.12 16.02 5.55 0.09 -12.03 16 19 C -0.17 -2.40 4.25 -92.00 -0.39 -2.79 16 20 H 0.12 1.46 7.35 -51.93 -0.38 1.08 16 21 C -0.13 -1.72 9.74 -26.99 -0.26 -1.98 16 22 C -0.07 -0.90 2.15 -155.82 -0.33 -1.24 16 23 C -0.09 -1.35 6.67 -25.55 -0.17 -1.53 16 24 C -0.08 -1.10 6.77 -26.75 -0.18 -1.28 16 25 C -0.08 -1.04 6.14 -104.13 -0.64 -1.68 16 26 C -0.11 -1.23 10.03 -39.55 -0.40 -1.63 16 27 C -0.12 -1.20 10.05 -39.63 -0.40 -1.60 16 28 C -0.12 -1.25 10.04 -39.63 -0.40 -1.64 16 29 C -0.10 -1.14 9.98 -39.54 -0.39 -1.54 16 30 C -0.06 -0.75 5.93 -104.41 -0.62 -1.36 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 34 H 0.10 1.56 7.73 -51.93 -0.40 1.15 16 35 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 36 H 0.11 1.12 7.40 -51.93 -0.38 0.73 16 37 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 39 H 0.11 1.62 7.81 -51.93 -0.41 1.22 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.71 6.87 -51.93 -0.36 1.35 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.09 8.05 -52.49 -0.42 0.67 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -31.61 399.43 -9.25 -40.86 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.38 Total: 4.10 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.77 Total: -11.08 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.34 Total: -37.14 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.61 -9.25 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.034 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds