Wall clock time and date at job start Tue Mar 31 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48508 * 109.47412 * 270.00416 * 3 2 1 5 5 H 1.48498 * 109.47555 * 30.00672 * 3 2 1 6 6 H 1.48506 * 109.47249 * 150.00667 * 3 2 1 7 7 C 1.37875 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99734 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46642 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99972 * 269.99991 * 10 9 7 12 12 C 1.53000 * 109.46749 * 270.00161 * 11 10 9 13 13 C 1.53000 * 109.46912 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.47258 * 59.99980 * 13 12 11 15 15 F 1.39898 * 109.47481 * 180.02562 * 13 12 11 16 16 F 1.39901 * 109.47130 * 300.00494 * 13 12 11 17 17 C 1.34773 * 119.99950 * 90.00431 * 10 9 7 18 18 O 1.21291 * 120.00022 * 359.97438 * 17 10 9 19 19 C 1.50700 * 120.00251 * 179.97438 * 17 10 9 20 20 H 1.09002 * 115.55962 * 306.83667 * 19 17 10 21 21 C 1.53129 * 117.55419 * 161.02431 * 19 17 10 22 22 C 1.52369 * 59.85479 * 252.57885 * 21 19 17 23 23 C 1.53780 * 121.20911 * 110.51155 * 22 21 19 24 24 C 1.54476 * 102.21099 * 170.01446 * 23 22 21 25 25 C 1.51424 * 105.23107 * 334.26256 * 24 23 22 26 26 C 1.38465 * 130.36581 * 196.82265 * 25 24 23 27 27 C 1.38096 * 120.26635 * 180.35912 * 26 25 24 28 28 C 1.38258 * 119.91284 * 359.45619 * 27 26 25 29 29 C 1.38076 * 119.93590 * 0.52790 * 28 27 26 30 30 C 1.38388 * 109.79722 * 16.88606 * 25 24 23 31 31 H 0.97005 * 119.99986 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46706 * 60.00001 * 9 7 2 33 33 H 1.08999 * 109.47091 * 300.00107 * 9 7 2 34 34 H 1.08993 * 109.46947 * 30.00413 * 11 10 9 35 35 H 1.09002 * 109.46798 * 150.00636 * 11 10 9 36 36 H 1.08993 * 109.47601 * 299.99851 * 12 11 10 37 37 H 1.09002 * 109.47083 * 60.00650 * 12 11 10 38 38 H 1.09005 * 117.50937 * 145.13228 * 21 19 17 39 39 H 1.09002 * 117.51313 * 0.02786 * 21 19 17 40 40 H 1.09007 * 110.85207 * 51.83544 * 23 22 21 41 41 H 1.08997 * 111.03377 * 288.27447 * 23 22 21 42 42 H 1.09002 * 110.29319 * 215.32279 * 24 23 22 43 43 H 1.09000 * 110.29347 * 93.19850 * 24 23 22 44 44 H 1.07998 * 119.86320 * 0.07843 * 26 25 24 45 45 H 1.08008 * 120.04454 * 179.71892 * 27 26 25 46 46 H 1.08001 * 120.02862 * 180.25226 * 28 27 26 47 47 H 1.08002 * 119.85533 * 179.72572 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2445 -3.2656 1.2678 12 6 5.6897 -3.0250 1.7088 13 6 5.9454 -3.7465 3.0336 14 9 5.7312 -5.1189 2.8662 15 9 7.2666 -3.5261 3.4372 16 9 5.0719 -3.2539 4.0090 17 6 4.2241 -3.2108 -1.1681 18 8 4.0212 -2.6394 -2.2186 19 6 4.7269 -4.6314 -1.1681 20 1 5.6261 -4.8120 -0.5790 21 6 4.5464 -5.4468 -2.4516 22 6 3.6888 -5.7458 -1.2282 23 6 2.1835 -5.4316 -1.2142 24 6 1.7162 -6.1291 0.0825 25 6 2.7138 -7.2440 0.3162 26 6 2.6333 -8.3642 1.1261 27 6 3.6861 -9.2558 1.1874 28 6 4.8210 -9.0359 0.4290 29 6 4.9037 -7.9198 -0.3797 30 6 3.8517 -7.0208 -0.4391 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6803 0.8889 33 1 3.8746 -0.6799 -0.8911 34 1 3.5640 -2.8813 2.0275 35 1 4.0775 -4.3348 1.1377 36 1 6.3702 -3.4093 0.9491 37 1 5.8567 -1.9557 1.8389 38 1 5.3270 -6.1636 -2.7067 39 1 4.0642 -4.9554 -3.2967 40 1 1.6894 -5.8611 -2.0857 41 1 2.0087 -4.3570 -1.1614 42 1 0.7148 -6.5391 -0.0486 43 1 1.7319 -5.4270 0.9162 44 1 1.7455 -8.5389 1.7156 45 1 3.6213 -10.1261 1.8239 46 1 5.6437 -9.7342 0.4724 47 1 5.7926 -7.7470 -0.9682 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084581829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:31 Heat of formation + Delta-G solvation = -156.321231 kcal Electronic energy + Delta-G solvation = -35071.432604 eV Core-core repulsion = 30189.828411 eV Total energy + Delta-G solvation = -4881.604193 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.08100 -48.58107 -48.55088 -41.92367 -40.42859 -37.87228 -37.20032 -35.00797 -34.69486 -33.07193 -31.56430 -30.20909 -29.79126 -26.81086 -26.29344 -25.45061 -23.69589 -23.60023 -22.98483 -21.90957 -20.80113 -19.92549 -19.53009 -19.21014 -19.00484 -18.33155 -17.94680 -17.49307 -17.12969 -16.33683 -16.19718 -16.06278 -15.83861 -15.68099 -15.47876 -15.28648 -15.00542 -14.96378 -14.83291 -14.74374 -14.69653 -14.59366 -14.45093 -14.01020 -13.74648 -13.61230 -13.53348 -13.24846 -13.19119 -13.03260 -12.75518 -12.70548 -12.53966 -12.47348 -12.33498 -12.07761 -11.98891 -11.72934 -11.69401 -11.37354 -11.27078 -10.81731 -10.76649 -9.64956 -9.59815 -9.29961 -8.32004 -6.36725 0.39706 0.53511 1.33215 1.36897 1.44177 1.57187 1.68167 2.13163 2.31392 2.65613 2.86374 2.99781 3.03357 3.08359 3.08954 3.31585 3.49313 3.57121 3.72324 3.81875 3.87695 3.89868 4.03016 4.22186 4.25771 4.30217 4.40577 4.41770 4.51205 4.54048 4.69820 4.71117 4.75378 4.83104 4.87478 4.92340 4.93400 4.97572 5.06452 5.09611 5.15566 5.30084 5.44278 5.52279 5.61418 5.67247 5.80843 6.15609 6.23538 6.53579 6.65465 7.20366 7.33593 8.84503 Molecular weight = 367.15amu Principal moments of inertia in cm(-1) A = 0.008501 B = 0.004228 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3292.775080 B = 6620.520250 C = 8226.138368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.235 1.235 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.222 3.778 10 N -0.587 5.587 11 C 0.113 3.887 12 C -0.182 4.182 13 C 0.464 3.536 14 F -0.182 7.182 15 F -0.183 7.183 16 F -0.189 7.189 17 C 0.537 3.463 18 O -0.579 6.579 19 C -0.168 4.168 20 H 0.152 0.848 21 C -0.121 4.121 22 C -0.061 4.061 23 C -0.094 4.094 24 C -0.078 4.078 25 C -0.099 4.099 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.104 4.104 30 C -0.069 4.069 31 H 0.267 0.733 32 H 0.053 0.947 33 H 0.025 0.975 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.972 -17.937 4.954 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.158 1.158 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.100 3.900 10 N -0.317 5.317 11 C -0.011 4.011 12 C -0.221 4.221 13 C 0.409 3.591 14 F -0.164 7.164 15 F -0.165 7.165 16 F -0.171 7.171 17 C 0.326 3.674 18 O -0.459 6.459 19 C -0.189 4.189 20 H 0.169 0.831 21 C -0.158 4.158 22 C -0.061 4.061 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.099 4.099 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.139 4.139 29 C -0.122 4.122 30 C -0.069 4.069 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.168 0.832 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.702 -17.516 4.460 23.299 hybrid contribution -0.629 1.236 0.138 1.393 sum 14.073 -16.280 4.598 22.006 Atomic orbital electron populations 1.70044 1.08170 1.28156 1.51983 1.25771 0.95563 1.03045 0.93998 0.85824 0.80105 0.78788 0.78925 1.20268 1.20429 1.15794 1.21502 0.91360 0.93275 1.50876 0.94881 1.19436 0.93038 0.79913 0.97600 1.47714 1.63805 1.14776 1.05380 1.21427 0.94354 0.98813 0.86469 1.23362 1.00787 1.04621 0.93337 1.20368 0.73694 0.77596 0.87431 1.93203 1.94525 1.33088 1.95581 1.93187 1.36624 1.94534 1.92143 1.93196 1.69848 1.87588 1.66458 1.20129 0.76568 0.87744 0.82921 1.90654 1.53765 1.68878 1.32624 1.22364 1.02362 0.87935 1.06222 0.83062 1.23057 1.01951 1.00393 0.90427 1.20231 0.92106 0.92572 1.01228 1.21791 0.93146 0.99568 0.98614 1.20974 0.98477 0.95048 0.96979 1.20611 0.96073 0.95769 0.97495 1.20845 1.00233 0.93668 0.98925 1.21383 0.93120 0.99572 0.99449 1.21357 0.98861 0.97475 0.96212 1.20845 0.97906 0.93875 0.99586 1.19595 0.95425 0.94148 0.97754 0.92410 0.92938 0.95712 0.89748 0.88788 0.85233 0.85927 0.84315 0.89139 0.90042 0.93709 0.89885 0.91343 0.85223 0.83474 0.83162 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 2 C 0.01 0.83 5.47 84.65 0.46 1.30 16 3 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 7 C -0.53 -30.15 9.94 25.60 0.25 -29.89 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 9 C 0.22 10.23 4.23 85.64 0.36 10.60 16 10 N -0.59 -22.42 2.46 -826.13 -2.03 -24.44 16 11 C 0.11 3.34 4.96 86.38 0.43 3.76 16 12 C -0.18 -3.94 5.58 30.59 0.17 -3.77 16 13 C 0.46 10.08 3.16 71.98 0.23 10.30 16 14 F -0.18 -4.09 16.80 44.97 0.76 -3.34 16 15 F -0.18 -3.89 17.32 44.97 0.78 -3.11 16 16 F -0.19 -4.76 16.80 44.97 0.76 -4.00 16 17 C 0.54 20.71 5.96 87.66 0.52 21.23 16 18 O -0.58 -27.88 16.02 -3.06 -0.05 -27.93 16 19 C -0.17 -4.66 4.25 -11.69 -0.05 -4.71 16 20 H 0.15 3.20 7.35 -2.39 -0.02 3.18 16 21 C -0.12 -3.03 9.74 30.43 0.30 -2.73 16 22 C -0.06 -1.64 2.15 -53.03 -0.11 -1.76 16 23 C -0.09 -3.03 6.67 31.36 0.21 -2.82 16 24 C -0.08 -2.22 6.77 30.58 0.21 -2.02 16 25 C -0.10 -2.46 6.14 -19.54 -0.12 -2.58 16 26 C -0.12 -2.44 10.03 22.29 0.22 -2.21 16 27 C -0.12 -1.93 10.05 22.24 0.22 -1.71 16 28 C -0.12 -1.88 10.04 22.24 0.22 -1.66 16 29 C -0.10 -1.90 9.98 22.30 0.22 -1.67 16 30 C -0.07 -1.62 5.93 -19.72 -0.12 -1.74 16 31 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 32 H 0.05 2.19 7.13 -2.39 -0.02 2.18 16 33 H 0.02 1.23 6.85 -2.39 -0.02 1.21 16 34 H 0.08 2.72 7.73 -2.39 -0.02 2.70 16 35 H 0.09 2.62 6.38 -2.39 -0.02 2.60 16 36 H 0.13 2.25 7.40 -2.39 -0.02 2.23 16 37 H 0.12 2.53 8.14 -2.39 -0.02 2.52 16 38 H 0.14 2.40 8.13 -2.38 -0.02 2.38 16 39 H 0.09 2.68 7.81 -2.39 -0.02 2.66 16 40 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.04 1.85 6.87 -2.39 -0.02 1.84 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 47 H 0.14 1.88 8.05 -2.91 -0.02 1.85 16 Total: -1.00 -73.73 399.43 6.97 -66.76 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.94 Total: 21.35 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.63 Total: -12.08 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.73 Total: -82.87 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 9 Polarization: -12.74 SS G_CDS: 2.29 Total: -10.45 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -73.73 6.97 -66.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084581829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.561 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds