Wall clock time and date at job start Tue Mar 31 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 C 1.50702 * 109.47438 * 119.99913 * 2 1 3 5 5 N 1.31927 * 119.02192 * 300.00262 * 4 2 1 6 6 C 1.32130 * 121.05796 * 179.97438 * 5 4 2 7 7 C 1.38985 * 119.12736 * 0.02562 * 6 5 4 8 8 Cl 1.73592 * 120.89020 * 179.97438 * 7 6 5 9 9 C 1.39634 * 118.22540 * 0.24814 * 7 6 5 10 10 C 1.48371 * 120.56577 * 179.72385 * 9 7 6 11 11 O 1.21486 * 119.99631 * 353.95027 * 10 9 7 12 12 N 1.34775 * 120.00320 * 173.94299 * 10 9 7 13 13 C 1.46495 * 120.00274 * 183.79717 * 12 10 9 14 14 C 1.50701 * 109.47352 * 94.65483 * 13 12 10 15 15 H 1.08003 * 119.99723 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00205 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99827 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00052 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47494 * 119.99814 * 18 16 14 21 21 H 1.48504 * 109.46842 * 239.99922 * 18 16 14 22 22 C 1.46500 * 119.99704 * 3.79764 * 12 10 9 23 23 C 1.53001 * 109.46903 * 82.34168 * 22 12 10 24 24 H 1.08996 * 110.43929 * 303.35907 * 23 22 12 25 25 C 1.54811 * 110.48689 * 180.67017 * 23 22 12 26 26 C 1.55002 * 102.09348 * 220.44245 * 25 23 22 27 27 O 1.44386 * 103.48960 * 37.02371 * 26 25 23 28 28 C 1.43749 * 106.97151 * 319.94089 * 27 26 25 29 29 N 1.31522 * 119.01318 * 119.97596 * 4 2 1 30 30 H 1.08998 * 109.46993 * 59.99776 * 1 2 3 31 31 H 1.08992 * 109.46973 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46799 * 299.99712 * 1 2 3 33 33 H 1.09003 * 109.47245 * 240.00582 * 2 1 3 34 34 H 1.09006 * 109.46957 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47461 * 299.99938 * 3 2 1 36 36 H 1.09004 * 109.47140 * 60.00496 * 3 2 1 37 37 H 1.08001 * 120.43959 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47327 * 214.65855 * 13 12 10 39 39 H 1.09005 * 109.47062 * 334.66075 * 13 12 10 40 40 H 0.97008 * 120.00288 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.47161 * 202.33854 * 22 12 10 42 42 H 1.08999 * 109.47558 * 322.34096 * 22 12 10 43 43 H 1.09001 * 110.90797 * 338.63901 * 25 23 22 44 44 H 1.08998 * 110.91182 * 102.24540 * 25 23 22 45 45 H 1.08994 * 110.61726 * 278.52196 * 26 25 23 46 46 H 1.08997 * 110.75464 * 155.58644 * 26 25 23 47 47 H 1.08999 * 109.87704 * 267.08786 * 28 27 26 48 48 H 1.09002 * 109.99946 * 146.00583 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7020 -0.2430 2.4191 6 6 2.1196 -0.8345 3.5243 7 6 2.9201 -1.9663 3.4249 8 17 3.4949 -2.7791 4.8470 9 6 3.2544 -2.4289 2.1505 10 6 4.1109 -3.6289 1.9841 11 8 4.6177 -4.1530 2.9559 12 7 4.3267 -4.1377 0.7549 13 6 5.1034 -5.3698 0.5980 14 6 4.1674 -6.5493 0.5369 15 1 3.1006 -6.3963 0.6074 16 6 4.6728 -7.8237 0.3910 17 7 5.9719 -8.0101 0.3056 18 14 3.5126 -9.2857 0.3146 19 1 2.1103 -8.8114 0.4330 20 1 3.6894 -9.9909 -0.9802 21 1 3.8156 -10.2169 1.4309 22 6 3.7846 -3.4584 -0.4245 23 6 4.7190 -2.3167 -0.8299 24 1 4.8608 -1.6272 0.0022 25 6 4.1590 -1.5711 -2.0658 26 6 5.4407 -1.3158 -2.8992 27 8 6.2223 -2.5117 -2.6902 28 6 6.0748 -2.8728 -1.3066 29 7 2.7869 -1.7781 1.0872 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8901 37 1 1.8434 -0.4431 4.4923 38 1 5.6840 -5.3186 -0.3231 39 1 5.7777 -5.4848 1.4467 40 1 6.3276 -8.9067 0.2026 41 1 3.7011 -4.1690 -1.2468 42 1 2.7990 -3.0556 -0.1909 43 1 3.4573 -2.1995 -2.6142 44 1 3.6912 -0.6310 -1.7739 45 1 5.9723 -0.4400 -2.5272 46 1 5.1975 -1.1960 -3.9549 47 1 6.8822 -2.4335 -0.7208 48 1 6.0882 -3.9576 -1.2010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084631218.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:58 Heat of formation + Delta-G solvation = -37.005150 kcal Electronic energy + Delta-G solvation = -32922.450940 eV Core-core repulsion = 28617.737323 eV Total energy + Delta-G solvation = -4304.713617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68860 -40.84353 -39.98704 -37.91864 -36.98539 -36.43318 -35.41643 -34.62191 -33.21109 -32.04447 -30.31485 -29.70805 -27.97017 -27.17274 -26.61179 -25.59053 -24.75100 -23.50521 -22.29025 -21.68330 -20.37579 -19.33820 -18.75039 -18.32373 -17.69669 -17.31767 -17.11984 -16.97618 -16.60046 -16.48681 -16.14802 -15.88742 -15.50388 -15.20840 -15.04534 -14.70150 -14.42000 -14.28905 -13.99721 -13.83801 -13.54453 -13.29699 -13.18980 -12.98365 -12.88472 -12.85416 -12.75465 -12.56656 -12.37681 -12.28561 -12.19296 -12.13402 -12.04894 -12.03271 -11.82383 -11.70235 -11.60003 -11.41799 -11.13161 -10.67574 -10.58887 -10.34910 -10.06686 -9.44772 -8.24238 -6.38992 -0.83792 -0.40159 0.84813 1.35679 1.37231 1.48833 1.67789 1.91948 2.36196 2.50681 2.57927 2.80698 3.04873 3.08122 3.15659 3.37582 3.66211 3.74223 3.88443 3.95545 4.06831 4.23031 4.23963 4.31696 4.42577 4.45264 4.51461 4.71049 4.76169 4.79133 4.89147 4.91175 4.93035 4.97519 5.02837 5.04142 5.12709 5.16356 5.23085 5.24634 5.31118 5.41734 5.44114 5.52771 5.55229 5.77451 5.98595 6.01545 6.52681 6.68548 6.71226 7.11022 7.32948 8.83049 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.004403 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.662263 B = 6357.817797 C = 8370.954130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.137 4.137 4 C 0.315 3.685 5 N -0.484 5.484 6 C 0.182 3.818 7 C -0.119 4.119 8 Cl -0.014 7.014 9 C 0.136 3.864 10 C 0.540 3.460 11 O -0.547 6.547 12 N -0.573 5.573 13 C 0.259 3.741 14 C -0.544 4.544 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.281 1.281 22 C 0.116 3.884 23 C -0.108 4.108 24 H 0.074 0.926 25 C -0.130 4.130 26 C 0.038 3.962 27 O -0.403 6.403 28 C 0.043 3.957 29 N -0.471 5.471 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.220 0.780 38 H 0.031 0.969 39 H 0.007 0.993 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.044 0.956 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 23.192 -2.015 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 C -0.195 4.195 4 C 0.048 3.952 5 N -0.197 5.197 6 C 0.012 3.988 7 C -0.152 4.152 8 Cl 0.015 6.985 9 C -0.011 4.011 10 C 0.325 3.675 11 O -0.425 6.425 12 N -0.302 5.302 13 C 0.139 3.861 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.206 1.206 22 C -0.006 4.006 23 C -0.128 4.128 24 H 0.093 0.907 25 C -0.168 4.168 26 C -0.037 4.037 27 O -0.323 6.323 28 C -0.034 4.034 29 N -0.188 5.188 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.236 0.764 38 H 0.048 0.952 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.131 0.869 47 H 0.063 0.937 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.331 22.989 -2.400 25.742 hybrid contribution 0.521 -2.000 1.447 2.523 sum -10.810 20.989 -0.953 23.629 Atomic orbital electron populations 1.21801 0.91856 1.01998 1.03966 1.20303 0.97433 0.96488 0.90738 1.21799 1.00773 0.92893 1.03989 1.24190 0.88541 0.87813 0.94610 1.68319 1.21656 1.31301 0.98464 1.23943 0.87723 0.87105 1.00008 1.23042 1.02766 0.99061 0.90306 1.98437 1.87095 1.78050 1.34950 1.21551 0.95146 0.94904 0.89470 1.18192 0.81906 0.83424 0.84005 1.90814 1.51042 1.61442 1.39182 1.48135 1.51044 1.25106 1.05915 1.18980 0.90767 0.80310 0.96034 1.21658 0.93374 0.92267 1.50931 0.92879 1.25792 0.96769 1.01737 0.94377 1.70053 1.12961 1.23211 1.50137 0.85398 0.78912 0.78664 0.78031 1.19162 1.19532 1.20640 1.22199 0.99170 0.92873 0.86382 1.22676 0.93839 0.97025 0.99249 0.90715 1.23110 0.98110 1.01666 0.93915 1.23826 0.90486 0.87344 1.02080 1.88856 1.71756 1.45248 1.26425 1.23356 0.97192 1.00309 0.82508 1.68938 1.11380 1.08102 1.30412 0.89031 0.93708 0.91786 0.87229 0.93136 0.88993 0.91861 0.76404 0.95167 0.97478 0.92349 0.91859 0.85924 0.89532 0.87287 0.91457 0.86928 0.93738 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.09 71.98 0.65 -0.97 16 2 C -0.03 -0.40 3.25 -11.54 -0.04 -0.44 16 3 C -0.14 -1.42 9.09 71.98 0.65 -0.77 16 4 C 0.31 6.59 6.34 138.79 0.88 7.46 16 5 N -0.48 -9.69 9.78 -187.77 -1.84 -11.52 16 6 C 0.18 3.65 11.14 84.83 0.94 4.59 16 7 C -0.12 -3.36 6.40 22.79 0.15 -3.21 16 8 Cl -0.01 -0.44 26.27 -2.72 -0.07 -0.52 16 9 C 0.14 4.51 6.52 41.98 0.27 4.78 16 10 C 0.54 23.33 7.59 86.94 0.66 23.99 16 11 O -0.55 -27.43 13.67 -3.67 -0.05 -27.48 16 12 N -0.57 -25.16 2.31 -828.97 -1.92 -27.08 16 13 C 0.26 14.03 4.93 85.63 0.42 14.45 16 14 C -0.54 -31.33 9.38 25.60 0.24 -31.09 16 15 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 16 C 0.01 0.74 5.46 84.65 0.46 1.20 16 17 N -0.92 -55.99 13.29 21.45 0.28 -55.70 16 18 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.12 3.99 4.24 86.38 0.37 4.36 16 23 C -0.11 -3.10 2.55 -9.80 -0.03 -3.13 16 24 H 0.07 2.18 6.99 -2.39 -0.02 2.16 16 25 C -0.13 -2.56 6.58 31.90 0.21 -2.35 16 26 C 0.04 0.81 7.72 72.67 0.56 1.37 16 27 O -0.40 -13.11 11.52 -148.98 -1.72 -14.83 16 28 C 0.04 1.49 7.18 72.35 0.52 2.01 16 29 N -0.47 -12.57 4.57 -177.04 -0.81 -13.38 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.80 8.01 -2.39 -0.02 0.79 16 33 H 0.11 1.35 6.52 -2.39 -0.02 1.33 16 34 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.74 8.01 -2.39 -0.02 0.72 16 37 H 0.22 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.03 1.69 5.68 -2.39 -0.01 1.68 16 39 H 0.01 0.44 7.24 -2.38 -0.02 0.42 16 40 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 41 H 0.06 2.36 8.02 -2.38 -0.02 2.34 16 42 H 0.12 3.80 5.22 -2.63 -0.01 3.79 16 43 H 0.09 1.64 7.87 -2.39 -0.02 1.62 16 44 H 0.11 1.47 6.72 -2.39 -0.02 1.45 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.06 2.73 4.87 -2.39 -0.01 2.72 16 Total: -1.00 -73.96 396.03 3.83 -70.13 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.99 Total: 10.97 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.93 Total: 22.28 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.28 Total: -107.68 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.77 Total: -42.30 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.52 kcal Total: -73.96 3.83 -70.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084631218.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.121 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds