Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47075 * 2 1 4 4 O 1.21281 * 120.00308 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99653 * 179.97438 * 3 2 1 6 6 C 1.39976 * 119.99743 * 175.38271 * 5 3 2 7 7 C 1.38923 * 120.02111 * 35.10012 * 6 5 3 8 8 C 1.38164 * 120.08073 * 179.97438 * 7 6 5 9 9 C 1.38240 * 120.13420 * 359.97438 * 8 7 6 10 10 Cl 1.73595 * 119.97720 * 180.02562 * 9 8 7 11 11 C 1.39026 * 120.04470 * 0.02562 * 9 8 7 12 12 N 1.39743 * 120.04490 * 180.02562 * 11 9 8 13 13 C 1.46502 * 120.00305 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47071 * 180.02562 * 13 12 11 15 15 O 1.21282 * 119.99998 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99907 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99880 * 359.97438 * 16 14 13 18 18 C 1.53005 * 109.46691 * 90.00163 * 17 16 14 19 19 C 1.46493 * 120.00162 * 179.97438 * 16 14 13 20 20 C 1.50703 * 109.46999 * 89.99818 * 19 16 14 21 21 H 1.08002 * 120.00136 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99713 * 180.02562 * 20 19 16 23 23 N 1.31509 * 120.00213 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46808 * 59.99632 * 24 22 20 26 26 H 1.48494 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47145 * 300.00198 * 24 22 20 28 28 C 1.38725 * 120.02114 * 214.82198 * 6 5 3 29 29 H 1.09001 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47091 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.46852 * 60.00083 * 1 2 3 32 32 H 1.08998 * 109.46852 * 119.99917 * 2 1 3 33 33 H 1.08997 * 109.47091 * 239.99892 * 2 1 3 34 34 H 0.96996 * 120.00330 * 355.37836 * 5 3 2 35 35 H 1.07999 * 119.96077 * 359.97438 * 7 6 5 36 36 H 1.08002 * 119.93271 * 180.02562 * 8 7 6 37 37 H 0.96999 * 119.99963 * 0.02562 * 12 11 9 38 38 H 1.09000 * 109.46708 * 300.00145 * 13 12 11 39 39 H 1.08998 * 109.46876 * 59.99751 * 13 12 11 40 40 H 1.08996 * 109.47209 * 209.99787 * 17 16 14 41 41 H 1.08997 * 109.47297 * 330.00574 * 17 16 14 42 42 H 1.09007 * 109.46583 * 179.97438 * 18 17 16 43 43 H 1.08994 * 109.47453 * 299.99522 * 18 17 16 44 44 H 1.08998 * 109.47322 * 60.00521 * 18 17 16 45 45 H 1.09002 * 109.47362 * 210.00050 * 19 16 14 46 46 H 1.09001 * 109.47240 * 329.99736 * 19 16 14 47 47 H 0.97009 * 119.99874 * 180.02562 * 23 22 20 48 48 H 1.07998 * 120.07034 * 359.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8248 2.9829 -0.0971 7 6 3.1189 4.0175 0.5038 8 6 3.5794 5.3167 0.4087 9 6 4.7438 5.5914 -0.2839 10 17 5.3190 7.2251 -0.4002 11 6 5.4545 4.5601 -0.8873 12 7 6.6319 4.8376 -1.5869 13 6 7.3798 3.7502 -2.2229 14 6 8.6001 4.3121 -2.9058 15 8 8.8228 5.5036 -2.8656 16 7 9.4433 3.4907 -3.5620 17 6 9.1739 2.0514 -3.6110 18 6 8.3174 1.7345 -4.8386 19 6 10.6292 4.0369 -4.2262 20 6 11.7872 4.0430 -3.2617 21 1 11.6529 3.6770 -2.2545 22 6 13.0176 4.5168 -3.6649 23 7 13.1809 4.9629 -4.8912 24 14 14.4531 4.5237 -2.4696 25 1 14.7320 3.1351 -2.0229 26 1 15.6552 5.0775 -3.1429 27 1 14.1133 5.3633 -1.2928 28 6 4.9963 3.2538 -0.7890 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.9872 0.9325 0.0686 35 1 2.2091 3.8062 1.0460 36 1 3.0289 6.1192 0.8771 37 1 6.9540 5.7503 -1.6515 38 1 7.6873 3.0293 -1.4654 39 1 6.7463 3.2557 -2.9592 40 1 10.1162 1.5074 -3.6752 41 1 8.6412 1.7505 -2.7089 42 1 8.1173 0.6636 -4.8753 43 1 7.3750 2.2785 -4.7744 44 1 8.8500 2.0353 -5.7407 45 1 10.8787 3.4199 -5.0896 46 1 10.4247 5.0558 -4.5549 47 1 14.0468 5.2959 -5.1749 48 1 5.5491 2.4502 -1.2526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088533491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -53.196052 kcal Electronic energy + Delta-G solvation = -30266.848730 eV Core-core repulsion = 25961.433023 eV Total energy + Delta-G solvation = -4305.415707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87115 -39.63343 -38.85004 -36.47657 -35.92108 -35.35278 -34.44336 -33.22264 -32.86235 -30.33521 -30.13686 -29.72940 -27.72029 -26.04172 -25.17323 -23.18240 -23.03914 -22.35671 -21.94168 -20.40380 -18.94703 -18.14987 -17.59000 -16.76422 -16.65773 -16.50480 -16.28490 -15.94087 -15.45793 -15.16439 -14.93378 -14.53992 -14.43358 -13.97106 -13.93882 -13.88185 -13.56144 -13.42029 -13.10568 -12.81836 -12.75431 -12.59904 -12.18978 -12.17832 -12.10337 -11.92322 -11.73178 -11.63764 -11.54909 -11.27540 -11.00611 -10.89592 -10.84317 -10.62798 -10.56631 -10.21004 -10.20391 -9.83835 -9.73913 -9.16065 -8.49255 -8.47996 -7.83304 -7.45679 -6.10497 -4.15743 0.98182 1.42585 2.22829 2.24509 2.65383 3.16513 3.21900 3.27801 3.32831 3.36516 3.61097 3.87674 4.21272 4.39246 4.57478 4.61450 4.65602 4.80215 5.02155 5.09227 5.13621 5.17802 5.24070 5.26093 5.29715 5.35646 5.36560 5.44039 5.48235 5.51754 5.66347 5.76036 5.79326 5.90461 6.00434 6.11838 6.12978 6.25200 6.37209 6.64121 6.89558 7.01695 7.13559 7.33768 7.40952 7.69333 7.74559 7.84708 8.14956 8.24339 8.75913 8.91821 9.49419 10.97542 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.002209 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.948785 B =12671.014708 C =14296.814375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.516 6.516 5 N -0.674 5.674 6 C 0.195 3.805 7 C -0.174 4.174 8 C -0.043 4.043 9 C -0.128 4.128 10 Cl -0.070 7.070 11 C 0.255 3.745 12 N -0.722 5.722 13 C 0.101 3.899 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.591 5.591 17 C 0.104 3.896 18 C -0.170 4.170 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.221 4.221 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.417 0.583 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.264 0.736 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.608 -12.581 9.325 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.390 6.390 5 N -0.320 5.320 6 C 0.100 3.900 7 C -0.197 4.197 8 C -0.063 4.063 9 C -0.160 4.160 10 Cl -0.041 7.041 11 C 0.147 3.853 12 N -0.354 5.354 13 C -0.027 4.027 14 C 0.285 3.715 15 O -0.412 6.412 16 N -0.323 5.323 17 C -0.021 4.021 18 C -0.229 4.229 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 C -0.247 4.247 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.258 0.742 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.742 -11.269 9.056 26.948 hybrid contribution 1.555 -0.025 0.493 1.631 sum -21.187 -11.293 9.549 25.838 Atomic orbital electron populations 1.21549 0.92658 1.01877 1.03559 1.21653 0.98976 0.92903 1.04754 1.21016 0.81495 0.92388 0.75243 1.90725 1.55019 1.46244 1.47034 1.43595 1.08032 1.07238 1.73096 1.17434 0.93497 0.84171 0.94908 1.20889 1.02868 0.91075 1.04838 1.20682 0.92916 0.96930 0.95749 1.20351 0.99893 0.85176 1.10579 1.98358 1.88694 1.19654 1.97421 1.17150 0.86188 0.91738 0.90215 1.44665 1.23091 1.11210 1.56410 1.21251 0.93135 0.90609 0.97673 1.20113 0.84079 0.87180 0.80144 1.90686 1.74590 1.15413 1.60493 1.48224 1.25481 1.06342 1.52205 1.21480 1.00686 0.82582 0.97306 1.22235 1.00000 1.00983 0.99663 1.19317 0.79985 0.95569 0.92343 1.21361 0.94417 1.42583 0.98429 0.92503 1.24936 0.98815 0.94950 0.95366 1.69917 1.24551 1.41846 1.16884 0.86549 0.81382 0.78329 0.81111 1.20228 1.21142 1.20158 1.20181 1.00691 0.95005 1.08816 0.91833 0.91848 0.91813 0.88547 0.88467 0.75234 0.84111 0.84835 0.74158 0.89560 0.89609 0.89563 0.91728 0.91971 0.93054 0.91857 0.94767 0.93797 0.92588 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.20 37.16 0.34 -0.38 16 2 C -0.14 -0.61 6.42 -27.88 -0.18 -0.79 16 3 C 0.51 4.16 7.67 -10.98 -0.08 4.07 16 4 O -0.52 -6.22 13.41 5.56 0.07 -6.15 16 5 N -0.67 -4.92 5.34 -9.87 -0.05 -4.98 16 6 C 0.19 2.03 6.30 -83.70 -0.53 1.51 16 7 C -0.17 -2.01 8.70 -39.35 -0.34 -2.35 16 8 C -0.04 -0.50 9.81 -39.61 -0.39 -0.89 16 9 C -0.13 -1.69 6.34 -39.29 -0.25 -1.93 16 10 Cl -0.07 -0.96 27.58 -51.86 -1.43 -2.39 16 11 C 0.26 3.38 6.65 -83.76 -0.56 2.82 16 12 N -0.72 -10.75 5.66 -59.79 -0.34 -11.09 16 13 C 0.10 1.42 3.94 -5.19 -0.02 1.40 16 14 C 0.50 9.76 7.74 -10.99 -0.09 9.67 16 15 O -0.53 -12.88 15.25 5.56 0.08 -12.80 16 16 N -0.59 -11.62 2.46 -175.06 -0.43 -12.05 16 17 C 0.10 1.47 5.93 -4.04 -0.02 1.45 16 18 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 19 C 0.25 6.19 5.16 -5.20 -0.03 6.17 16 20 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 24 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C -0.22 -2.40 9.23 -39.20 -0.36 -2.76 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.41 1.61 8.82 -40.82 -0.36 1.25 16 35 H 0.14 1.66 6.22 -52.49 -0.33 1.33 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.42 7.11 6.10 -40.82 -0.25 6.86 16 38 H 0.09 1.03 7.20 -51.93 -0.37 0.66 16 39 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 40 H 0.09 1.29 8.07 -51.93 -0.42 0.88 16 41 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 42 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 46 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.13 1.16 6.73 -52.49 -0.35 0.80 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -34.72 412.40 -9.59 -44.31 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.88 Total: 4.68 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.54 Total: 3.08 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.08 Total: -53.46 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.43 Total: -2.39 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.72 -9.59 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088533491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.887 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds