Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36227 * 116.99855 * 2 1 4 4 C 1.38665 * 122.58737 * 0.03019 * 3 2 1 5 5 C 1.33437 * 114.88228 * 179.97438 * 4 3 2 6 6 S 1.75865 * 109.66089 * 359.97438 * 5 4 3 7 7 C 1.33633 * 122.58524 * 179.97438 * 3 2 1 8 8 S 1.76205 * 125.19481 * 0.02562 * 7 3 2 9 9 O 1.42099 * 106.40072 * 293.53507 * 8 7 3 10 10 O 1.42099 * 106.40278 * 66.45643 * 8 7 3 11 11 N 1.65596 * 107.21813 * 179.97438 * 8 7 3 12 12 C 1.46495 * 120.00363 * 84.32508 * 11 8 7 13 13 C 1.50707 * 109.46821 * 95.00094 * 12 11 8 14 14 H 1.07999 * 119.99885 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99997 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99904 * 17 15 13 19 19 H 1.48498 * 109.47174 * 209.99905 * 17 15 13 20 20 H 1.48498 * 109.46763 * 329.99669 * 17 15 13 21 21 C 1.39680 * 120.00018 * 264.33280 * 11 8 7 22 22 C 1.38929 * 120.07892 * 119.83721 * 21 11 8 23 23 C 1.38078 * 119.92479 * 179.78794 * 22 21 11 24 24 C 1.38302 * 120.07679 * 0.49083 * 23 22 21 25 25 C 1.38263 * 120.14688 * 359.74292 * 24 23 22 26 26 C 1.50704 * 119.96170 * 180.02562 * 25 24 23 27 27 C 1.38125 * 120.07826 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47292 * 59.99557 * 1 2 3 29 29 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46804 * 299.99601 * 1 2 3 31 31 H 1.07998 * 122.55788 * 359.97438 * 4 3 2 32 32 H 1.08002 * 125.16567 * 180.26208 * 5 4 3 33 33 H 1.08997 * 109.47553 * 215.00310 * 12 11 8 34 34 H 1.09001 * 109.47324 * 335.00987 * 12 11 8 35 35 H 0.96996 * 119.99636 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.03345 * 0.02562 * 22 21 11 37 37 H 1.08005 * 119.96170 * 180.20686 * 23 22 21 38 38 H 1.08002 * 119.92715 * 179.76377 * 24 23 22 39 39 H 1.09001 * 109.46907 * 270.02125 * 26 25 24 40 40 H 1.08997 * 109.47121 * 30.01819 * 26 25 24 41 41 H 1.08999 * 109.47478 * 150.02184 * 26 25 24 42 42 H 1.07999 * 120.03781 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4096 0.0006 5 6 2.1052 3.5066 0.0011 6 16 3.8036 3.0502 0.0014 7 6 3.3774 1.3439 0.0005 8 16 4.5284 0.0097 0.0006 9 8 4.3778 -0.6500 1.2502 10 8 4.3786 -0.6495 -1.2493 11 7 6.0462 0.6717 0.0006 12 6 6.6676 1.0796 1.2630 13 6 7.5444 -0.0344 1.7742 14 1 7.6306 -0.9540 1.2145 15 6 8.2366 0.1204 2.9565 16 7 8.1313 1.2401 3.6384 17 14 9.3241 -1.2601 3.5899 18 1 10.6983 -1.0941 3.0522 19 1 9.3647 -1.2172 5.0737 20 1 8.7738 -2.5664 3.1473 21 6 6.7342 0.8413 -1.2032 22 6 7.1253 2.1112 -1.6087 23 6 7.8090 2.2748 -2.7971 24 6 8.0958 1.1774 -3.5884 25 6 7.7038 -0.0873 -3.1902 26 6 8.0189 -1.2803 -4.0555 27 6 7.0236 -0.2586 -2.0003 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2662 2.4500 0.0007 32 1 1.7335 4.5207 0.0056 33 1 7.2720 1.9716 1.0990 34 1 5.8912 1.2965 1.9967 35 1 8.6186 1.3492 4.4700 36 1 6.8981 2.9691 -0.9931 37 1 8.1163 3.2614 -3.1112 38 1 8.6274 1.3085 -4.5194 39 1 7.2016 -1.4460 -4.7574 40 1 8.9402 -1.0953 -4.6077 41 1 8.1426 -2.1623 -3.4272 42 1 6.7181 -1.2469 -1.6897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089672691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -40.560607 kcal Electronic energy + Delta-G solvation = -29360.376938 eV Core-core repulsion = 25332.179877 eV Total energy + Delta-G solvation = -4028.197062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.00158 -39.13374 -36.47747 -35.98437 -35.60987 -35.13044 -32.64546 -31.97320 -30.21281 -29.49485 -27.03039 -26.64553 -26.53091 -24.31102 -22.84725 -22.15701 -20.88281 -19.89422 -19.43007 -17.99338 -17.17102 -16.65722 -16.42783 -16.07318 -16.01921 -15.55154 -15.45277 -14.89075 -14.55566 -14.50528 -14.04291 -13.89356 -13.45780 -13.35120 -13.03150 -12.85101 -12.72029 -12.53124 -12.18188 -11.97892 -11.93764 -11.56992 -11.44493 -11.39610 -11.21606 -11.19487 -11.07349 -11.01537 -10.93276 -10.72059 -10.67343 -10.47547 -10.04564 -9.89434 -9.20407 -8.79567 -8.43105 -8.27858 -8.13590 -7.75211 -6.05122 -4.08151 0.58432 0.86716 1.43698 1.73315 1.84089 1.88475 2.41784 3.25045 3.35046 3.40532 3.46846 3.60129 4.17347 4.26339 4.47534 4.53619 4.92003 4.95150 4.97900 5.19512 5.21343 5.27372 5.30676 5.32662 5.45046 5.49598 5.58867 5.62373 5.76301 5.86463 5.93805 6.00096 6.05368 6.10926 6.41502 6.52529 6.79855 6.94601 6.96475 6.99872 7.15232 7.26803 7.31485 7.76393 7.92647 8.16812 8.92787 9.56269 11.03876 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.004999 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.189392 B = 5599.954276 C = 7187.143533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.227 3.773 4 C -0.215 4.215 5 C -0.163 4.163 6 S 0.245 5.755 7 C -0.825 4.825 8 S 2.714 3.286 9 O -0.926 6.926 10 O -0.957 6.957 11 N -0.942 5.942 12 C 0.253 3.747 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.176 3.824 22 C -0.126 4.126 23 C -0.110 4.110 24 C -0.133 4.133 25 C -0.080 4.080 26 C -0.111 4.111 27 C -0.105 4.105 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 5.696 -12.329 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.167 3.833 4 C -0.249 4.249 5 C -0.301 4.301 6 S 0.509 5.491 7 C -1.024 5.024 8 S 2.800 3.200 9 O -0.916 6.916 10 O -0.947 6.947 11 N -0.774 5.774 12 C 0.133 3.867 13 C -0.563 4.563 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.081 3.919 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.152 4.152 25 C -0.081 4.081 26 C -0.168 4.168 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.194 0.806 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.107 5.539 -12.050 16.674 hybrid contribution -1.280 -0.480 0.688 1.530 sum -11.387 5.059 -11.362 16.863 Atomic orbital electron populations 1.23186 0.77296 1.04721 1.01618 1.86226 1.22398 1.25211 1.87905 1.17088 0.89353 0.85448 0.91442 1.20307 1.01811 0.91108 1.11644 1.25963 0.98469 1.02889 1.02774 1.84195 1.03061 0.92277 1.69580 1.35034 1.13004 1.20723 1.33609 1.01660 0.71596 0.72804 0.73910 1.93618 1.85057 1.69502 1.43428 1.93534 1.85907 1.70745 1.44481 1.55517 1.29879 1.79810 1.12239 1.19344 0.94041 0.96961 0.76308 1.21387 1.26779 1.01372 1.06788 0.91902 1.24885 0.96748 0.95988 0.96198 1.69915 1.42571 1.25112 1.15904 0.86495 0.80518 0.82558 0.77948 1.20565 1.21053 1.19598 1.17294 0.95900 0.92870 0.85820 1.21205 1.00462 0.96322 0.96731 1.20873 0.99008 0.98493 0.94538 1.20896 1.02092 0.92201 0.99966 1.19679 0.98184 0.95117 0.95072 1.20756 1.01308 0.95843 0.98845 1.21235 0.97966 0.98412 0.95007 0.92235 0.87559 0.92137 0.83105 0.80627 0.93815 0.93881 0.92659 0.85796 0.86155 0.86516 0.91360 0.91831 0.91550 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.92 101.05 1.00 1.27 16 2 O -0.30 -4.96 10.28 -20.47 -0.21 -5.17 16 3 C 0.23 3.77 6.60 -41.04 -0.27 3.50 16 4 C -0.22 -2.65 9.16 -41.10 -0.38 -3.03 16 5 C -0.16 -1.85 11.22 29.05 0.33 -1.52 16 6 S 0.25 3.64 23.11 -107.50 -2.48 1.16 16 7 C -0.83 -15.47 6.50 29.12 0.19 -15.29 16 8 S 2.71 60.91 5.41 -107.50 -0.58 60.33 16 9 O -0.93 -24.03 17.20 -57.17 -0.98 -25.02 16 10 O -0.96 -21.81 15.62 -57.17 -0.89 -22.70 16 11 N -0.94 -21.00 2.63 -59.81 -0.16 -21.16 16 12 C 0.25 6.42 5.01 -5.19 -0.03 6.40 16 13 C -0.52 -14.91 9.36 -34.44 -0.32 -15.23 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.18 3.57 5.25 -83.78 -0.44 3.13 16 22 C -0.13 -2.18 9.41 -39.38 -0.37 -2.55 16 23 C -0.11 -1.62 10.04 -39.62 -0.40 -2.02 16 24 C -0.13 -1.91 9.70 -39.55 -0.38 -2.30 16 25 C -0.08 -1.29 5.88 -104.65 -0.62 -1.91 16 26 C -0.11 -1.42 10.01 36.01 0.36 -1.06 16 27 C -0.11 -2.05 8.26 -39.38 -0.33 -2.38 16 28 H 0.06 0.46 7.84 -51.93 -0.41 0.05 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 31 H 0.15 1.30 6.91 -52.49 -0.36 0.93 16 32 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 34 H 0.04 1.15 7.77 -51.93 -0.40 0.74 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 1.98 7.94 -52.49 -0.42 1.56 16 37 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.12 2.52 7.51 -52.49 -0.39 2.13 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -35.87 386.30 -10.80 -46.67 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.28 Total: -0.44 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -1.75 Total: -31.26 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.58 Total: -46.51 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -2.09 Total: -52.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 64.55 SS G_CDS: -3.07 Total: 61.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.87 -10.80 -46.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089672691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.114 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds