Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36227 * 116.99855 * 2 1 4 4 C 1.38665 * 122.58737 * 0.03019 * 3 2 1 5 5 C 1.33437 * 114.88228 * 179.97438 * 4 3 2 6 6 S 1.75865 * 109.66089 * 359.97438 * 5 4 3 7 7 C 1.33633 * 122.58524 * 179.97438 * 3 2 1 8 8 S 1.76205 * 125.19481 * 0.02562 * 7 3 2 9 9 O 1.42099 * 106.40072 * 293.53507 * 8 7 3 10 10 O 1.42099 * 106.40278 * 66.45643 * 8 7 3 11 11 N 1.65596 * 107.21813 * 179.97438 * 8 7 3 12 12 C 1.46495 * 120.00363 * 84.32508 * 11 8 7 13 13 C 1.50707 * 109.46821 * 95.00094 * 12 11 8 14 14 H 1.07999 * 119.99885 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99997 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47367 * 89.99904 * 17 15 13 19 19 H 1.48498 * 109.47174 * 209.99905 * 17 15 13 20 20 H 1.48498 * 109.46763 * 329.99669 * 17 15 13 21 21 C 1.39680 * 120.00018 * 264.33280 * 11 8 7 22 22 C 1.38929 * 120.07892 * 119.83721 * 21 11 8 23 23 C 1.38078 * 119.92479 * 179.78794 * 22 21 11 24 24 C 1.38302 * 120.07679 * 0.49083 * 23 22 21 25 25 C 1.38263 * 120.14688 * 359.74292 * 24 23 22 26 26 C 1.50704 * 119.96170 * 180.02562 * 25 24 23 27 27 C 1.38125 * 120.07826 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47292 * 59.99557 * 1 2 3 29 29 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46804 * 299.99601 * 1 2 3 31 31 H 1.07998 * 122.55788 * 359.97438 * 4 3 2 32 32 H 1.08002 * 125.16567 * 180.26208 * 5 4 3 33 33 H 1.08997 * 109.47553 * 215.00310 * 12 11 8 34 34 H 1.09001 * 109.47324 * 335.00987 * 12 11 8 35 35 H 0.96996 * 119.99636 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.03345 * 0.02562 * 22 21 11 37 37 H 1.08005 * 119.96170 * 180.20686 * 23 22 21 38 38 H 1.08002 * 119.92715 * 179.76377 * 24 23 22 39 39 H 1.09001 * 109.46907 * 270.02125 * 26 25 24 40 40 H 1.08997 * 109.47121 * 30.01819 * 26 25 24 41 41 H 1.08999 * 109.47478 * 150.02184 * 26 25 24 42 42 H 1.07999 * 120.03781 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4096 0.0006 5 6 2.1052 3.5066 0.0011 6 16 3.8036 3.0502 0.0014 7 6 3.3774 1.3439 0.0005 8 16 4.5284 0.0097 0.0006 9 8 4.3778 -0.6500 1.2502 10 8 4.3786 -0.6495 -1.2493 11 7 6.0462 0.6717 0.0006 12 6 6.6676 1.0796 1.2630 13 6 7.5444 -0.0344 1.7742 14 1 7.6306 -0.9540 1.2145 15 6 8.2366 0.1204 2.9565 16 7 8.1313 1.2401 3.6384 17 14 9.3241 -1.2601 3.5899 18 1 10.6983 -1.0941 3.0522 19 1 9.3647 -1.2172 5.0737 20 1 8.7738 -2.5664 3.1473 21 6 6.7342 0.8413 -1.2032 22 6 7.1253 2.1112 -1.6087 23 6 7.8090 2.2748 -2.7971 24 6 8.0958 1.1774 -3.5884 25 6 7.7038 -0.0873 -3.1902 26 6 8.0189 -1.2803 -4.0555 27 6 7.0236 -0.2586 -2.0003 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2662 2.4500 0.0007 32 1 1.7335 4.5207 0.0056 33 1 7.2720 1.9716 1.0990 34 1 5.8912 1.2965 1.9967 35 1 8.6186 1.3492 4.4700 36 1 6.8981 2.9691 -0.9931 37 1 8.1163 3.2614 -3.1112 38 1 8.6274 1.3085 -4.5194 39 1 7.2016 -1.4460 -4.7574 40 1 8.9402 -1.0953 -4.6077 41 1 8.1426 -2.1623 -3.4272 42 1 6.7181 -1.2469 -1.6897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089672691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = -65.301065 kcal Electronic energy + Delta-G solvation = -29361.449765 eV Core-core repulsion = 25332.179877 eV Total energy + Delta-G solvation = -4029.269888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12103 -40.49144 -38.28516 -37.24045 -37.04593 -36.95207 -34.70336 -33.25073 -31.31070 -31.04865 -28.64070 -27.87299 -27.70602 -25.40858 -24.84337 -23.52617 -22.24219 -21.09124 -20.66230 -19.56848 -18.75610 -18.43914 -17.97153 -17.61658 -17.18426 -16.95847 -16.72244 -16.42321 -16.20430 -15.76111 -15.67696 -14.86424 -14.77626 -14.60185 -14.46231 -14.07066 -14.00703 -13.98750 -13.75857 -13.41379 -13.24469 -13.14309 -13.11775 -12.92481 -12.89518 -12.69162 -12.61510 -12.42599 -12.23492 -12.13514 -12.12628 -12.09732 -11.87454 -11.70619 -10.63403 -10.49929 -10.35341 -9.59154 -9.27468 -9.21792 -8.23729 -6.34932 -0.74962 -0.53132 0.24876 0.47791 0.54750 0.73727 1.35536 1.35856 1.37879 1.48878 1.92411 2.26655 2.38659 2.64032 2.86188 3.07242 3.54911 3.62380 3.91924 4.01754 4.08820 4.18848 4.23287 4.31943 4.33358 4.53250 4.54996 4.60942 4.61669 4.70779 4.71745 4.87849 4.96929 4.97872 5.02810 5.10200 5.21235 5.33758 5.53037 5.64812 5.70741 5.71181 5.88394 5.93160 6.02757 6.29222 6.69655 7.32432 8.84225 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.007845 B = 0.004999 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.189392 B = 5599.954276 C = 7187.143533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.342 6.342 3 C 0.231 3.769 4 C -0.222 4.222 5 C -0.121 4.121 6 S 0.222 5.778 7 C -0.876 4.876 8 S 2.718 3.282 9 O -0.984 6.984 10 O -0.978 6.978 11 N -0.941 5.941 12 C 0.274 3.726 13 C -0.548 4.548 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.278 1.278 21 C 0.139 3.861 22 C -0.137 4.137 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.085 4.085 26 C -0.110 4.110 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.198 0.802 32 H 0.230 0.770 33 H 0.041 0.959 34 H 0.021 0.979 35 H 0.270 0.730 36 H 0.130 0.870 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 8.166 -14.313 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.255 6.255 3 C 0.169 3.831 4 C -0.253 4.253 5 C -0.258 4.258 6 S 0.484 5.516 7 C -1.080 5.080 8 S 2.811 3.189 9 O -0.975 6.975 10 O -0.968 6.968 11 N -0.773 5.773 12 C 0.153 3.847 13 C -0.587 4.587 14 H 0.064 0.936 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.203 1.203 21 C 0.045 3.955 22 C -0.158 4.158 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.086 4.086 26 C -0.167 4.167 27 C -0.161 4.161 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.214 0.786 32 H 0.246 0.754 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.704 7.951 -14.055 19.374 hybrid contribution -1.251 -1.183 1.199 2.098 sum -11.956 6.769 -12.856 18.815 Atomic orbital electron populations 1.23670 0.74072 1.06647 1.03952 1.86197 1.25940 1.25998 1.87399 1.17667 0.89084 0.87099 0.89288 1.20656 1.03932 0.89169 1.11579 1.26589 0.95506 1.05032 0.98700 1.84149 1.06648 0.89997 1.70765 1.34358 1.13151 1.21353 1.39143 1.00811 0.71955 0.73572 0.72542 1.93532 1.86008 1.72447 1.45495 1.93480 1.86277 1.72493 1.44542 1.55142 1.30088 1.79922 1.12130 1.18851 0.92734 0.95805 0.77328 1.21668 1.27905 1.01720 1.07443 0.93571 1.25664 0.97941 0.98361 0.96237 1.69990 1.43197 1.26429 1.16262 0.85608 0.79297 0.79264 0.77911 1.18869 1.19754 1.20285 1.17665 0.97731 0.94530 0.85549 1.21409 1.01011 0.95201 0.98197 1.21376 0.96923 1.00671 0.92901 1.21408 1.00647 0.90920 1.01068 1.20113 0.96929 0.97508 0.94025 1.20834 1.03170 0.94126 0.98546 1.21294 1.00384 0.97214 0.97253 0.89540 0.86142 0.90010 0.78552 0.75351 0.94094 0.96125 0.92142 0.85162 0.81986 0.82115 0.90157 0.88775 0.92507 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.92 113.37 1.12 1.30 16 2 O -0.34 -11.33 10.28 -96.15 -0.99 -12.32 16 3 C 0.23 7.64 6.60 21.33 0.14 7.78 16 4 C -0.22 -4.76 9.16 21.28 0.19 -4.57 16 5 C -0.12 -2.30 11.22 66.73 0.75 -1.55 16 6 S 0.22 6.58 23.11 -56.49 -1.31 5.28 16 7 C -0.88 -34.38 6.50 66.77 0.43 -33.94 16 8 S 2.72 133.08 5.41 -56.49 -0.31 132.77 16 9 O -0.98 -56.30 17.20 -128.00 -2.20 -58.50 16 10 O -0.98 -48.79 15.62 -128.00 -2.00 -50.79 16 11 N -0.94 -45.43 2.63 -343.13 -0.90 -46.33 16 12 C 0.27 14.95 5.01 85.64 0.43 15.38 16 13 C -0.55 -33.17 9.36 25.60 0.24 -32.93 16 14 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 15 C 0.02 1.06 5.46 84.65 0.46 1.52 16 16 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 17 Si 0.95 46.62 29.54 68.60 2.03 48.64 16 18 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 21 C 0.14 5.99 5.25 38.21 0.20 6.19 16 22 C -0.14 -4.80 9.41 22.40 0.21 -4.59 16 23 C -0.10 -2.71 10.04 22.25 0.22 -2.49 16 24 C -0.12 -3.18 9.70 22.29 0.22 -2.96 16 25 C -0.09 -2.72 5.88 -19.88 -0.12 -2.84 16 26 C -0.11 -2.70 10.01 71.24 0.71 -1.99 16 27 C -0.14 -5.85 8.26 22.40 0.18 -5.66 16 28 H 0.09 1.07 7.84 -2.39 -0.02 1.05 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.10 7.84 -2.38 -0.02 1.08 16 31 H 0.20 2.33 6.91 -2.91 -0.02 2.31 16 32 H 0.23 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.04 2.21 7.56 -2.39 -0.02 2.19 16 34 H 0.02 1.20 7.77 -2.39 -0.02 1.19 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.13 4.26 7.94 -2.91 -0.02 4.24 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 41 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 42 H 0.10 4.42 7.51 -2.91 -0.02 4.39 16 Total: -1.00 -87.04 386.30 1.06 -85.98 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.04 Total: 11.35 kcal Atomic # 6 Polarization: -66.75 SS G_CDS: 5.41 Total: -61.34 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -0.62 Total: -101.08 kcal Atomic # 8 Polarization: -116.41 SS G_CDS: -5.19 Total: -121.60 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 139.66 SS G_CDS: -1.61 Total: 138.05 kcal Total: -87.04 1.06 -85.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089672691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.680 kcal (2) G-P(sol) polarization free energy of solvation -87.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds