Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48502 * 109.47135 * 240.00332 * 3 2 1 5 5 H 1.48500 * 109.47399 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46927 * 120.00621 * 3 2 1 7 7 C 1.37873 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99771 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99563 * 270.00384 * 10 9 7 12 12 C 1.50703 * 109.47126 * 269.99434 * 11 10 9 13 13 C 1.34518 * 125.78741 * 89.71560 * 12 11 10 14 14 C 1.41382 * 106.84259 * 179.89398 * 13 12 11 15 15 C 1.34516 * 106.83715 * 0.37487 * 14 13 12 16 16 O 1.34304 * 125.79196 * 270.03628 * 12 11 10 17 17 C 1.34769 * 119.99789 * 89.99865 * 10 9 7 18 18 O 1.21590 * 119.99749 * 179.97438 * 17 10 9 19 19 N 1.34776 * 120.00411 * 0.02562 * 17 10 9 20 20 C 1.40035 * 120.00120 * 185.29852 * 19 17 10 21 21 C 1.38882 * 120.00452 * 213.32034 * 20 19 17 22 22 C 1.38035 * 119.99801 * 179.97438 * 21 20 19 23 23 C 1.38849 * 120.00204 * 359.97438 * 22 21 20 24 24 N 1.40275 * 119.99638 * 179.97438 * 23 22 21 25 25 C 1.35202 * 126.05372 * 180.02562 * 24 23 22 26 26 C 1.35339 * 107.71424 * 179.97438 * 25 24 23 27 27 C 1.39889 * 107.93256 * 0.02562 * 26 25 24 28 28 N 1.30897 * 108.24258 * 359.97438 * 27 26 25 29 29 C 1.38856 * 120.00761 * 0.26275 * 23 22 21 30 30 C 1.38036 * 120.00015 * 359.48283 * 29 23 22 31 31 H 0.97003 * 120.00083 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47020 * 60.00581 * 9 7 2 33 33 H 1.09000 * 109.47109 * 300.00270 * 9 7 2 34 34 H 1.08994 * 109.47419 * 29.99991 * 11 10 9 35 35 H 1.08998 * 109.47028 * 150.00051 * 11 10 9 36 36 H 1.07997 * 126.57556 * 0.03381 * 13 12 11 37 37 H 1.07988 * 126.58413 * 180.17014 * 14 13 12 38 38 H 1.07997 * 125.79077 * 179.75139 * 15 14 13 39 39 H 0.96995 * 120.00092 * 5.29938 * 19 17 10 40 40 H 1.08003 * 119.99795 * 359.95500 * 21 20 19 41 41 H 1.07997 * 119.99869 * 180.02562 * 22 21 20 42 42 H 1.07997 * 126.13995 * 0.02562 * 25 24 23 43 43 H 1.08004 * 126.03158 * 180.25925 * 26 25 24 44 44 H 1.08005 * 125.87966 * 180.02562 * 27 26 25 45 45 H 1.07996 * 119.99785 * 179.72189 * 29 23 22 46 46 H 1.07999 * 119.99700 * 180.22993 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.6792 -4.1693 -1.2693 12 6 1.7625 -5.2836 -1.7044 13 6 0.6669 -5.1462 -2.4726 14 6 0.1145 -6.4377 -2.6331 15 6 0.9010 -7.2859 -1.9465 16 8 1.8976 -6.5813 -1.3859 17 6 2.6411 -4.1248 1.1666 18 8 3.4308 -5.0493 1.1666 19 7 2.2028 -3.6130 2.3338 20 6 2.7400 -4.0689 3.5440 21 6 1.9410 -4.1332 4.6781 22 6 2.4705 -4.5832 5.8708 23 6 3.8018 -4.9720 5.9366 24 7 4.3400 -5.4288 7.1488 25 6 5.6135 -5.8354 7.3510 26 6 5.7292 -6.1957 8.6504 27 6 4.4863 -6.0039 9.2630 28 7 3.6531 -5.5441 8.3642 29 6 4.6022 -4.9031 4.8039 30 6 4.0715 -4.4582 3.6099 31 1 -0.4850 0.8401 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8897 34 1 2.6869 -3.3876 -2.0289 35 1 3.6886 -4.5593 -1.1390 36 1 0.2840 -4.2261 -2.8889 37 1 -0.7709 -6.6937 -3.1958 38 1 0.7556 -8.3526 -1.8602 39 1 1.5153 -2.9288 2.3357 40 1 0.9054 -3.8309 4.6269 41 1 1.8491 -4.6336 6.7526 42 1 6.3976 -5.8662 6.6091 43 1 6.6244 -6.5626 9.1307 44 1 4.2543 -6.2004 10.2994 45 1 5.6388 -5.2013 4.8564 46 1 4.6930 -4.4081 2.7281 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089797686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = 113.613977 kcal Electronic energy + Delta-G solvation = -31755.913555 eV Core-core repulsion = 27422.049690 eV Total energy + Delta-G solvation = -4333.863865 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21560 -41.54800 -40.25438 -38.54226 -35.55310 -34.76195 -32.92915 -32.59564 -32.43527 -31.20263 -30.34369 -30.07100 -28.01025 -27.45498 -25.44926 -23.49574 -23.24022 -22.89628 -21.38651 -20.96348 -20.69262 -20.29651 -19.32230 -18.31588 -17.88063 -17.20150 -16.89188 -16.45514 -15.85682 -15.40146 -15.27078 -15.00150 -14.86940 -14.70593 -14.56287 -14.15576 -13.90192 -13.69605 -13.48608 -13.09891 -12.86858 -12.78413 -12.60615 -12.51655 -12.50236 -12.44752 -12.27858 -11.67139 -11.44501 -11.34114 -11.04310 -10.87921 -10.82083 -10.61458 -10.33098 -9.98702 -9.67591 -9.61101 -9.51313 -8.99934 -8.94388 -8.70438 -8.26935 -8.04534 -7.44841 -6.32003 -4.41366 0.87309 1.41445 1.96732 2.15225 2.34630 2.65611 2.82523 3.16904 3.22734 3.23219 3.26448 3.30089 3.63194 4.00576 4.20404 4.41016 4.50265 4.64296 4.90270 4.97076 5.01483 5.02949 5.19879 5.29961 5.32386 5.37214 5.42575 5.56958 5.64974 5.67060 5.79146 5.96771 6.00071 6.07312 6.09144 6.22536 6.26431 6.37861 6.42886 6.47508 6.55606 6.60516 6.78865 6.93735 6.99677 7.13183 7.26280 7.47320 7.54778 7.55104 7.62507 7.86786 8.34102 8.67652 9.02871 9.28570 10.74265 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.002788 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.192183 B =10040.692418 C =12746.524959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.239 3.761 10 N -0.604 5.604 11 C 0.214 3.786 12 C -0.018 4.018 13 C -0.201 4.201 14 C -0.218 4.218 15 C -0.051 4.051 16 O -0.165 6.165 17 C 0.710 3.290 18 O -0.594 6.594 19 N -0.679 5.679 20 C 0.186 3.814 21 C -0.133 4.133 22 C -0.092 4.092 23 C 0.116 3.884 24 N -0.309 5.309 25 C 0.053 3.947 26 C -0.271 4.271 27 C 0.046 3.954 28 N -0.293 5.293 29 C -0.114 4.114 30 C -0.099 4.099 31 H 0.268 0.732 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.196 0.804 39 H 0.420 0.580 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.176 0.824 43 H 0.150 0.850 44 H 0.186 0.814 45 H 0.129 0.871 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -10.763 6.996 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.120 3.880 10 N -0.337 5.337 11 C 0.089 3.911 12 C -0.070 4.070 13 C -0.222 4.222 14 C -0.237 4.237 15 C -0.120 4.120 16 O -0.060 6.060 17 C 0.412 3.588 18 O -0.474 6.474 19 N -0.327 5.327 20 C 0.089 3.911 21 C -0.155 4.155 22 C -0.112 4.112 23 C 0.023 3.977 24 N -0.084 5.084 25 C -0.091 4.091 26 C -0.300 4.300 27 C -0.140 4.140 28 N -0.113 5.113 29 C -0.136 4.136 30 C -0.120 4.120 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.213 0.787 39 H 0.260 0.740 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.193 0.807 43 H 0.168 0.832 44 H 0.203 0.797 45 H 0.147 0.853 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.913 -10.920 6.760 13.751 hybrid contribution 0.487 1.030 -0.003 1.140 sum 5.400 -9.890 6.757 13.139 Atomic orbital electron populations 1.69907 1.06023 1.27717 1.48990 1.24945 0.94860 0.99392 0.94427 0.86537 0.79560 0.82373 0.78937 1.20005 1.21107 1.20043 1.21452 0.93722 0.90201 1.52986 0.91827 1.19419 0.87398 0.82527 0.98680 1.47462 1.48009 1.35678 1.02585 1.19605 0.95112 0.90117 0.86222 1.23279 1.00223 0.83100 1.00406 1.21684 0.97219 0.98812 1.04437 1.21793 1.02923 0.93275 1.05693 1.23968 0.90138 0.97892 0.99974 1.84115 1.44168 1.18713 1.59042 1.15788 0.80843 0.81450 0.80683 1.90860 1.38921 1.31181 1.86438 1.42918 1.43667 1.43282 1.02855 1.17663 0.91914 0.96231 0.85326 1.20793 0.99883 1.03217 0.91621 1.20549 0.93044 0.99291 0.98337 1.17467 0.94118 1.03745 0.82326 1.45888 1.07625 1.47768 1.07120 1.22637 0.88044 0.99728 0.98718 1.21533 1.00062 1.14536 0.93877 1.23996 0.91926 0.98537 0.99568 1.77430 1.20832 1.23338 0.89713 1.20608 0.99537 1.02620 0.90804 1.21038 0.93890 0.99454 0.97606 0.92258 0.93888 0.95192 0.86741 0.88996 0.83334 0.83880 0.78741 0.73974 0.84688 0.84468 0.80668 0.83181 0.79702 0.85328 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.07 13.29 55.43 0.74 -22.34 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -13.09 9.39 -34.44 -0.32 -13.41 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.23 4.97 -5.19 -0.03 5.21 16 10 N -0.60 -11.96 2.44 -182.18 -0.44 -12.40 16 11 C 0.21 3.76 5.94 -5.19 -0.03 3.73 16 12 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 13 C -0.20 -3.25 10.81 -39.70 -0.43 -3.68 16 14 C -0.22 -3.10 10.91 -39.70 -0.43 -3.53 16 15 C -0.05 -0.72 12.09 29.42 0.36 -0.37 16 16 O -0.17 -2.91 10.65 5.70 0.06 -2.85 16 17 C 0.71 14.31 8.01 -86.93 -0.70 13.61 16 18 O -0.59 -12.78 13.60 5.29 0.07 -12.71 16 19 N -0.68 -12.41 5.22 -14.20 -0.07 -12.49 16 20 C 0.19 3.10 6.28 -83.63 -0.53 2.58 16 21 C -0.13 -1.94 9.96 -39.42 -0.39 -2.34 16 22 C -0.09 -1.31 9.65 -39.43 -0.38 -1.69 16 23 C 0.12 1.65 6.69 -83.54 -0.56 1.09 16 24 N -0.31 -4.20 3.80 -10.67 -0.04 -4.24 16 25 C 0.05 0.57 10.80 -17.10 -0.18 0.39 16 26 C -0.27 -2.63 10.80 -40.00 -0.43 -3.06 16 27 C 0.05 0.49 12.03 -17.33 -0.21 0.28 16 28 N -0.29 -4.03 11.87 30.64 0.36 -3.66 16 29 C -0.11 -1.57 9.45 -39.43 -0.37 -1.94 16 30 C -0.10 -1.58 8.65 -39.42 -0.34 -1.92 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.03 0.68 6.29 -51.93 -0.33 0.35 16 34 H 0.11 1.85 8.07 -51.93 -0.42 1.43 16 35 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 36 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.42 7.65 6.51 -40.82 -0.27 7.39 16 40 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.14 1.84 7.69 -52.49 -0.40 1.44 16 42 H 0.18 1.36 7.04 -52.49 -0.37 0.99 16 43 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.19 1.28 8.06 -52.48 -0.42 0.85 16 45 H 0.13 1.39 6.73 -52.49 -0.35 1.04 16 46 H 0.15 2.53 6.41 -52.49 -0.34 2.20 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -30.67 399.21 -9.01 -39.68 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.36 Total: 14.44 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -5.32 Total: -4.03 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.54 Total: -55.13 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.13 Total: -15.56 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.67 -9.01 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089797686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.297 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds