Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21296 * 120.00189 * 2 1 4 4 C 1.46863 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.40035 * 120.11625 * 186.27863 * 4 2 1 6 6 C 1.37119 * 119.89009 * 179.97438 * 5 4 2 7 7 C 1.39102 * 120.10963 * 359.97438 * 6 5 4 8 8 O 1.35649 * 119.88316 * 179.97438 * 7 6 5 9 9 C 1.35710 * 117.99836 * 180.88344 * 8 7 6 10 10 C 1.39012 * 119.91137 * 254.89319 * 9 8 7 11 11 C 1.37704 * 120.08413 * 180.02562 * 10 9 8 12 12 C 1.39729 * 119.91116 * 359.97438 * 11 10 9 13 13 C 1.47619 * 120.08540 * 180.02562 * 12 11 10 14 14 O 1.21587 * 119.99467 * 22.69328 * 13 12 11 15 15 N 1.34773 * 120.00281 * 202.68885 * 13 12 11 16 16 C 1.46498 * 119.99640 * 4.73441 * 15 13 12 17 17 C 1.46499 * 119.99953 * 184.73190 * 15 13 12 18 18 H 1.08998 * 109.47372 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47014 * 240.00062 * 17 15 13 20 20 C 1.50698 * 109.47014 * 120.00372 * 17 15 13 21 21 H 1.08003 * 120.00309 * 359.97438 * 20 17 15 22 22 C 1.37874 * 119.99880 * 180.02562 * 20 17 15 23 23 N 1.31507 * 120.00293 * 359.97438 * 22 20 17 24 24 Si 1.86808 * 119.99835 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47468 * 59.99734 * 24 22 20 26 26 H 1.48496 * 109.47157 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46884 * 299.99627 * 24 22 20 28 28 C 1.39734 * 119.83204 * 0.27849 * 12 11 10 29 29 C 1.37699 * 119.91060 * 359.42315 * 28 12 11 30 30 C 1.39100 * 120.22567 * 0.26172 * 7 6 5 31 31 C 1.37109 * 120.11271 * 359.48007 * 30 7 6 32 32 H 1.09003 * 109.47586 * 183.59738 * 1 2 3 33 33 H 1.09003 * 109.47291 * 303.60194 * 1 2 3 34 34 H 1.09004 * 109.46815 * 63.60060 * 1 2 3 35 35 H 1.08008 * 120.05515 * 359.95516 * 5 4 2 36 36 H 1.07999 * 119.94500 * 179.97438 * 6 5 4 37 37 H 1.08005 * 119.96444 * 0.02562 * 10 9 8 38 38 H 1.08004 * 120.04282 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47169 * 263.77649 * 16 15 13 40 40 H 1.09001 * 109.46960 * 143.78072 * 16 15 13 41 41 H 1.08999 * 109.47354 * 23.78057 * 16 15 13 42 42 H 1.08995 * 109.47264 * 59.99907 * 19 17 15 43 43 H 1.09003 * 109.47351 * 179.97438 * 19 17 15 44 44 H 1.08999 * 109.47523 * 300.00391 * 19 17 15 45 45 H 0.97003 * 120.00602 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.04373 * 179.72048 * 28 12 11 47 47 H 1.07998 * 119.95875 * 180.27507 * 29 28 12 48 48 H 1.07997 * 119.93718 * 179.71982 * 30 7 6 49 49 H 1.08000 * 120.05912 * 180.23281 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6353 -1.2782 0.1330 6 6 4.3163 -2.4684 0.1335 7 6 3.6245 -3.6682 0.0032 8 8 4.3028 -4.8429 0.0037 9 6 3.5916 -5.9892 -0.1441 10 6 3.3690 -6.8133 0.9531 11 6 2.6483 -7.9775 0.8071 12 6 2.1401 -8.3299 -0.4459 13 6 1.3666 -9.5768 -0.6068 14 8 0.8187 -10.0805 0.3547 15 7 1.2676 -10.1568 -1.8193 16 6 2.0115 -9.6090 -2.9562 17 6 0.4161 -11.3352 -2.0003 18 1 -0.0531 -11.5937 -1.0510 19 6 1.2676 -12.5100 -2.4855 20 6 -0.6503 -11.0323 -3.0211 21 1 -0.6900 -10.0593 -3.4881 22 6 -1.5757 -11.9971 -3.3582 23 7 -1.5277 -13.1817 -2.7893 24 14 -2.8971 -11.6219 -4.6243 25 1 -2.2580 -11.2704 -5.9177 26 1 -3.7611 -12.8158 -4.8068 27 1 -3.7233 -10.4809 -4.1542 28 6 2.3706 -7.5016 -1.5475 29 6 3.0870 -6.3359 -1.3921 30 6 2.2402 -3.6670 -0.1336 31 6 1.5496 -2.4826 -0.1299 32 1 -0.3634 -1.0256 0.0645 33 1 -0.3634 0.5687 0.8560 34 1 -0.3633 0.4569 -0.9205 35 1 4.1734 -0.3472 0.2344 36 1 5.3914 -2.4743 0.2352 37 1 3.7617 -6.5401 1.9215 38 1 2.4761 -8.6174 1.6599 39 1 1.3630 -8.9464 -3.5294 40 1 2.3527 -10.4244 -3.5940 41 1 2.8722 -9.0486 -2.5912 42 1 2.0389 -12.7290 -1.7472 43 1 0.6342 -13.3869 -2.6197 44 1 1.7366 -12.2513 -3.4348 45 1 -2.1790 -13.8604 -3.0262 46 1 1.9833 -7.7729 -2.5185 47 1 3.2617 -5.6930 -2.2421 48 1 1.7083 -4.6010 -0.2390 49 1 0.4745 -2.4829 -0.2324 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089849342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -18.399714 kcal Electronic energy + Delta-G solvation = -31736.704052 eV Core-core repulsion = 27402.937325 eV Total energy + Delta-G solvation = -4333.766727 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43288 -40.17435 -39.62229 -38.12056 -37.09188 -35.57477 -33.19397 -32.38256 -31.43830 -31.13286 -30.80315 -29.45836 -28.73127 -26.65473 -25.30596 -24.73104 -23.60635 -23.00854 -22.54332 -21.14384 -20.27250 -19.18083 -19.01072 -17.47579 -17.08352 -16.73824 -16.59333 -16.11219 -15.61231 -15.44684 -15.31233 -15.08434 -14.71162 -14.65156 -14.55250 -14.20493 -14.08159 -13.99204 -13.59915 -13.40428 -13.12664 -12.86404 -12.67472 -12.61508 -12.57868 -12.41010 -12.31803 -12.10785 -11.61781 -11.52689 -11.34325 -11.14044 -10.95444 -10.78421 -10.67612 -10.34450 -10.22077 -10.12278 -9.57609 -9.29519 -9.23632 -9.19354 -8.91518 -8.64123 -8.49894 -7.72541 -6.14085 -4.22984 0.26000 0.58267 0.91456 1.13513 2.01599 2.61363 3.17162 3.22842 3.28669 3.29759 3.35029 3.70792 3.74541 3.87875 4.24371 4.33311 4.44580 4.60585 4.63009 4.65958 4.73174 4.86112 4.92087 4.97528 5.01974 5.09130 5.13526 5.17336 5.24144 5.41034 5.48922 5.54995 5.56556 5.73503 5.77864 5.84633 5.87766 5.95415 5.97587 6.05148 6.15028 6.23822 6.24810 6.50849 6.69536 6.75100 6.97181 7.16132 7.17114 7.30755 7.42203 7.62923 7.92945 8.09662 8.38155 8.71756 8.89165 9.43622 10.91126 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.001998 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.012165 B =14013.525567 C =15521.561893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.400 3.600 3 O -0.467 6.467 4 C -0.214 4.214 5 C -0.023 4.023 6 C -0.161 4.161 7 C 0.161 3.839 8 O -0.252 6.252 9 C 0.086 3.914 10 C -0.128 4.128 11 C -0.051 4.051 12 C -0.113 4.113 13 C 0.542 3.458 14 O -0.545 6.545 15 N -0.582 5.582 16 C 0.068 3.932 17 C 0.258 3.742 18 H 0.065 0.935 19 C -0.148 4.148 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 C -0.093 4.093 29 C -0.142 4.142 30 C -0.208 4.208 31 C -0.031 4.031 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.012 0.988 43 H 0.095 0.905 44 H 0.031 0.969 45 H 0.265 0.735 46 H 0.162 0.838 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.982 20.477 3.814 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.280 3.720 3 O -0.344 6.344 4 C -0.215 4.215 5 C -0.041 4.041 6 C -0.180 4.180 7 C 0.117 3.883 8 O -0.163 6.163 9 C 0.044 3.956 10 C -0.147 4.147 11 C -0.070 4.070 12 C -0.116 4.116 13 C 0.329 3.671 14 O -0.425 6.425 15 N -0.312 5.312 16 C -0.076 4.076 17 C 0.158 3.842 18 H 0.083 0.917 19 C -0.206 4.206 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 C -0.111 4.111 29 C -0.161 4.161 30 C -0.227 4.227 31 C -0.049 4.049 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.113 0.887 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.179 0.821 47 H 0.152 0.848 48 H 0.158 0.842 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.091 20.496 4.304 23.248 hybrid contribution -0.840 -0.058 -0.891 1.226 sum 9.250 20.438 3.413 22.692 Atomic orbital electron populations 1.22252 0.93828 1.04939 1.05016 1.22344 0.91633 0.87484 0.70555 1.90543 1.72104 1.34391 1.37366 1.20450 0.94696 0.94881 1.11483 1.21083 0.92948 0.97816 0.92227 1.20295 1.01009 0.89133 1.07533 1.19594 0.90739 0.85232 0.92712 1.84302 1.34729 1.11186 1.86048 1.18854 0.96774 0.86293 0.93676 1.21137 0.99744 0.95670 0.98110 1.21185 0.93580 0.95142 0.97115 1.20436 1.00139 0.96759 0.94259 1.18127 0.81359 0.83796 0.83841 1.90752 1.48360 1.64665 1.38737 1.48172 1.45003 1.30953 1.07065 1.22256 0.95209 0.99841 0.90252 1.19010 0.87067 0.79382 0.98719 0.91695 1.22094 0.98567 1.02394 0.97567 1.21238 1.12646 0.99175 1.23640 0.92307 1.24891 0.97519 0.94906 0.96414 1.69860 1.36052 1.04070 1.42423 0.86538 0.81452 0.77827 0.81466 1.20208 1.21124 1.20220 1.22283 0.96120 0.92435 1.00291 1.21389 0.99645 0.98345 0.96686 1.21302 0.93103 1.00183 1.08115 1.21223 1.00251 0.90654 0.92761 0.89741 0.88784 0.88642 0.84146 0.84269 0.84599 0.83897 0.92355 0.90966 0.91095 0.96846 0.88677 0.95022 0.92524 0.82053 0.84772 0.84223 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 10.17 36.00 0.37 -0.73 16 2 C 0.40 3.49 7.20 -30.82 -0.22 3.27 16 3 O -0.47 -5.56 17.10 5.54 0.09 -5.47 16 4 C -0.21 -1.85 5.87 -105.06 -0.62 -2.47 16 5 C -0.02 -0.19 9.57 -39.31 -0.38 -0.57 16 6 C -0.16 -1.39 9.95 -39.67 -0.39 -1.78 16 7 C 0.16 1.58 6.62 -38.94 -0.26 1.32 16 8 O -0.25 -2.70 9.96 -2.25 -0.02 -2.72 16 9 C 0.09 0.94 4.52 -39.01 -0.18 0.77 16 10 C -0.13 -1.42 9.97 -39.49 -0.39 -1.81 16 11 C -0.05 -0.68 9.58 -39.22 -0.38 -1.05 16 12 C -0.11 -1.70 5.56 -104.95 -0.58 -2.29 16 13 C 0.54 10.85 7.51 -12.43 -0.09 10.76 16 14 O -0.55 -13.01 15.90 5.29 0.08 -12.92 16 15 N -0.58 -11.83 2.75 -176.47 -0.49 -12.31 16 16 C 0.07 1.05 7.98 59.85 0.48 1.52 16 17 C 0.26 6.35 2.63 -69.09 -0.18 6.17 16 18 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 19 C -0.15 -3.42 8.93 37.16 0.33 -3.09 16 20 C -0.53 -13.71 8.37 -34.44 -0.29 -14.00 16 21 H 0.06 1.48 7.47 -52.48 -0.39 1.09 16 22 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 23 N -0.89 -24.39 11.32 55.43 0.63 -23.77 16 24 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.09 -1.14 7.53 -39.22 -0.30 -1.44 16 29 C -0.14 -1.51 8.66 -39.49 -0.34 -1.85 16 30 C -0.21 -1.92 8.87 -39.67 -0.35 -2.27 16 31 C -0.03 -0.24 9.38 -39.31 -0.37 -0.61 16 32 H 0.08 0.32 5.67 -51.93 -0.29 0.03 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.14 1.10 7.66 -52.48 -0.40 0.70 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.14 1.88 7.81 -52.48 -0.41 1.47 16 39 H 0.06 0.84 7.02 -51.93 -0.36 0.48 16 40 H 0.07 1.13 6.46 -51.93 -0.34 0.79 16 41 H 0.07 0.89 4.91 -51.93 -0.25 0.64 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 44 H 0.03 0.67 6.70 -51.93 -0.35 0.32 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.16 1.86 4.20 -52.49 -0.22 1.64 16 47 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.14 1.33 6.19 -52.49 -0.33 1.00 16 49 H 0.14 0.75 6.02 -52.49 -0.32 0.43 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -32.19 402.07 -8.91 -41.09 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.01 Total: 3.20 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -4.24 Total: -8.52 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.14 Total: -36.08 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.19 -8.91 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089849342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.695 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds