Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21296 * 120.00189 * 2 1 4 4 C 1.46863 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.40035 * 120.11625 * 186.27863 * 4 2 1 6 6 C 1.37119 * 119.89009 * 179.97438 * 5 4 2 7 7 C 1.39102 * 120.10963 * 359.97438 * 6 5 4 8 8 O 1.35649 * 119.88316 * 179.97438 * 7 6 5 9 9 C 1.35710 * 117.99836 * 180.88344 * 8 7 6 10 10 C 1.39012 * 119.91137 * 254.89319 * 9 8 7 11 11 C 1.37704 * 120.08413 * 180.02562 * 10 9 8 12 12 C 1.39729 * 119.91116 * 359.97438 * 11 10 9 13 13 C 1.47619 * 120.08540 * 180.02562 * 12 11 10 14 14 O 1.21587 * 119.99467 * 22.69328 * 13 12 11 15 15 N 1.34773 * 120.00281 * 202.68885 * 13 12 11 16 16 C 1.46498 * 119.99640 * 4.73441 * 15 13 12 17 17 C 1.46499 * 119.99953 * 184.73190 * 15 13 12 18 18 H 1.08998 * 109.47372 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47014 * 240.00062 * 17 15 13 20 20 C 1.50698 * 109.47014 * 120.00372 * 17 15 13 21 21 H 1.08003 * 120.00309 * 359.97438 * 20 17 15 22 22 C 1.37874 * 119.99880 * 180.02562 * 20 17 15 23 23 N 1.31507 * 120.00293 * 359.97438 * 22 20 17 24 24 Si 1.86808 * 119.99835 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47468 * 59.99734 * 24 22 20 26 26 H 1.48496 * 109.47157 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46884 * 299.99627 * 24 22 20 28 28 C 1.39734 * 119.83204 * 0.27849 * 12 11 10 29 29 C 1.37699 * 119.91060 * 359.42315 * 28 12 11 30 30 C 1.39100 * 120.22567 * 0.26172 * 7 6 5 31 31 C 1.37109 * 120.11271 * 359.48007 * 30 7 6 32 32 H 1.09003 * 109.47586 * 183.59738 * 1 2 3 33 33 H 1.09003 * 109.47291 * 303.60194 * 1 2 3 34 34 H 1.09004 * 109.46815 * 63.60060 * 1 2 3 35 35 H 1.08008 * 120.05515 * 359.95516 * 5 4 2 36 36 H 1.07999 * 119.94500 * 179.97438 * 6 5 4 37 37 H 1.08005 * 119.96444 * 0.02562 * 10 9 8 38 38 H 1.08004 * 120.04282 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47169 * 263.77649 * 16 15 13 40 40 H 1.09001 * 109.46960 * 143.78072 * 16 15 13 41 41 H 1.08999 * 109.47354 * 23.78057 * 16 15 13 42 42 H 1.08995 * 109.47264 * 59.99907 * 19 17 15 43 43 H 1.09003 * 109.47351 * 179.97438 * 19 17 15 44 44 H 1.08999 * 109.47523 * 300.00391 * 19 17 15 45 45 H 0.97003 * 120.00602 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.04373 * 179.72048 * 28 12 11 47 47 H 1.07998 * 119.95875 * 180.27507 * 29 28 12 48 48 H 1.07997 * 119.93718 * 179.71982 * 30 7 6 49 49 H 1.08000 * 120.05912 * 180.23281 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6353 -1.2782 0.1330 6 6 4.3163 -2.4684 0.1335 7 6 3.6245 -3.6682 0.0032 8 8 4.3028 -4.8429 0.0037 9 6 3.5916 -5.9892 -0.1441 10 6 3.3690 -6.8133 0.9531 11 6 2.6483 -7.9775 0.8071 12 6 2.1401 -8.3299 -0.4459 13 6 1.3666 -9.5768 -0.6068 14 8 0.8187 -10.0805 0.3547 15 7 1.2676 -10.1568 -1.8193 16 6 2.0115 -9.6090 -2.9562 17 6 0.4161 -11.3352 -2.0003 18 1 -0.0531 -11.5937 -1.0510 19 6 1.2676 -12.5100 -2.4855 20 6 -0.6503 -11.0323 -3.0211 21 1 -0.6900 -10.0593 -3.4881 22 6 -1.5757 -11.9971 -3.3582 23 7 -1.5277 -13.1817 -2.7893 24 14 -2.8971 -11.6219 -4.6243 25 1 -2.2580 -11.2704 -5.9177 26 1 -3.7611 -12.8158 -4.8068 27 1 -3.7233 -10.4809 -4.1542 28 6 2.3706 -7.5016 -1.5475 29 6 3.0870 -6.3359 -1.3921 30 6 2.2402 -3.6670 -0.1336 31 6 1.5496 -2.4826 -0.1299 32 1 -0.3634 -1.0256 0.0645 33 1 -0.3634 0.5687 0.8560 34 1 -0.3633 0.4569 -0.9205 35 1 4.1734 -0.3472 0.2344 36 1 5.3914 -2.4743 0.2352 37 1 3.7617 -6.5401 1.9215 38 1 2.4761 -8.6174 1.6599 39 1 1.3630 -8.9464 -3.5294 40 1 2.3527 -10.4244 -3.5940 41 1 2.8722 -9.0486 -2.5912 42 1 2.0389 -12.7290 -1.7472 43 1 0.6342 -13.3869 -2.6197 44 1 1.7366 -12.2513 -3.4348 45 1 -2.1790 -13.8604 -3.0262 46 1 1.9833 -7.7729 -2.5185 47 1 3.2617 -5.6930 -2.2421 48 1 1.7083 -4.6010 -0.2390 49 1 0.4745 -2.4829 -0.2324 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089849342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -35.312199 kcal Electronic energy + Delta-G solvation = -31737.437432 eV Core-core repulsion = 27402.937325 eV Total energy + Delta-G solvation = -4334.500107 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.26515 -41.25532 -40.59104 -39.08233 -38.02378 -37.27027 -34.96589 -33.10629 -32.56509 -31.92036 -31.85125 -30.62512 -29.67632 -28.01986 -27.30351 -25.67531 -24.40390 -24.00337 -23.46504 -22.52629 -20.95384 -20.59115 -19.90040 -18.62025 -18.22916 -18.12810 -17.56721 -17.38249 -16.94039 -16.41597 -16.27372 -16.07773 -15.96654 -15.66226 -15.59893 -15.20471 -14.93419 -14.76224 -14.68105 -14.55986 -14.44415 -14.08980 -13.82434 -13.66748 -13.47138 -13.38684 -13.18537 -12.99728 -12.94697 -12.87699 -12.78065 -12.69038 -12.53073 -12.18657 -12.13482 -11.99914 -11.73535 -11.18569 -10.82552 -10.79849 -10.50921 -10.22891 -10.12153 -9.92343 -9.42899 -9.35346 -8.14025 -6.31033 -0.49574 -0.35841 0.19769 0.28940 1.35236 1.43575 1.45646 1.52931 1.60748 2.07308 2.24016 2.46135 2.68242 2.72524 3.12871 3.14198 3.56118 3.63060 3.73583 3.76214 3.81752 4.02607 4.11416 4.16136 4.24589 4.30433 4.35425 4.40751 4.55189 4.64097 4.64841 4.67074 4.72441 4.87049 4.88407 4.93099 4.97361 5.00230 5.03481 5.05791 5.09478 5.15650 5.22664 5.25790 5.35923 5.42821 5.46128 5.60095 5.65390 5.70359 6.01596 6.14191 6.37198 6.52868 6.73444 6.76056 7.24871 7.43134 8.90276 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.001998 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.012165 B =14013.525567 C =15521.561893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.401 3.599 3 O -0.507 6.507 4 C -0.222 4.222 5 C -0.030 4.030 6 C -0.160 4.160 7 C 0.148 3.852 8 O -0.256 6.256 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.055 4.055 12 C -0.134 4.134 13 C 0.534 3.466 14 O -0.600 6.600 15 N -0.590 5.590 16 C 0.063 3.937 17 C 0.261 3.739 18 H 0.010 0.990 19 C -0.134 4.134 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.966 3.034 25 H -0.261 1.261 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.085 4.085 29 C -0.130 4.130 30 C -0.215 4.215 31 C -0.024 4.024 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.018 0.982 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.172 0.828 47 H 0.160 0.840 48 H 0.138 0.862 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 23.107 2.250 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.283 3.717 3 O -0.387 6.387 4 C -0.224 4.224 5 C -0.048 4.048 6 C -0.178 4.178 7 C 0.105 3.895 8 O -0.167 6.167 9 C 0.055 3.945 10 C -0.139 4.139 11 C -0.074 4.074 12 C -0.137 4.137 13 C 0.324 3.676 14 O -0.484 6.484 15 N -0.318 5.318 16 C -0.078 4.078 17 C 0.159 3.841 18 H 0.028 0.972 19 C -0.193 4.193 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.186 4.186 23 N -0.556 5.556 24 Si 0.791 3.209 25 H -0.186 1.186 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.103 4.103 29 C -0.148 4.148 30 C -0.234 4.234 31 C -0.042 4.042 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.152 0.848 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.189 0.811 47 H 0.178 0.822 48 H 0.156 0.844 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.625 23.150 2.712 25.616 hybrid contribution -0.928 -0.759 -0.325 1.242 sum 9.697 22.391 2.387 24.517 Atomic orbital electron populations 1.22298 0.91106 1.06475 1.05848 1.22840 0.93142 0.86785 0.68937 1.90534 1.73125 1.35554 1.39456 1.20633 0.94884 0.95345 1.11489 1.21233 0.93320 0.98045 0.92181 1.20438 1.01778 0.88675 1.06932 1.19725 0.91118 0.84964 0.93722 1.84279 1.34769 1.11272 1.86417 1.18954 0.95561 0.86316 0.93709 1.21247 0.98859 0.94541 0.99292 1.21139 0.94100 0.95877 0.96252 1.20053 1.01920 0.95539 0.96209 1.18897 0.80917 0.84911 0.82877 1.90707 1.50709 1.66561 1.40378 1.48129 1.44863 1.30055 1.08799 1.22567 0.96130 1.00290 0.88842 1.18596 0.87977 0.81717 0.95763 0.97186 1.21891 0.97974 1.00847 0.98565 1.21518 1.13120 0.99376 1.23583 0.91651 1.25755 0.99708 0.94729 0.98370 1.70016 1.36852 1.04985 1.43786 0.85494 0.78610 0.77372 0.79453 1.18578 1.21225 1.20100 1.22269 0.95989 0.92378 0.99618 1.21564 0.98247 0.97609 0.97373 1.21366 0.92933 1.00565 1.08488 1.21462 1.01518 0.89726 0.91449 0.87849 0.88001 0.87603 0.83881 0.82922 0.82594 0.84835 0.90835 0.91064 0.87781 0.96279 0.91262 0.93122 0.92644 0.81105 0.82211 0.84399 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 10.17 71.23 0.72 -0.90 16 2 C 0.40 6.30 7.20 27.94 0.20 6.50 16 3 O -0.51 -11.71 17.10 -3.08 -0.05 -11.76 16 4 C -0.22 -3.38 5.87 -20.15 -0.12 -3.49 16 5 C -0.03 -0.46 9.57 22.44 0.21 -0.25 16 6 C -0.16 -2.40 9.95 22.21 0.22 -2.18 16 7 C 0.15 2.50 6.62 22.68 0.15 2.65 16 8 O -0.26 -4.72 9.96 -30.96 -0.31 -5.03 16 9 C 0.10 1.84 4.52 22.64 0.10 1.94 16 10 C -0.12 -2.43 9.97 22.33 0.22 -2.21 16 11 C -0.05 -1.41 9.58 22.50 0.22 -1.20 16 12 C -0.13 -3.97 5.56 -20.08 -0.11 -4.08 16 13 C 0.53 22.03 7.51 86.72 0.65 22.68 16 14 O -0.60 -30.44 15.90 -3.99 -0.06 -30.51 16 15 N -0.59 -24.25 2.75 -830.48 -2.29 -26.53 16 16 C 0.06 1.84 7.98 127.77 1.02 2.86 16 17 C 0.26 13.33 2.63 44.24 0.12 13.45 16 18 H 0.01 0.62 6.91 -2.39 -0.02 0.61 16 19 C -0.13 -6.37 8.93 71.98 0.64 -5.73 16 20 C -0.54 -28.20 8.37 25.60 0.21 -27.98 16 21 H 0.07 3.26 7.47 -2.91 -0.02 3.23 16 22 C 0.01 0.75 5.30 84.65 0.45 1.20 16 23 N -0.92 -51.99 11.32 21.44 0.24 -51.75 16 24 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 26 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 28 C -0.08 -1.86 7.53 22.50 0.17 -1.69 16 29 C -0.13 -2.30 8.66 22.33 0.19 -2.10 16 30 C -0.21 -3.34 8.87 22.21 0.20 -3.15 16 31 C -0.02 -0.30 9.38 22.44 0.21 -0.09 16 32 H 0.10 0.42 5.67 -2.39 -0.01 0.41 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.14 2.10 7.66 -2.91 -0.02 2.08 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.13 3.65 7.81 -2.91 -0.02 3.63 16 39 H 0.07 1.93 7.02 -2.39 -0.02 1.92 16 40 H 0.07 2.09 6.46 -2.39 -0.02 2.08 16 41 H 0.10 2.34 4.91 -2.39 -0.01 2.33 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 44 H 0.05 2.15 6.70 -2.39 -0.02 2.13 16 45 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.17 3.41 4.20 -2.91 -0.01 3.40 16 47 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 48 H 0.14 2.21 6.19 -2.91 -0.02 2.19 16 49 H 0.17 1.15 6.02 -2.91 -0.02 1.14 16 Total: -1.00 -73.72 402.07 6.25 -67.48 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.00 Total: 18.19 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.69 Total: -3.78 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.04 Total: -78.28 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.42 Total: -47.30 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.72 6.25 -67.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089849342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.165 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds