Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47242 * 269.99993 * 3 2 1 5 5 H 1.48495 * 109.47038 * 30.00034 * 3 2 1 6 6 H 1.48496 * 109.47070 * 150.00096 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00199 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99640 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00282 * 95.43782 * 10 9 7 12 12 C 1.53007 * 109.47004 * 85.02476 * 11 10 9 13 13 C 1.52994 * 117.51925 * 116.28249 * 12 11 10 14 14 C 1.52996 * 117.49860 * 184.91669 * 12 11 10 15 15 C 1.34780 * 120.00157 * 275.44008 * 10 9 7 16 16 O 1.21549 * 120.00555 * 185.57491 * 15 10 9 17 17 C 1.47837 * 119.99397 * 5.57645 * 15 10 9 18 18 N 1.34575 * 126.02248 * 174.83819 * 17 15 10 19 19 C 1.30866 * 107.28951 * 179.83386 * 18 17 15 20 20 C 1.50698 * 126.20350 * 180.19161 * 19 18 17 21 21 C 1.52995 * 117.49960 * 9.01599 * 20 19 18 22 22 C 1.53004 * 117.49687 * 300.35449 * 20 19 18 23 23 N 1.34888 * 107.58848 * 0.42029 * 19 18 17 24 24 C 1.40143 * 125.76703 * 179.76813 * 23 19 18 25 25 C 1.38851 * 120.07103 * 324.71119 * 24 23 19 26 26 C 1.38117 * 119.93490 * 179.72381 * 25 24 23 27 27 C 1.38283 * 120.06356 * 0.52617 * 26 25 24 28 28 C 1.38284 * 120.13867 * 359.76780 * 27 26 25 29 29 C 1.38114 * 120.06834 * 359.95750 * 28 27 26 30 30 N 1.28846 * 108.46035 * 359.73332 * 23 19 18 31 31 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47335 * 60.00076 * 9 7 2 33 33 H 1.09004 * 109.46833 * 299.99633 * 9 7 2 34 34 H 1.09000 * 109.47251 * 325.02324 * 11 10 9 35 35 H 1.09006 * 109.47595 * 205.01813 * 11 10 9 36 36 H 1.09004 * 115.54627 * 330.58025 * 12 11 10 37 37 H 1.09009 * 117.49844 * 214.96701 * 13 12 11 38 38 H 1.08993 * 117.50163 * 359.97438 * 13 12 11 39 39 H 1.09000 * 117.50272 * 359.96737 * 14 12 11 40 40 H 1.09003 * 117.50285 * 144.99614 * 14 12 11 41 41 H 1.08995 * 115.55202 * 154.69366 * 20 19 18 42 42 H 1.09002 * 117.50033 * 0.02562 * 21 20 19 43 43 H 1.09005 * 117.49812 * 145.02556 * 21 20 19 44 44 H 1.08999 * 117.50176 * 214.97987 * 22 20 19 45 45 H 1.09003 * 117.49531 * 359.97438 * 22 20 19 46 46 H 1.08006 * 120.03038 * 359.97438 * 25 24 23 47 47 H 1.07996 * 119.97030 * 180.27545 * 26 25 24 48 48 H 1.07998 * 119.93092 * 179.74400 * 27 26 25 49 49 H 1.07995 * 119.96539 * 179.97438 * 28 27 26 50 50 H 1.07997 * 120.03752 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.3579 -3.2244 -1.2649 12 6 5.8009 -2.8694 -1.6297 13 6 6.8174 -4.0114 -1.6848 14 6 6.3290 -3.3588 -2.9796 15 6 4.1198 -3.2488 1.1599 16 8 4.6193 -4.3568 1.1712 17 6 3.6437 -2.6398 2.4201 18 7 3.6133 -3.2370 3.6257 19 6 3.1308 -2.3687 4.4778 20 6 2.9172 -2.5931 5.9526 21 6 3.4871 -3.8756 6.5618 22 6 1.9763 -3.7267 6.3657 23 7 2.8546 -1.2383 3.7956 24 6 2.3167 -0.0641 4.3394 25 6 1.3851 -0.1363 5.3666 26 6 0.8610 1.0229 5.9044 27 6 1.2550 2.2542 5.4135 28 6 2.1780 2.3292 4.3865 29 6 2.7100 1.1738 3.8484 30 7 3.1697 -1.4204 2.5596 31 1 -0.4850 0.8400 -0.0004 32 1 3.8745 -0.6808 0.8905 33 1 3.8752 -0.6796 -0.8895 34 1 3.6886 -2.8795 -2.0530 35 1 4.2659 -4.3052 -1.1570 36 1 6.1510 -1.9006 -1.2734 37 1 7.8366 -3.7940 -1.3649 38 1 6.4586 -5.0159 -1.4608 39 1 5.6488 -3.9340 -3.6077 40 1 7.0268 -2.7120 -3.5115 41 1 2.9254 -1.6954 6.5707 42 1 4.0170 -4.5569 5.8961 43 1 3.8699 -3.8217 7.5811 44 1 1.3658 -3.5750 7.2558 45 1 1.5115 -4.3098 5.5707 46 1 1.0737 -1.0978 5.7473 47 1 0.1398 0.9676 6.7063 48 1 0.8408 3.1591 5.8329 49 1 2.4835 3.2923 4.0051 50 1 3.4311 1.2330 3.0467 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089853275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = 163.458425 kcal Electronic energy + Delta-G solvation = -33997.486716 eV Core-core repulsion = 29801.617364 eV Total energy + Delta-G solvation = -4195.869353 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.20453 -39.34639 -38.90885 -37.26832 -36.90878 -34.84930 -34.15895 -32.35677 -31.49247 -30.88757 -29.58706 -28.28413 -26.78710 -24.56805 -24.06878 -22.71362 -22.51978 -22.31644 -22.10119 -21.62252 -20.41218 -20.20016 -18.88568 -17.89446 -17.00898 -16.82969 -16.29387 -16.23361 -15.81563 -15.28992 -14.89874 -14.80665 -14.55562 -14.42858 -14.18191 -14.05305 -13.54887 -13.46007 -13.21100 -12.87971 -12.61571 -12.40320 -12.22101 -11.98520 -11.86452 -11.58341 -11.46246 -11.40351 -11.29182 -11.19804 -10.94328 -10.89293 -10.61547 -10.47117 -10.34621 -10.31268 -10.11427 -9.70654 -9.64930 -9.56515 -9.40316 -9.12189 -9.06771 -8.58190 -8.39138 -7.77166 -6.10313 -4.06118 0.87402 1.25820 2.11219 2.45758 2.52878 3.18674 3.26439 3.27202 3.45247 3.60420 3.83243 4.02777 4.10799 4.24372 4.35341 4.54422 4.75315 4.78815 4.80646 4.91247 4.94850 5.01773 5.04239 5.19982 5.22614 5.25990 5.27018 5.32188 5.47321 5.57052 5.59326 5.68614 5.72115 5.82627 5.87888 5.97158 6.03509 6.11777 6.15780 6.17326 6.20418 6.24341 6.34216 6.37073 6.45733 6.47378 6.59890 6.64707 6.78370 6.95548 7.13486 7.40311 7.57153 8.05450 8.41092 8.54640 8.88302 8.94493 9.50817 11.03259 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.004513 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.767052 B = 6202.619762 C = 8653.420269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.072 0.928 9 C 0.201 3.799 10 N -0.574 5.574 11 C 0.152 3.848 12 C -0.164 4.164 13 C -0.174 4.174 14 C -0.179 4.179 15 C 0.617 3.383 16 O -0.540 6.540 17 C 0.151 3.849 18 N -0.456 5.456 19 C 0.231 3.769 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.158 4.158 23 N -0.255 5.255 24 C 0.142 3.858 25 C -0.116 4.116 26 C -0.104 4.104 27 C -0.114 4.114 28 C -0.104 4.104 29 C -0.096 4.096 30 N -0.207 5.207 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.131 0.869 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 2.175 11.901 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.119 4.119 3 Si 0.689 3.311 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.090 0.910 9 C 0.080 3.920 10 N -0.304 5.304 11 C 0.029 3.971 12 C -0.183 4.183 13 C -0.211 4.211 14 C -0.216 4.216 15 C 0.401 3.599 16 O -0.415 6.415 17 C -0.127 4.127 18 N -0.180 5.180 19 C -0.042 4.042 20 C -0.113 4.113 21 C -0.185 4.185 22 C -0.196 4.196 23 N -0.045 5.045 24 C 0.051 3.949 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.116 4.116 30 N -0.042 5.042 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.155 0.845 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.149 0.851 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.857 1.748 11.340 12.882 hybrid contribution 0.020 1.313 -0.067 1.315 sum 5.877 3.061 11.273 13.076 Atomic orbital electron populations 1.69891 1.06119 1.26646 1.50848 1.24690 0.94453 0.98328 0.94466 0.87089 0.80724 0.84656 0.78657 1.20332 1.20891 1.18720 1.21172 0.88708 0.94636 1.50448 0.91001 1.20165 0.96340 0.77432 0.98054 1.47664 1.62331 1.15946 1.04475 1.20961 0.92452 0.98179 0.85498 1.22774 0.95952 0.99114 1.00465 1.22973 0.98976 0.98108 1.01000 1.22915 1.03799 1.04176 0.90736 1.16239 0.78443 0.84113 0.81071 1.90715 1.45267 1.19625 1.85907 1.23661 1.05290 0.89157 0.94598 1.71098 1.19315 1.28493 0.99082 1.23792 1.00792 0.83687 0.95890 1.20245 1.09078 0.95579 0.86391 1.23046 0.96225 0.97536 1.01725 1.23118 0.93481 0.99714 1.03318 1.44588 1.43313 1.11021 1.05553 1.17492 0.97323 0.83397 0.96648 1.21108 0.95522 1.00286 0.96734 1.20968 0.99603 0.91476 1.00185 1.21264 0.97269 0.98029 0.96722 1.21077 0.96947 0.97985 0.96287 1.21147 1.00398 0.90538 0.99502 1.75248 1.13526 1.19408 0.96066 0.92783 0.92633 0.95373 0.89517 0.90116 0.87875 0.89444 0.88547 0.88759 0.89129 0.85430 0.87013 0.87960 0.87738 0.87933 0.84544 0.84853 0.85321 0.85070 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.86 20.44 27.42 -169.99 -4.66 15.78 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.86 6.39 56.52 0.36 -5.49 16 7 C -0.51 -14.01 8.58 -34.44 -0.30 -14.31 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 9 C 0.20 4.76 3.84 -5.19 -0.02 4.74 16 10 N -0.57 -12.75 2.47 -176.17 -0.44 -13.19 16 11 C 0.15 2.85 5.68 -4.04 -0.02 2.83 16 12 C -0.16 -2.64 6.01 -90.62 -0.54 -3.18 16 13 C -0.17 -2.49 10.18 -26.73 -0.27 -2.76 16 14 C -0.18 -2.32 10.25 -26.73 -0.27 -2.60 16 15 C 0.62 14.61 7.63 -12.33 -0.09 14.52 16 16 O -0.54 -13.27 16.65 5.32 0.09 -13.18 16 17 C 0.15 3.54 7.59 -156.30 -1.19 2.35 16 18 N -0.46 -9.76 11.02 -8.47 -0.09 -9.85 16 19 C 0.23 4.21 7.31 -155.25 -1.14 3.07 16 20 C -0.09 -1.18 4.22 -91.77 -0.39 -1.56 16 21 C -0.15 -1.62 10.15 -26.69 -0.27 -1.89 16 22 C -0.16 -1.70 10.22 -26.69 -0.27 -1.98 16 23 N -0.26 -5.03 3.47 -7.99 -0.03 -5.06 16 24 C 0.14 2.43 6.29 -83.60 -0.53 1.90 16 25 C -0.12 -1.57 8.27 -39.40 -0.33 -1.90 16 26 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 27 C -0.11 -1.27 10.04 -39.55 -0.40 -1.66 16 28 C -0.10 -1.39 10.04 -39.61 -0.40 -1.78 16 29 C -0.10 -1.59 9.71 -39.40 -0.38 -1.98 16 30 N -0.21 -4.72 7.37 32.08 0.24 -4.49 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 1.35 4.70 -51.93 -0.24 1.11 16 33 H 0.03 0.64 7.46 -51.93 -0.39 0.25 16 34 H 0.09 1.59 8.11 -51.93 -0.42 1.16 16 35 H 0.08 1.52 7.09 -51.93 -0.37 1.15 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.10 1.42 8.03 -51.93 -0.42 1.01 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.13 1.33 6.95 -51.93 -0.36 0.97 16 42 H 0.11 1.46 7.91 -51.93 -0.41 1.05 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.14 1.65 6.28 -52.48 -0.33 1.32 16 47 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 48 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 50 H 0.14 2.43 7.82 -52.49 -0.41 2.02 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -34.48 416.36 -12.32 -46.80 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.18 Total: 8.38 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -7.30 Total: -5.52 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.45 Total: -58.53 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.66 Total: 15.78 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.48 -12.32 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089853275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.260 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds