Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47244 * 2 1 4 4 C 1.46505 * 120.00113 * 274.99317 * 3 2 1 5 5 C 1.50697 * 109.47421 * 275.00682 * 4 3 2 6 6 H 1.08003 * 119.99580 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00138 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00198 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00028 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47250 * 89.99927 * 9 7 5 11 11 H 1.48502 * 109.47450 * 210.00133 * 9 7 5 12 12 H 1.48500 * 109.47228 * 329.99953 * 9 7 5 13 13 S 1.65601 * 120.00567 * 94.99830 * 3 2 1 14 14 O 1.42095 * 106.40652 * 156.45729 * 13 3 2 15 15 O 1.42099 * 106.39951 * 23.53503 * 13 3 2 16 16 C 1.76200 * 107.21532 * 269.99977 * 13 3 2 17 17 C 1.33368 * 125.19464 * 90.00231 * 16 13 3 18 18 C 1.38452 * 114.92850 * 180.25003 * 17 16 13 19 19 C 1.50697 * 122.55087 * 179.72455 * 18 17 16 20 20 C 1.33483 * 114.89271 * 359.48256 * 18 17 16 21 21 Br 1.89098 * 125.20726 * 180.21279 * 20 18 17 22 22 S 1.75878 * 125.19267 * 269.96776 * 16 13 3 23 23 H 1.08993 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46728 * 300.00916 * 1 2 3 25 25 H 1.09002 * 109.46540 * 60.00444 * 1 2 3 26 26 H 1.08993 * 109.47125 * 239.99021 * 2 1 3 27 27 H 1.09002 * 109.46540 * 119.99556 * 2 1 3 28 28 H 1.09007 * 109.46305 * 35.00163 * 4 3 2 29 29 H 1.08996 * 109.47245 * 155.00095 * 4 3 2 30 30 H 0.96996 * 120.00299 * 179.97438 * 8 7 5 31 31 H 1.08002 * 122.53189 * 359.97020 * 17 16 13 32 32 H 1.08998 * 109.47481 * 90.00107 * 19 18 17 33 33 H 1.08999 * 109.47007 * 209.99724 * 19 18 17 34 34 H 1.08990 * 109.47546 * 329.99547 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1585 2.1086 -1.2639 5 6 3.4950 1.7886 -1.8823 6 1 4.1725 1.1114 -1.3835 7 6 3.8528 2.3603 -3.0848 8 7 5.0193 2.0815 -3.6242 9 14 2.6807 3.5310 -3.9479 10 1 2.9440 4.9199 -3.4930 11 1 2.8857 3.4437 -5.4161 12 1 1.2805 3.1601 -3.6208 13 16 2.4123 2.1203 1.4286 14 8 3.3285 3.1570 1.1049 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9119 2.0251 17 6 0.0502 2.3517 2.8284 18 6 -1.0178 3.1670 3.1623 19 6 -2.1417 2.7064 4.0542 20 6 -0.9734 4.3938 2.6381 21 35 -2.2721 5.7418 2.9069 22 16 0.4738 4.5620 1.6529 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5140 -0.8898 27 1 1.8933 -0.5138 0.8901 28 1 1.3619 1.8096 -1.9453 29 1 2.0924 3.1801 -1.0757 30 1 5.2709 2.4834 -4.4704 31 1 0.1410 1.3371 3.1873 32 1 -1.8980 2.9326 5.0922 33 1 -3.0609 3.2221 3.7761 34 1 -2.2795 1.6313 3.9393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094447804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = -37.686068 kcal Electronic energy + Delta-G solvation = -21201.995329 eV Core-core repulsion = 17821.229286 eV Total energy + Delta-G solvation = -3380.766042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 366.970 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.65234 -36.81307 -36.30267 -35.39266 -32.65255 -32.46795 -30.63867 -30.33970 -27.33809 -27.22712 -23.74569 -22.95452 -21.63091 -19.38447 -18.81027 -17.87922 -16.99133 -16.91230 -16.29437 -15.62091 -14.59691 -14.55996 -14.27064 -14.08617 -13.64198 -13.47494 -12.88034 -12.74464 -12.68046 -12.54125 -12.42490 -12.09213 -12.04905 -11.66045 -11.58313 -11.42609 -11.38759 -11.18073 -11.02356 -10.94821 -10.58492 -10.52890 -10.45298 -10.23391 -9.59149 -9.14238 -8.64594 -8.61709 -8.24892 -6.11280 -4.11218 0.12475 0.66344 0.81968 1.49105 1.53946 2.08942 3.24943 3.30070 3.32407 3.46891 4.12265 4.35605 4.64224 4.78760 4.91533 5.04196 5.16715 5.28698 5.30356 5.46684 5.55537 5.58678 5.62628 5.78944 5.82788 6.00549 6.14384 6.40661 6.46024 6.67545 6.99107 7.26539 7.52494 8.44624 8.93276 9.47289 11.02048 Molecular weight = 366.97amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003964 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.955812 B = 7061.780457 C = 8047.337804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 N -0.969 5.969 4 C 0.225 3.775 5 C -0.532 4.532 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.264 1.264 13 S 2.702 3.298 14 O -0.931 6.931 15 O -0.959 6.959 16 C -0.767 4.767 17 C -0.004 4.004 18 C -0.085 4.085 19 C -0.103 4.103 20 C -0.193 4.193 21 Br 0.015 6.985 22 S 0.279 5.721 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.266 0.734 31 H 0.161 0.839 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.720 3.398 14.340 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 N -0.809 5.809 4 C 0.102 3.898 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.692 3.308 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.188 1.188 13 S 2.785 3.215 14 O -0.921 6.921 15 O -0.949 6.949 16 C -0.966 4.966 17 C -0.039 4.039 18 C -0.102 4.102 19 C -0.162 4.162 20 C -0.392 4.392 21 Br 0.099 6.901 22 S 0.547 5.453 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.669 5.208 13.763 22.994 hybrid contribution -1.570 -0.472 0.138 1.645 sum -19.238 4.736 13.901 24.203 Atomic orbital electron populations 1.22293 0.97141 1.01857 1.02082 1.21283 0.93056 0.82345 1.04476 1.57206 1.81089 1.21324 1.21288 1.19527 0.98684 0.90992 0.80625 1.21324 1.00700 1.29178 1.05950 0.90178 1.24828 0.95012 0.95968 0.96880 1.69881 1.20446 1.43859 1.18874 0.87009 0.81955 0.82407 0.79387 1.19626 1.20835 1.18822 1.02026 0.72931 0.73710 0.72840 1.93638 1.57307 1.57876 1.83249 1.93523 1.82247 1.55944 1.63233 1.36811 1.29249 1.11275 1.19216 1.19740 0.90144 1.00790 0.93249 1.19084 0.98547 0.91915 1.00663 1.20690 0.95019 1.02288 0.98171 1.26628 1.03153 0.98878 1.10543 1.96702 1.50459 1.46917 1.96028 1.84487 1.11022 1.06461 1.43300 0.91715 0.93333 0.91989 0.88812 0.89895 0.94407 0.95334 0.92440 0.82193 0.90307 0.90753 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.83 6.40 -4.04 -0.03 1.80 16 3 N -0.97 -18.90 2.77 -115.66 -0.32 -19.22 16 4 C 0.22 5.11 4.17 -5.19 -0.02 5.09 16 5 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16 6 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 7 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 13 S 2.70 52.10 5.79 -107.50 -0.62 51.48 16 14 O -0.93 -21.40 16.88 -57.17 -0.97 -22.37 16 15 O -0.96 -18.84 16.35 -57.17 -0.93 -19.77 16 16 C -0.77 -11.93 6.57 29.03 0.19 -11.74 16 17 C 0.00 -0.05 8.78 -41.20 -0.36 -0.41 16 18 C -0.09 -0.98 5.81 -106.21 -0.62 -1.59 16 19 C -0.10 -0.83 9.85 36.00 0.35 -0.48 16 20 C -0.19 -2.38 6.95 29.07 0.20 -2.18 16 21 Br 0.01 0.15 32.87 -68.01 -2.24 -2.08 16 22 S 0.28 4.10 23.22 -107.50 -2.50 1.60 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.56 7.26 -51.93 -0.38 0.19 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 27 H 0.08 1.24 6.91 -51.93 -0.36 0.88 16 28 H 0.04 0.81 7.16 -51.92 -0.37 0.44 16 29 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.16 1.72 8.05 -52.49 -0.42 1.30 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 7.27 -51.93 -0.38 0.18 16 34 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -32.43 334.95 -10.73 -43.16 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -3.97 Total: -3.28 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -0.34 Total: -24.35 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.45 Total: -45.39 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.90 Total: -42.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -3.12 Total: 53.09 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -2.24 Total: -2.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.43 -10.73 -43.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094447804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.476 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds