Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47244 * 2 1 4 4 C 1.46505 * 120.00113 * 274.99317 * 3 2 1 5 5 C 1.50697 * 109.47421 * 275.00682 * 4 3 2 6 6 H 1.08003 * 119.99580 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00138 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00198 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00028 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47250 * 89.99927 * 9 7 5 11 11 H 1.48502 * 109.47450 * 210.00133 * 9 7 5 12 12 H 1.48500 * 109.47228 * 329.99953 * 9 7 5 13 13 S 1.65601 * 120.00567 * 94.99830 * 3 2 1 14 14 O 1.42095 * 106.40652 * 156.45729 * 13 3 2 15 15 O 1.42099 * 106.39951 * 23.53503 * 13 3 2 16 16 C 1.76200 * 107.21532 * 269.99977 * 13 3 2 17 17 C 1.33368 * 125.19464 * 90.00231 * 16 13 3 18 18 C 1.38452 * 114.92850 * 180.25003 * 17 16 13 19 19 C 1.50697 * 122.55087 * 179.72455 * 18 17 16 20 20 C 1.33483 * 114.89271 * 359.48256 * 18 17 16 21 21 Br 1.89098 * 125.20726 * 180.21279 * 20 18 17 22 22 S 1.75878 * 125.19267 * 269.96776 * 16 13 3 23 23 H 1.08993 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46728 * 300.00916 * 1 2 3 25 25 H 1.09002 * 109.46540 * 60.00444 * 1 2 3 26 26 H 1.08993 * 109.47125 * 239.99021 * 2 1 3 27 27 H 1.09002 * 109.46540 * 119.99556 * 2 1 3 28 28 H 1.09007 * 109.46305 * 35.00163 * 4 3 2 29 29 H 1.08996 * 109.47245 * 155.00095 * 4 3 2 30 30 H 0.96996 * 120.00299 * 179.97438 * 8 7 5 31 31 H 1.08002 * 122.53189 * 359.97020 * 17 16 13 32 32 H 1.08998 * 109.47481 * 90.00107 * 19 18 17 33 33 H 1.08999 * 109.47007 * 209.99724 * 19 18 17 34 34 H 1.08990 * 109.47546 * 329.99547 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1585 2.1086 -1.2639 5 6 3.4950 1.7886 -1.8823 6 1 4.1725 1.1114 -1.3835 7 6 3.8528 2.3603 -3.0848 8 7 5.0193 2.0815 -3.6242 9 14 2.6807 3.5310 -3.9479 10 1 2.9440 4.9199 -3.4930 11 1 2.8857 3.4437 -5.4161 12 1 1.2805 3.1601 -3.6208 13 16 2.4123 2.1203 1.4286 14 8 3.3285 3.1570 1.1049 15 8 2.7095 1.0800 2.3499 16 6 0.9555 2.9119 2.0251 17 6 0.0502 2.3517 2.8284 18 6 -1.0178 3.1670 3.1623 19 6 -2.1417 2.7064 4.0542 20 6 -0.9734 4.3938 2.6381 21 35 -2.2721 5.7418 2.9069 22 16 0.4738 4.5620 1.6529 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5140 -0.8898 27 1 1.8933 -0.5138 0.8901 28 1 1.3619 1.8096 -1.9453 29 1 2.0924 3.1801 -1.0757 30 1 5.2709 2.4834 -4.4704 31 1 0.1410 1.3371 3.1873 32 1 -1.8980 2.9326 5.0922 33 1 -3.0609 3.2221 3.7761 34 1 -2.2795 1.6313 3.9393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094447804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -59.915022 kcal Electronic energy + Delta-G solvation = -21202.959248 eV Core-core repulsion = 17821.229286 eV Total energy + Delta-G solvation = -3381.729962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 366.970 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63779 -38.38672 -37.83135 -37.00180 -34.68891 -33.43807 -31.84889 -31.46839 -28.99012 -28.19088 -24.85148 -24.57241 -23.16809 -20.46701 -19.97943 -19.38049 -18.92742 -18.44858 -17.54711 -17.17862 -16.25576 -15.67890 -15.49864 -15.42839 -14.82721 -14.59548 -14.43085 -14.21448 -13.77977 -13.71573 -13.56431 -13.33588 -13.26025 -13.23492 -13.16954 -12.78145 -12.60404 -12.49226 -12.36539 -12.19554 -12.13004 -12.03894 -11.71754 -11.63185 -11.43845 -10.78043 -10.15104 -9.84658 -9.68262 -8.28592 -6.34182 -0.97573 -0.68797 -0.25225 0.45411 0.51643 1.11709 1.36374 1.39860 1.47582 2.00978 2.34974 2.66813 3.05222 3.34274 3.84597 3.90574 3.98282 4.19915 4.41276 4.42983 4.48366 4.67222 4.77413 4.81902 4.82770 5.00832 5.02884 5.05455 5.28153 5.37943 5.43436 5.47370 5.73653 6.29626 6.68979 7.28589 8.88716 Molecular weight = 366.97amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003964 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.955812 B = 7061.780457 C = 8047.337804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.979 5.979 4 C 0.233 3.767 5 C -0.541 4.541 6 H 0.033 0.967 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.932 3.068 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.228 1.228 13 S 2.711 3.289 14 O -0.982 6.982 15 O -0.972 6.972 16 C -0.784 4.784 17 C 0.018 3.982 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.185 4.185 21 Br 0.041 6.959 22 S 0.234 5.766 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.268 0.732 31 H 0.184 0.816 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 3.630 15.604 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.818 5.818 4 C 0.109 3.891 5 C -0.580 4.580 6 H 0.051 0.949 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.753 3.247 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.150 1.150 13 S 2.800 3.200 14 O -0.972 6.972 15 O -0.962 6.962 16 C -0.988 4.988 17 C -0.018 4.018 18 C -0.098 4.098 19 C -0.163 4.163 20 C -0.384 4.384 21 Br 0.125 6.875 22 S 0.502 5.498 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.202 0.798 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.858 5.389 15.030 27.068 hybrid contribution -0.308 -0.580 -0.074 0.661 sum -22.166 4.808 14.956 27.168 Atomic orbital electron populations 1.22236 0.93902 1.03873 1.02528 1.21543 0.95762 0.80521 1.04238 1.57116 1.81767 1.22699 1.20184 1.19262 0.96259 0.91490 0.82108 1.21642 1.02319 1.28002 1.06015 0.94860 1.25828 0.96909 0.97989 0.97842 1.70051 1.22996 1.45834 1.19700 0.85957 0.81230 0.79475 0.78002 1.19420 1.20278 1.15038 1.01153 0.73339 0.72961 0.72550 1.93573 1.60415 1.59249 1.83974 1.93494 1.83186 1.56342 1.63217 1.35978 1.28905 1.11878 1.22034 1.20177 0.89096 1.01743 0.90822 1.19439 0.98834 0.91131 1.00366 1.20853 0.93695 1.03714 0.98000 1.26819 1.02317 0.99873 1.09376 1.96741 1.48891 1.46114 1.95768 1.84630 1.13304 1.06587 1.45278 0.88878 0.91988 0.92405 0.90156 0.89175 0.92241 0.95114 0.92319 0.79840 0.88841 0.89953 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 10.24 71.98 0.74 -3.02 16 2 C 0.10 3.25 6.40 86.38 0.55 3.81 16 3 N -0.98 -38.29 2.77 -519.85 -1.44 -39.73 16 4 C 0.23 10.61 4.17 85.63 0.36 10.97 16 5 C -0.54 -31.05 9.94 25.60 0.25 -30.80 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 7 C 0.01 0.73 5.47 84.65 0.46 1.19 16 8 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 9 Si 0.93 42.39 27.47 68.60 1.88 44.28 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 13 S 2.71 105.78 5.79 -56.49 -0.33 105.46 16 14 O -0.98 -47.15 16.88 -128.00 -2.16 -49.31 16 15 O -0.97 -38.27 16.35 -128.00 -2.09 -40.36 16 16 C -0.78 -23.39 6.57 66.72 0.44 -22.95 16 17 C 0.02 0.40 8.78 21.22 0.19 0.59 16 18 C -0.08 -1.56 5.81 -20.89 -0.12 -1.68 16 19 C -0.10 -1.18 9.85 71.24 0.70 -0.48 16 20 C -0.18 -4.04 6.95 66.74 0.46 -3.58 16 21 Br 0.04 0.70 32.87 -20.37 -0.67 0.03 16 22 S 0.23 6.65 23.22 -56.49 -1.31 5.34 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.22 7.26 -2.39 -0.02 1.20 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 27 H 0.09 2.64 6.91 -2.39 -0.02 2.63 16 28 H 0.06 2.45 7.16 -2.38 -0.02 2.43 16 29 H 0.03 1.40 7.04 -2.39 -0.02 1.38 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.18 3.21 8.05 -2.91 -0.02 3.19 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.85 7.27 -2.39 -0.02 0.83 16 34 H 0.10 0.77 8.13 -2.39 -0.02 0.75 16 Total: -1.00 -74.22 334.95 -0.72 -74.94 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.07 Total: 4.50 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.03 Total: -45.96 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.14 Total: -98.90 kcal Atomic # 8 Polarization: -85.43 SS G_CDS: -4.25 Total: -89.68 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: 112.43 SS G_CDS: -1.64 Total: 110.79 kcal Atomic # 35 Polarization: 0.70 SS G_CDS: -0.67 Total: 0.03 kcal Total: -74.22 -0.72 -74.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094447804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.023 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds