Wall clock time and date at job start Tue Mar 31 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.52994 * 109.47310 * 239.99770 * 2 1 3 5 5 C 1.50703 * 109.47293 * 119.99802 * 2 1 3 6 6 C 1.36706 * 126.61018 * 218.05308 * 5 2 1 7 7 C 1.47424 * 125.77688 * 0.03859 * 6 5 2 8 8 O 1.21627 * 119.99803 * 77.03052 * 7 6 5 9 9 N 1.34771 * 120.00080 * 257.03467 * 7 6 5 10 10 C 1.36952 * 120.00262 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99570 * 359.97438 * 10 9 7 12 12 C 1.38986 * 119.99883 * 179.97438 * 10 9 7 13 13 N 1.31401 * 120.00842 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99852 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46734 * 59.99910 * 14 12 10 16 16 H 1.48500 * 109.47347 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47180 * 299.99827 * 14 12 10 18 18 N 1.34432 * 108.44866 * 180.02562 * 6 5 2 19 19 N 1.28750 * 109.58000 * 359.73532 * 18 6 5 20 20 N 1.35076 * 126.60769 * 38.06735 * 5 2 1 21 21 C 1.40289 * 126.60982 * 359.96945 * 20 5 2 22 22 C 1.38821 * 120.04801 * 16.31078 * 21 20 5 23 23 C 1.38092 * 119.97613 * 179.97438 * 22 21 20 24 24 C 1.38515 * 120.06306 * 359.97392 * 23 22 21 25 25 F 1.35102 * 119.95555 * 180.02562 * 24 23 22 26 26 C 1.38451 * 120.09244 * 0.04521 * 24 23 22 27 27 C 1.38233 * 120.02640 * 359.97438 * 26 24 23 28 28 Cl 1.73601 * 120.03435 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.47266 * 344.77243 * 1 2 3 30 30 H 1.09005 * 109.47393 * 104.77112 * 1 2 3 31 31 H 1.08999 * 109.47183 * 224.77046 * 1 2 3 32 32 H 1.09001 * 109.47524 * 181.10723 * 3 2 1 33 33 H 1.09001 * 109.47176 * 301.09853 * 3 2 1 34 34 H 1.09001 * 109.47455 * 61.10222 * 3 2 1 35 35 H 1.09004 * 109.47457 * 260.55122 * 4 2 1 36 36 H 1.08994 * 109.47363 * 20.55085 * 4 2 1 37 37 H 1.09005 * 109.47257 * 140.55133 * 4 2 1 38 38 H 0.96999 * 119.99966 * 359.97438 * 9 7 6 39 39 H 0.96992 * 120.00970 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.01059 * 0.25122 * 22 21 20 41 41 H 1.07993 * 119.96945 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.98589 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 3.1188 -0.3649 1.9849 7 6 4.0127 0.7804 1.7347 8 8 3.6566 1.9055 2.0290 9 7 5.2246 0.5807 1.1798 10 6 6.0553 1.6445 0.9479 11 1 5.7391 2.6435 1.2093 12 6 7.3052 1.4383 0.3761 13 7 7.6902 0.2228 0.0586 14 14 8.4381 2.8895 0.0591 15 1 8.7390 3.5722 1.3431 16 1 9.7022 2.4063 -0.5522 17 1 7.7738 3.8434 -0.8650 18 7 3.2338 -1.2460 2.9936 19 7 2.2859 -2.1140 2.9186 20 7 1.4960 -1.8114 1.8004 21 6 0.3637 -2.5135 1.3612 22 6 -0.1225 -2.3147 0.0762 23 6 -1.2369 -3.0071 -0.3547 24 6 -1.8699 -3.9003 0.4938 25 9 -2.9597 -4.5769 0.0698 26 6 -1.3876 -4.1004 1.7761 27 6 -0.2726 -3.4090 2.2115 28 17 0.3327 -3.6603 3.8191 29 1 -0.3634 0.9916 0.2699 30 1 -0.3634 -0.2620 -0.9937 31 1 -0.3633 -0.7296 0.7237 32 1 3.1297 1.4426 -0.0199 33 1 1.6606 1.9620 -0.8800 34 1 1.6928 1.9506 0.8997 35 1 2.3201 -1.7424 -0.9902 36 1 1.2539 -0.7406 -2.0040 37 1 2.9093 -0.1948 -1.6432 38 1 5.5087 -0.3167 0.9454 39 1 8.5624 0.0790 -0.3408 40 1 0.3734 -1.6221 -0.5878 41 1 -1.6152 -2.8520 -1.3543 42 1 -1.8828 -4.7970 2.4364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:10 Heat of formation + Delta-G solvation = 93.000383 kcal Electronic energy + Delta-G solvation = -31527.628506 eV Core-core repulsion = 27066.977614 eV Total energy + Delta-G solvation = -4460.650892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.100 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.40814 -42.64260 -39.95586 -38.26673 -37.42922 -36.56457 -34.28416 -33.97277 -31.82702 -31.35315 -30.35261 -29.44205 -27.56113 -27.38300 -25.38343 -24.22284 -23.66488 -22.73103 -22.01477 -20.22912 -19.10108 -18.46220 -18.10437 -17.60638 -16.92049 -16.34453 -16.07673 -15.70355 -15.56963 -15.10423 -14.98017 -14.76065 -14.35799 -14.16223 -14.01642 -13.94637 -13.54102 -13.41166 -13.09026 -12.85810 -12.61731 -12.46100 -12.26100 -11.70089 -11.65872 -11.64705 -11.42921 -11.30469 -11.12212 -11.10142 -10.86649 -10.82891 -10.63127 -10.49991 -10.43698 -10.30725 -9.53669 -9.29680 -9.02648 -8.69845 -8.40586 -8.07921 -6.52169 -3.92962 0.08914 0.46980 1.58314 1.66725 2.01372 2.58776 2.88475 3.12930 3.22063 3.25918 3.60581 3.67588 3.89616 4.02125 4.10290 4.27505 4.43295 4.51456 4.63434 4.72225 4.74424 4.87860 5.06778 5.14683 5.19522 5.28453 5.33755 5.36189 5.47743 5.50771 5.59998 5.69544 5.82453 5.83627 5.92234 6.02269 6.07741 6.14862 6.37794 6.40807 6.64984 6.84188 7.45342 7.92338 8.27878 8.46718 9.03972 9.39563 9.89576 10.64364 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002954 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.317415 B = 9476.392859 C =10287.353400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.005 4.005 3 C -0.145 4.145 4 C -0.158 4.158 5 C 0.091 3.909 6 C -0.036 4.036 7 C 0.518 3.482 8 O -0.579 6.579 9 N -0.534 5.534 10 C -0.304 4.304 11 H 0.108 0.892 12 C 0.029 3.971 13 N -0.890 5.890 14 Si 0.933 3.067 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.271 1.271 18 N -0.198 5.198 19 N -0.056 5.056 20 N -0.322 5.322 21 C 0.133 3.867 22 C -0.096 4.096 23 C -0.146 4.146 24 C 0.119 3.881 25 F -0.128 7.128 26 C -0.141 4.141 27 C -0.005 4.005 28 Cl -0.011 7.011 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.188 0.812 41 H 0.154 0.846 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 -8.760 -4.774 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 C -0.203 4.203 4 C -0.215 4.215 5 C -0.041 4.041 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.168 5.168 10 C -0.433 4.433 11 H 0.126 0.874 12 C -0.175 4.175 13 N -0.530 5.530 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.197 1.197 18 N -0.070 5.070 19 N -0.032 5.032 20 N -0.102 5.102 21 C 0.038 3.962 22 C -0.116 4.116 23 C -0.166 4.166 24 C 0.099 3.901 25 F -0.107 7.107 26 C -0.161 4.161 27 C -0.035 4.035 28 Cl 0.019 6.981 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.085 0.915 40 H 0.205 0.795 41 H 0.172 0.828 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.621 -9.059 -3.288 20.967 hybrid contribution 0.366 0.324 -0.814 0.950 sum -18.254 -8.736 -4.102 20.648 Atomic orbital electron populations 1.23203 0.93865 1.03804 1.02449 1.19452 0.95209 0.97209 0.88923 1.22380 1.04159 0.91013 1.02698 1.22328 1.03049 1.00783 0.95354 1.21866 0.95388 0.88933 0.97868 1.21777 0.99679 1.00582 0.95467 1.16083 0.82548 0.85669 0.85531 1.90663 1.75125 1.22630 1.57979 1.41789 1.12306 1.10784 1.51909 1.19707 0.95817 0.89509 1.38292 0.87404 1.25336 0.97736 0.97829 0.96570 1.69612 1.21712 1.20404 1.41274 0.85887 0.78764 0.80454 0.78985 1.19664 1.20890 1.19668 1.74765 1.13592 1.00711 1.17920 1.82342 1.00659 1.19180 1.01044 1.47334 1.20720 1.19960 1.22167 1.17294 0.88308 0.96837 0.93724 1.22227 0.97143 0.98186 0.94044 1.21027 0.96994 0.97338 1.01215 1.17502 0.85773 0.94016 0.92837 1.91550 1.51057 1.78071 1.89983 1.20849 0.96777 1.02607 0.95907 1.20410 0.95624 0.98201 0.89232 1.98459 1.86429 1.95152 1.18105 0.90936 0.90508 0.90808 0.89315 0.92119 0.90591 0.92117 0.90982 0.89816 0.77101 0.91481 0.79528 0.82794 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 7.38 37.15 0.27 -1.54 16 2 C -0.01 -0.07 0.75 -155.67 -0.12 -0.19 16 3 C -0.15 -2.32 6.22 37.16 0.23 -2.09 16 4 C -0.16 -1.80 7.91 37.15 0.29 -1.51 16 5 C 0.09 1.56 5.26 -81.72 -0.43 1.13 16 6 C -0.04 -0.77 6.74 -83.54 -0.56 -1.33 16 7 C 0.52 12.42 4.80 -12.52 -0.06 12.36 16 8 O -0.58 -15.18 14.18 5.25 0.07 -15.11 16 9 N -0.53 -13.40 5.27 -11.95 -0.06 -13.46 16 10 C -0.30 -8.07 9.68 -14.99 -0.15 -8.21 16 11 H 0.11 2.95 7.15 -52.48 -0.38 2.57 16 12 C 0.03 0.74 5.50 -17.46 -0.10 0.64 16 13 N -0.89 -23.45 13.05 55.50 0.72 -22.73 16 14 Si 0.93 20.12 29.55 -169.99 -5.02 15.10 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 N -0.20 -4.25 12.39 32.85 0.41 -3.85 16 19 N -0.06 -1.06 10.82 60.35 0.65 -0.40 16 20 N -0.32 -5.21 3.76 -6.66 -0.03 -5.23 16 21 C 0.13 1.69 5.60 -83.52 -0.47 1.22 16 22 C -0.10 -0.92 5.88 -39.42 -0.23 -1.15 16 23 C -0.15 -1.10 10.02 -39.53 -0.40 -1.50 16 24 C 0.12 1.00 7.30 -39.40 -0.29 0.71 16 25 F -0.13 -1.09 17.27 2.25 0.04 -1.05 16 26 C -0.14 -1.28 9.80 -39.50 -0.39 -1.67 16 27 C 0.00 -0.06 6.33 -39.33 -0.25 -0.31 16 28 Cl -0.01 -0.14 26.11 -51.86 -1.35 -1.50 16 29 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 30 H 0.08 0.53 6.20 -51.93 -0.32 0.21 16 31 H 0.07 0.80 3.61 -65.38 -0.24 0.57 16 32 H 0.09 1.74 5.23 -51.93 -0.27 1.47 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.36 7.13 -51.93 -0.37 0.99 16 35 H 0.06 0.72 7.35 -51.93 -0.38 0.33 16 36 H 0.07 0.56 6.80 -51.93 -0.35 0.21 16 37 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 38 H 0.40 9.90 7.88 -40.82 -0.32 9.58 16 39 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.19 1.67 1.36 -57.16 -0.08 1.59 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -30.58 353.52 -5.78 -36.36 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.91 Total: 9.97 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.63 Total: -3.42 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.70 Total: -45.68 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.58 -5.78 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.361 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds