Wall clock time and date at job start Tue Mar 31 2020 05:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.52994 * 109.47310 * 239.99770 * 2 1 3 5 5 C 1.50703 * 109.47293 * 119.99802 * 2 1 3 6 6 C 1.36706 * 126.61018 * 218.05308 * 5 2 1 7 7 C 1.47424 * 125.77688 * 0.03859 * 6 5 2 8 8 O 1.21627 * 119.99803 * 77.03052 * 7 6 5 9 9 N 1.34771 * 120.00080 * 257.03467 * 7 6 5 10 10 C 1.36952 * 120.00262 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99570 * 359.97438 * 10 9 7 12 12 C 1.38986 * 119.99883 * 179.97438 * 10 9 7 13 13 N 1.31401 * 120.00842 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99852 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46734 * 59.99910 * 14 12 10 16 16 H 1.48500 * 109.47347 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47180 * 299.99827 * 14 12 10 18 18 N 1.34432 * 108.44866 * 180.02562 * 6 5 2 19 19 N 1.28750 * 109.58000 * 359.73532 * 18 6 5 20 20 N 1.35076 * 126.60769 * 38.06735 * 5 2 1 21 21 C 1.40289 * 126.60982 * 359.96945 * 20 5 2 22 22 C 1.38821 * 120.04801 * 16.31078 * 21 20 5 23 23 C 1.38092 * 119.97613 * 179.97438 * 22 21 20 24 24 C 1.38515 * 120.06306 * 359.97392 * 23 22 21 25 25 F 1.35102 * 119.95555 * 180.02562 * 24 23 22 26 26 C 1.38451 * 120.09244 * 0.04521 * 24 23 22 27 27 C 1.38233 * 120.02640 * 359.97438 * 26 24 23 28 28 Cl 1.73601 * 120.03435 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.47266 * 344.77243 * 1 2 3 30 30 H 1.09005 * 109.47393 * 104.77112 * 1 2 3 31 31 H 1.08999 * 109.47183 * 224.77046 * 1 2 3 32 32 H 1.09001 * 109.47524 * 181.10723 * 3 2 1 33 33 H 1.09001 * 109.47176 * 301.09853 * 3 2 1 34 34 H 1.09001 * 109.47455 * 61.10222 * 3 2 1 35 35 H 1.09004 * 109.47457 * 260.55122 * 4 2 1 36 36 H 1.08994 * 109.47363 * 20.55085 * 4 2 1 37 37 H 1.09005 * 109.47257 * 140.55133 * 4 2 1 38 38 H 0.96999 * 119.99966 * 359.97438 * 9 7 6 39 39 H 0.96992 * 120.00970 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.01059 * 0.25122 * 22 21 20 41 41 H 1.07993 * 119.96945 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.98589 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 3.1188 -0.3649 1.9849 7 6 4.0127 0.7804 1.7347 8 8 3.6566 1.9055 2.0290 9 7 5.2246 0.5807 1.1798 10 6 6.0553 1.6445 0.9479 11 1 5.7391 2.6435 1.2093 12 6 7.3052 1.4383 0.3761 13 7 7.6902 0.2228 0.0586 14 14 8.4381 2.8895 0.0591 15 1 8.7390 3.5722 1.3431 16 1 9.7022 2.4063 -0.5522 17 1 7.7738 3.8434 -0.8650 18 7 3.2338 -1.2460 2.9936 19 7 2.2859 -2.1140 2.9186 20 7 1.4960 -1.8114 1.8004 21 6 0.3637 -2.5135 1.3612 22 6 -0.1225 -2.3147 0.0762 23 6 -1.2369 -3.0071 -0.3547 24 6 -1.8699 -3.9003 0.4938 25 9 -2.9597 -4.5769 0.0698 26 6 -1.3876 -4.1004 1.7761 27 6 -0.2726 -3.4090 2.2115 28 17 0.3327 -3.6603 3.8191 29 1 -0.3634 0.9916 0.2699 30 1 -0.3634 -0.2620 -0.9937 31 1 -0.3633 -0.7296 0.7237 32 1 3.1297 1.4426 -0.0199 33 1 1.6606 1.9620 -0.8800 34 1 1.6928 1.9506 0.8997 35 1 2.3201 -1.7424 -0.9902 36 1 1.2539 -0.7406 -2.0040 37 1 2.9093 -0.1948 -1.6432 38 1 5.5087 -0.3167 0.9454 39 1 8.5624 0.0790 -0.3408 40 1 0.3734 -1.6221 -0.5878 41 1 -1.6152 -2.8520 -1.3543 42 1 -1.8828 -4.7970 2.4364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095401843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:09 Heat of formation + Delta-G solvation = 73.189087 kcal Electronic energy + Delta-G solvation = -31528.487588 eV Core-core repulsion = 27066.977614 eV Total energy + Delta-G solvation = -4461.509974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.100 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.09169 -43.94181 -40.94279 -40.05628 -38.53533 -37.51793 -36.05638 -35.37135 -33.33096 -32.66856 -31.61777 -30.60358 -28.58835 -28.33986 -27.24849 -25.34343 -24.77025 -23.90821 -23.27619 -21.56905 -20.50012 -19.99918 -19.38088 -18.79819 -17.87705 -17.70516 -17.09537 -16.76369 -16.68971 -16.50886 -16.06688 -15.85953 -15.85049 -15.54552 -15.14753 -14.99308 -14.79555 -14.64877 -14.46545 -13.80694 -13.79735 -13.54941 -13.48678 -13.36993 -12.92738 -12.69935 -12.65621 -12.45397 -12.45212 -12.41364 -12.28486 -12.11710 -11.93894 -11.92211 -11.74106 -11.62509 -11.37212 -10.72847 -10.23188 -10.07863 -10.04828 -9.51176 -8.49728 -5.99456 -0.87333 -0.25223 0.43139 0.67207 0.93883 1.01622 1.38822 1.44711 1.55914 1.83059 2.09939 2.28299 2.83327 2.87083 2.96605 3.12409 3.16832 3.43767 3.52688 3.73226 3.78212 3.83814 3.91473 4.01504 4.09315 4.18340 4.36643 4.44148 4.57191 4.59181 4.65697 4.72084 4.74307 4.90621 4.92657 4.95232 4.96010 5.10022 5.30252 5.33211 5.39045 5.49233 5.55241 5.91827 6.48149 6.82598 7.03280 7.41724 7.94497 8.67219 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002954 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.317415 B = 9476.392859 C =10287.353400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.139 4.139 4 C -0.156 4.156 5 C 0.110 3.890 6 C -0.079 4.079 7 C 0.532 3.468 8 O -0.610 6.610 9 N -0.542 5.542 10 C -0.333 4.333 11 H 0.091 0.909 12 C -0.007 4.007 13 N -0.915 5.915 14 Si 0.997 3.003 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.262 1.262 18 N -0.236 5.236 19 N -0.067 5.067 20 N -0.305 5.305 21 C 0.090 3.910 22 C -0.084 4.084 23 C -0.124 4.124 24 C 0.132 3.868 25 F -0.123 7.123 26 C -0.138 4.138 27 C -0.014 4.014 28 Cl -0.034 7.034 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.392 0.608 39 H 0.280 0.720 40 H 0.198 0.802 41 H 0.198 0.802 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 -9.617 -7.976 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 C -0.197 4.197 4 C -0.213 4.213 5 C -0.023 4.023 6 C -0.219 4.219 7 C 0.317 3.683 8 O -0.496 6.496 9 N -0.175 5.175 10 C -0.462 4.462 11 H 0.109 0.891 12 C -0.208 4.208 13 N -0.554 5.554 14 Si 0.820 3.180 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.187 1.187 18 N -0.107 5.107 19 N -0.043 5.043 20 N -0.085 5.085 21 C -0.003 4.003 22 C -0.103 4.103 23 C -0.143 4.143 24 C 0.112 3.888 25 F -0.101 7.101 26 C -0.157 4.157 27 C -0.044 4.044 28 Cl -0.005 7.005 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.225 0.775 39 H 0.090 0.910 40 H 0.214 0.786 41 H 0.215 0.785 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.632 -9.966 -6.480 24.684 hybrid contribution 1.036 0.453 0.128 1.138 sum -20.596 -9.513 -6.352 23.560 Atomic orbital electron populations 1.23257 0.90465 1.04132 1.05205 1.19694 0.97858 0.95136 0.88109 1.22230 1.01397 0.93197 1.02874 1.22379 1.04137 0.99675 0.95137 1.22317 0.93554 0.88459 0.98016 1.21422 1.01520 1.01207 0.97730 1.16356 0.82188 0.86143 0.83636 1.90614 1.75754 1.24415 1.58836 1.41797 1.12819 1.10252 1.52663 1.19736 0.97076 0.89313 1.40075 0.89088 1.26156 0.98442 1.00528 0.95633 1.69691 1.22270 1.21989 1.41497 0.84933 0.76993 0.77310 0.78803 1.19839 1.19651 1.18676 1.74691 1.15288 1.01715 1.19053 1.82213 1.00769 1.18817 1.02534 1.47413 1.20883 1.19409 1.20758 1.17797 0.88221 0.98544 0.95718 1.22366 0.97402 0.98113 0.92467 1.21435 0.95133 0.95166 1.02570 1.17582 0.85369 0.93478 0.92385 1.91582 1.50771 1.77935 1.89801 1.21019 0.95729 1.02196 0.96795 1.20545 0.96615 0.98868 0.88341 1.98454 1.86871 1.95283 1.19868 0.90786 0.85637 0.91179 0.93595 0.88745 0.93336 0.92561 0.85752 0.91731 0.77461 0.91011 0.78564 0.78453 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 7.38 71.98 0.53 -2.34 16 2 C -0.01 -0.14 0.75 -52.93 -0.04 -0.18 16 3 C -0.14 -4.50 6.22 71.98 0.45 -4.05 16 4 C -0.16 -3.13 7.91 71.98 0.57 -2.56 16 5 C 0.11 3.84 5.26 41.70 0.22 4.06 16 6 C -0.08 -3.54 6.74 40.81 0.27 -3.26 16 7 C 0.53 27.30 4.80 86.66 0.42 27.72 16 8 O -0.61 -34.24 14.18 -4.12 -0.06 -34.30 16 9 N -0.54 -29.02 5.27 -309.98 -1.63 -30.66 16 10 C -0.33 -18.63 9.68 84.07 0.81 -17.81 16 11 H 0.09 5.29 7.15 -2.91 -0.02 5.27 16 12 C -0.01 -0.34 5.50 84.94 0.47 0.12 16 13 N -0.91 -49.35 13.05 21.67 0.28 -49.06 16 14 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 18 N -0.24 -10.84 12.39 -49.99 -0.62 -11.46 16 19 N -0.07 -2.65 10.82 37.02 0.40 -2.25 16 20 N -0.30 -9.89 3.76 -174.99 -0.66 -10.55 16 21 C 0.09 2.12 5.60 38.09 0.21 2.33 16 22 C -0.08 -1.24 5.88 22.37 0.13 -1.11 16 23 C -0.12 -1.11 10.02 22.30 0.22 -0.89 16 24 C 0.13 1.58 7.30 22.39 0.16 1.74 16 25 F -0.12 -1.46 17.27 44.97 0.78 -0.69 16 26 C -0.14 -2.07 9.80 22.32 0.22 -1.85 16 27 C -0.01 -0.31 6.33 22.43 0.14 -0.17 16 28 Cl -0.03 -0.90 26.11 -2.72 -0.07 -0.97 16 29 H 0.07 1.25 7.66 -2.39 -0.02 1.24 16 30 H 0.13 0.85 6.20 -2.38 -0.01 0.84 16 31 H 0.07 1.27 3.61 -15.02 -0.05 1.22 16 32 H 0.05 1.89 5.23 -2.39 -0.01 1.88 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.80 7.13 -2.39 -0.02 1.78 16 35 H 0.06 1.20 7.35 -2.38 -0.02 1.18 16 36 H 0.12 1.17 6.80 -2.39 -0.02 1.15 16 37 H 0.06 1.58 7.69 -2.38 -0.02 1.56 16 38 H 0.39 21.03 7.88 -92.71 -0.73 20.30 16 39 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.20 2.49 1.36 -7.30 -0.01 2.48 16 41 H 0.20 0.18 8.06 -2.91 -0.02 0.15 16 42 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.04 353.52 5.59 -68.45 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.35 Total: 25.93 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.79 Total: 1.74 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -2.23 Total: -103.97 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.06 Total: -34.30 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.78 Total: -0.69 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -74.04 5.59 -68.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.636 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds