Wall clock time and date at job start Tue Mar 31 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30045 * 126.18120 * 2 1 4 4 O 1.21283 * 110.51579 * 179.67574 * 3 2 1 5 5 C 1.34251 * 109.68601 * 0.46705 * 4 3 2 6 6 C 1.47528 * 126.68622 * 179.80769 * 5 4 3 7 7 C 1.39883 * 120.59810 * 179.66753 * 6 5 4 8 8 C 1.38419 * 118.36599 * 179.77116 * 7 6 5 9 9 C 1.38304 * 119.49527 * 0.49376 * 8 7 6 10 10 N 1.31895 * 121.20225 * 359.48631 * 9 8 7 11 11 C 1.32373 * 121.77669 * 0.26489 * 10 9 8 12 12 N 1.38466 * 119.82153 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99649 * 359.97438 * 12 11 10 14 14 C 1.53000 * 109.47086 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47190 * 64.99669 * 14 13 12 16 16 C 1.35675 * 117.00133 * 179.97438 * 15 14 13 17 17 C 1.39315 * 119.81793 * 359.73353 * 16 15 14 18 18 C 1.36437 * 120.18438 * 179.75871 * 17 16 15 19 19 C 1.40833 * 119.81256 * 0.50976 * 18 17 16 20 20 C 1.41214 * 120.18225 * 179.72131 * 19 18 17 21 21 H 1.07991 * 120.00013 * 204.56125 * 20 19 18 22 22 C 1.39892 * 119.99455 * 24.56223 * 20 19 18 23 23 N 1.30879 * 120.00612 * 17.93585 * 22 20 19 24 24 Si 1.86801 * 119.99591 * 197.93377 * 22 20 19 25 25 H 1.48503 * 109.47292 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47209 * 120.00289 * 24 22 20 27 27 H 1.48500 * 109.47337 * 239.99874 * 24 22 20 28 28 C 1.40832 * 119.64060 * 359.74389 * 19 18 17 29 29 C 1.36443 * 119.81203 * 359.97438 * 28 19 18 30 30 N 1.32250 * 106.61831 * 359.54350 * 5 4 3 31 31 H 1.09004 * 109.46587 * 270.04403 * 1 2 3 32 32 H 1.08998 * 109.46928 * 30.03236 * 1 2 3 33 33 H 1.08994 * 109.47411 * 150.04301 * 1 2 3 34 34 H 1.08000 * 120.81613 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.24844 * 180.24293 * 8 7 6 36 36 H 1.07997 * 119.39491 * 179.77527 * 9 8 7 37 37 H 0.96999 * 120.00473 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47365 * 299.99767 * 13 12 11 39 39 H 1.09002 * 109.47309 * 60.00619 * 13 12 11 40 40 H 1.08995 * 109.47378 * 185.00435 * 14 13 12 41 41 H 1.09007 * 109.46986 * 305.00031 * 14 13 12 42 42 H 1.07996 * 119.90685 * 0.02562 * 17 16 15 43 43 H 1.07999 * 120.09365 * 180.25964 * 18 17 16 44 44 H 0.96999 * 120.00571 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.09723 * 179.97438 * 28 19 18 46 46 H 1.08002 * 119.90846 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2747 1.0497 0.0000 4 8 3.4425 0.7222 0.0064 5 6 3.5367 -0.6170 0.0010 6 6 4.7786 -1.4132 0.0019 7 6 4.7282 -2.8112 0.0027 8 6 5.9217 -3.5123 -0.0014 9 6 7.1185 -2.8193 0.0042 10 7 7.1446 -1.5006 0.0033 11 6 6.0333 -0.7814 0.0022 12 7 6.1078 0.6013 0.0008 13 6 7.4142 1.2643 0.0010 14 6 7.2161 2.7814 -0.0002 15 8 6.5891 3.1809 1.2202 16 6 6.3409 4.5051 1.3805 17 6 6.7017 5.4037 0.3789 18 6 6.4511 6.7363 0.5302 19 6 5.8356 7.2039 1.7074 20 6 5.5780 8.5822 1.8747 21 1 5.4889 8.9983 2.8672 22 6 5.4381 9.4084 0.7545 23 7 5.1944 8.8838 -0.4195 24 14 5.5991 11.2608 0.9345 25 1 5.8724 11.5983 2.3546 26 1 6.7173 11.7452 0.0859 27 1 4.3348 11.9115 0.5061 28 6 5.4789 6.2894 2.7173 29 6 5.7312 4.9592 2.5479 30 7 2.2991 -1.0832 0.0006 31 1 -0.3632 0.0008 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3634 -0.8903 -0.5131 34 1 3.7813 -3.3306 0.0032 35 1 5.9182 -4.5923 -0.0048 36 1 8.0488 -3.3679 0.0047 37 1 5.2952 1.1308 -0.0004 38 1 7.9701 0.9716 0.8917 39 1 7.9714 0.9697 -0.8883 40 1 8.1842 3.2742 -0.0897 41 1 6.5850 3.0648 -0.8426 42 1 7.1771 5.0440 -0.5215 43 1 6.7276 7.4312 -0.2490 44 1 5.0978 9.4567 -1.1962 45 1 5.0069 6.6399 3.6233 46 1 5.4587 4.2566 3.3215 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095403239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:25 Heat of formation + Delta-G solvation = 75.839789 kcal Electronic energy + Delta-G solvation = -31446.295598 eV Core-core repulsion = 27110.793721 eV Total energy + Delta-G solvation = -4335.501876 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -46.64583 -41.35862 -40.56273 -38.44993 -37.34243 -36.80958 -35.26723 -35.08184 -32.82489 -32.18211 -31.55978 -30.92041 -30.14425 -29.27877 -26.72652 -26.16175 -24.82688 -24.28676 -23.26494 -22.88118 -22.60853 -21.83835 -19.31253 -19.30421 -19.02517 -18.90880 -18.72661 -17.75760 -17.33043 -17.12977 -16.49671 -16.26198 -15.89012 -15.82894 -15.65620 -14.99889 -14.93815 -14.84302 -14.54842 -14.38282 -14.34075 -14.11109 -13.85698 -13.80251 -13.71880 -13.32491 -13.24087 -13.15462 -12.82077 -12.77622 -12.73395 -12.53302 -12.29097 -12.16827 -11.71611 -11.68927 -11.63282 -11.38851 -11.21149 -10.89776 -10.57819 -10.48103 -9.59386 -8.94064 -8.80627 -8.62340 -6.24870 -0.66759 0.43175 0.53082 0.91124 1.01760 1.23225 1.37912 1.48427 1.49239 1.53372 2.05387 2.21224 2.46629 2.53971 2.70030 2.83816 2.99117 3.45985 3.66210 3.67879 3.85544 3.95314 4.06738 4.12593 4.22676 4.27525 4.35919 4.40836 4.44537 4.53192 4.55007 4.57491 4.66897 4.78264 4.78872 4.89735 4.96836 4.99157 5.04928 5.13023 5.23835 5.34699 5.48959 5.52656 5.63367 5.94609 5.97111 6.03818 6.12777 6.21009 6.53213 6.75862 6.93013 6.95076 7.06814 7.11942 8.34687 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.002201 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.446546 B =12718.415628 C =14415.673421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.174 3.826 3 N -0.415 5.415 4 O 0.044 5.956 5 C 0.243 3.757 6 C -0.190 4.190 7 C 0.026 3.974 8 C -0.227 4.227 9 C 0.186 3.814 10 N -0.556 5.556 11 C 0.432 3.568 12 N -0.713 5.713 13 C 0.144 3.856 14 C 0.044 3.956 15 O -0.332 6.332 16 C 0.002 3.998 17 C -0.174 4.174 18 C -0.155 4.155 19 C 0.055 3.945 20 C -0.498 4.498 21 H 0.075 0.925 22 C 0.033 3.967 23 N -0.831 5.831 24 Si 0.982 3.018 25 H -0.258 1.258 26 H -0.263 1.263 27 H -0.267 1.267 28 C -0.206 4.206 29 C -0.122 4.122 30 N -0.493 5.493 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.107 0.893 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -25.108 -3.579 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 N -0.131 5.131 4 O -0.007 6.007 5 C 0.027 3.973 6 C -0.201 4.201 7 C -0.001 4.001 8 C -0.250 4.250 9 C 0.026 3.974 10 N -0.275 5.275 11 C 0.192 3.808 12 N -0.347 5.347 13 C 0.021 3.979 14 C -0.032 4.032 15 O -0.248 6.248 16 C -0.042 4.042 17 C -0.193 4.193 18 C -0.175 4.175 19 C 0.053 3.947 20 C -0.528 4.528 21 H 0.093 0.907 22 C -0.181 4.181 23 N -0.458 5.458 24 Si 0.803 3.197 25 H -0.182 1.182 26 H -0.188 1.188 27 H -0.192 1.192 28 C -0.226 4.226 29 C -0.141 4.141 30 N -0.228 5.228 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.175 0.825 35 H 0.199 0.801 36 H 0.220 0.780 37 H 0.248 0.752 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.489 -24.081 -3.691 24.367 hybrid contribution -1.066 1.202 -0.176 1.616 sum -0.577 -22.879 -3.867 23.211 Atomic orbital electron populations 1.20397 0.79881 1.05993 1.05727 1.26666 1.02232 0.82858 0.98193 1.74712 0.89241 1.24941 1.24229 1.85172 1.22901 1.24972 1.67625 1.26586 0.95152 0.81309 0.94247 1.17687 0.85036 0.93842 1.23548 1.21684 1.01409 0.89337 0.87645 1.22207 0.91047 1.03403 1.08298 1.23523 1.00456 0.87586 0.85807 1.67464 1.27419 1.09999 1.22590 1.18484 0.88542 0.85499 0.88239 1.45102 1.10235 1.02349 1.76969 1.21451 0.84411 0.87809 1.04219 1.23066 0.98676 0.95252 0.86162 1.85838 1.77719 1.21629 1.39649 1.18620 1.06929 0.82037 0.96589 1.20824 1.05582 0.94130 0.98756 1.20930 1.02365 0.94434 0.99732 1.17957 0.90682 0.93964 0.92127 1.19730 1.45482 0.93317 0.94273 0.90677 1.26744 0.91192 1.06153 0.94007 1.69897 1.34816 1.39828 1.01281 0.85158 0.78894 0.75886 0.79742 1.18191 1.18799 1.19233 1.20774 1.08070 0.92394 1.01365 1.19853 1.02643 0.95332 0.96247 1.72099 0.98679 1.28776 1.23249 0.87745 0.88736 0.86970 0.82490 0.80125 0.78046 0.75237 0.90294 0.87281 0.89491 0.92650 0.86137 0.87424 0.90255 0.87478 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.51 71.24 0.75 -0.30 16 2 C 0.17 4.73 8.20 138.53 1.14 5.86 16 3 N -0.41 -13.88 12.15 -58.45 -0.71 -14.59 16 4 O 0.04 1.44 8.43 69.17 0.58 2.02 16 5 C 0.24 6.84 7.96 87.20 0.69 7.54 16 6 C -0.19 -4.43 5.91 -19.88 -0.12 -4.55 16 7 C 0.03 0.42 9.83 22.71 0.22 0.64 16 8 C -0.23 -2.26 10.09 22.33 0.23 -2.03 16 9 C 0.19 2.22 11.16 84.70 0.95 3.16 16 10 N -0.56 -11.16 9.55 -192.46 -1.84 -13.00 16 11 C 0.43 10.49 7.49 133.58 1.00 11.49 16 12 N -0.71 -19.39 5.57 -344.37 -1.92 -21.31 16 13 C 0.14 3.51 6.07 86.38 0.52 4.04 16 14 C 0.04 1.32 4.86 71.98 0.35 1.67 16 15 O -0.33 -13.11 10.07 -89.93 -0.91 -14.01 16 16 C 0.00 0.09 6.71 22.79 0.15 0.25 16 17 C -0.17 -8.24 8.96 22.11 0.20 -8.04 16 18 C -0.16 -8.35 8.64 22.48 0.19 -8.15 16 19 C 0.05 3.06 5.57 -21.28 -0.12 2.94 16 20 C -0.50 -27.58 9.04 23.40 0.21 -27.37 16 21 H 0.08 4.02 7.91 -2.92 -0.02 3.99 16 22 C 0.03 1.69 5.13 85.24 0.44 2.13 16 23 N -0.83 -44.48 10.96 21.82 0.24 -44.24 16 24 Si 0.98 39.05 29.60 68.60 2.03 41.08 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 28 C -0.21 -10.64 9.74 22.49 0.22 -10.42 16 29 C -0.12 -5.85 9.92 22.11 0.22 -5.63 16 30 N -0.49 -13.31 11.33 -302.64 -3.43 -16.74 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.16 2.08 7.95 -2.91 -0.02 2.06 16 35 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.41 12.65 5.16 -92.71 -0.48 12.17 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 2.35 7.63 -2.39 -0.02 2.33 16 41 H 0.06 1.70 7.66 -2.38 -0.02 1.68 16 42 H 0.12 4.91 6.27 -2.91 -0.02 4.90 16 43 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 44 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 45 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 46 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -72.00 394.77 1.86 -70.14 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.56 Total: 37.45 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 7.25 Total: -26.79 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -7.66 Total: -109.89 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.32 Total: -11.99 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -72.00 1.86 -70.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095403239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.978 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds