Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47907 * 111.00417 * 2 1 4 4 C 1.54598 * 102.61169 * 265.51447 * 3 2 1 5 5 C 1.51564 * 102.77080 * 334.28498 * 4 3 2 6 6 C 1.38888 * 107.98473 * 16.22542 * 5 4 3 7 7 C 1.39427 * 119.12794 * 180.54139 * 6 5 4 8 8 C 1.37992 * 120.34638 * 359.48110 * 7 6 5 9 9 C 1.38144 * 120.34094 * 359.95464 * 8 7 6 10 10 C 1.38495 * 131.57688 * 195.73402 * 5 4 3 11 11 N 1.39943 * 120.02960 * 359.97246 * 10 5 4 12 12 C 1.34779 * 119.99768 * 145.07557 * 11 10 5 13 13 O 1.21585 * 120.00256 * 4.14939 * 12 11 10 14 14 N 1.34775 * 119.99550 * 184.15462 * 12 11 10 15 15 C 1.46497 * 120.00221 * 359.97438 * 14 12 11 16 16 C 1.50696 * 109.47070 * 90.00496 * 15 14 12 17 17 H 1.07995 * 119.99964 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00114 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47699 * 59.99756 * 20 18 16 22 22 H 1.48499 * 109.47163 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46940 * 299.99476 * 20 18 16 24 24 C 1.46502 * 119.99588 * 179.97438 * 14 12 11 25 25 C 1.50706 * 109.47165 * 90.00107 * 24 14 12 26 26 C 1.38679 * 120.41076 * 269.71764 * 25 24 14 27 27 C 1.38631 * 118.41512 * 179.77958 * 26 25 24 28 28 C 1.38227 * 119.16078 * 0.52066 * 27 26 25 29 29 N 1.31858 * 120.76605 * 359.71932 * 28 27 26 30 30 C 1.31889 * 121.72127 * 0.02562 * 29 28 27 31 31 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47354 * 299.96322 * 1 2 3 33 33 H 1.09003 * 109.46596 * 59.95965 * 1 2 3 34 34 H 1.09008 * 110.78085 * 23.78995 * 3 2 1 35 35 H 1.09001 * 110.78656 * 147.04078 * 3 2 1 36 36 H 1.09003 * 110.74650 * 92.83601 * 4 3 2 37 37 H 1.09004 * 110.73870 * 215.98933 * 4 3 2 38 38 H 1.08003 * 119.82505 * 179.49557 * 7 6 5 39 39 H 1.08003 * 119.82640 * 179.97438 * 8 7 6 40 40 H 1.08000 * 120.09188 * 180.19337 * 9 8 7 41 41 H 0.96997 * 119.99862 * 324.78972 * 11 10 5 42 42 H 1.09010 * 109.47236 * 210.00484 * 15 14 12 43 43 H 1.08997 * 109.47132 * 329.99995 * 15 14 12 44 44 H 0.96996 * 120.00016 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47212 * 209.99409 * 24 14 12 46 46 H 1.08999 * 109.47273 * 329.99557 * 24 14 12 47 47 H 1.08000 * 120.79667 * 0.02562 * 26 25 24 48 48 H 1.07995 * 120.41835 * 180.21710 * 27 26 25 49 49 H 1.08004 * 119.61726 * 179.74190 * 28 27 26 50 50 H 1.08003 * 119.61068 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2303 1.6536 -1.5041 5 6 2.4327 0.2622 -2.0697 6 6 1.9709 -0.6531 -1.1327 7 6 2.0582 -2.0157 -1.4146 8 6 2.5868 -2.4470 -2.6141 9 6 3.0342 -1.5330 -3.5484 10 6 2.9544 -0.1723 -3.2769 11 7 3.4063 0.7577 -4.2198 12 6 4.4719 0.4698 -4.9932 13 8 4.9942 -0.6260 -4.9251 14 7 4.9586 1.3968 -5.8419 15 6 4.3290 2.7170 -5.9243 16 6 4.9809 3.6470 -4.9338 17 1 5.7835 3.2902 -4.3055 18 6 4.5519 4.9532 -4.8290 19 7 3.5741 5.3875 -5.5937 20 14 5.3604 6.1061 -3.6016 21 1 6.8068 6.2277 -3.9152 22 1 4.7214 7.4441 -3.6841 23 1 5.1953 5.5631 -2.2294 24 6 6.1172 1.0840 -6.6821 25 6 5.6469 0.4995 -7.9891 26 6 5.4807 -0.8705 -8.1261 27 6 5.0416 -1.3632 -9.3452 28 6 4.7964 -0.4798 -10.3797 29 7 4.9702 0.8168 -10.2150 30 6 5.3817 1.3211 -9.0679 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5133 0.8903 33 1 -0.3632 0.5145 -0.8897 34 1 1.2672 2.0761 0.4111 35 1 2.9360 1.4354 0.5544 36 1 1.3573 2.1318 -1.9484 37 1 3.1209 2.2642 -1.6532 38 1 1.7100 -2.7375 -0.6906 39 1 2.6508 -3.5046 -2.8237 40 1 3.4443 -1.8749 -4.4872 41 1 2.9500 1.6079 -4.3197 42 1 4.4510 3.1155 -6.9315 43 1 3.2672 2.6281 -5.6949 44 1 3.2725 6.3065 -5.5203 45 1 6.6831 1.9955 -6.8746 46 1 6.7537 0.3627 -6.1696 47 1 5.6845 -1.5374 -7.3014 48 1 4.8978 -2.4242 -9.4864 49 1 4.4582 -0.8560 -11.3340 50 1 5.5122 2.3888 -8.9705 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095413331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = 61.108299 kcal Electronic energy + Delta-G solvation = -33329.131878 eV Core-core repulsion = 29128.824291 eV Total energy + Delta-G solvation = -4200.307587 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86801 -40.10291 -39.37501 -36.84394 -35.29304 -34.36634 -33.03232 -32.19433 -31.65005 -31.16776 -29.19450 -28.33280 -27.65114 -25.84412 -25.80058 -23.48896 -23.09928 -22.79221 -22.03986 -21.31943 -20.64339 -19.07254 -17.81371 -17.00091 -16.84881 -16.50654 -16.05275 -15.88423 -15.77128 -15.27599 -15.17752 -14.98847 -14.63231 -14.55886 -14.11648 -13.67117 -13.63417 -13.28387 -13.16713 -13.00696 -12.89494 -12.75552 -12.54275 -12.36025 -12.13686 -11.98179 -11.84855 -11.75310 -11.39634 -11.22934 -11.13559 -11.08322 -10.99790 -10.80489 -10.34611 -10.05639 -9.91696 -9.64342 -9.50448 -9.25296 -9.11578 -8.81207 -8.68052 -8.05805 -7.83965 -7.55485 -6.30259 -4.39388 1.27790 1.51120 1.54212 1.59952 3.16273 3.20958 3.22468 3.27618 3.59620 3.73967 4.02741 4.09122 4.22071 4.58627 4.66248 4.75321 4.91084 5.02231 5.02576 5.05009 5.14978 5.15784 5.23919 5.29236 5.30953 5.38574 5.52095 5.59559 5.64083 5.68394 5.70407 5.80385 5.83524 5.87732 6.02244 6.10213 6.13998 6.17511 6.34317 6.48608 6.49626 6.55009 6.62696 6.64550 6.75148 6.91212 6.92318 6.96075 7.13966 7.25405 7.46429 7.61656 7.64345 7.89685 8.17528 8.41368 8.70904 9.10738 9.30347 10.75750 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.007060 B = 0.003957 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.959691 B = 7074.064858 C =10344.160720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.496 5.496 3 C 0.051 3.949 4 C -0.107 4.107 5 C -0.168 4.168 6 C 0.099 3.901 7 C -0.136 4.136 8 C -0.091 4.091 9 C -0.134 4.134 10 C 0.212 3.788 11 N -0.680 5.680 12 C 0.711 3.289 13 O -0.602 6.602 14 N -0.604 5.604 15 C 0.241 3.759 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.179 3.821 25 C -0.147 4.147 26 C -0.054 4.054 27 C -0.182 4.182 28 C 0.090 3.910 29 N -0.490 5.490 30 C 0.115 3.885 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.417 0.583 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.267 0.733 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.139 0.861 48 H 0.129 0.871 49 H 0.149 0.851 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -10.995 2.893 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.213 5.213 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.174 4.174 6 C 0.003 3.997 7 C -0.157 4.157 8 C -0.111 4.111 9 C -0.155 4.155 10 C 0.115 3.885 11 N -0.328 5.328 12 C 0.414 3.586 13 O -0.483 6.483 14 N -0.337 5.337 15 C 0.121 3.879 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.054 3.946 25 C -0.150 4.150 26 C -0.080 4.080 27 C -0.202 4.202 28 C -0.068 4.068 29 N -0.198 5.198 30 C -0.043 4.043 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.256 0.744 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.156 0.844 48 H 0.147 0.853 49 H 0.167 0.833 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.368 -11.162 2.640 11.954 hybrid contribution 0.042 1.141 0.627 1.303 sum -3.326 -10.020 3.267 11.052 Atomic orbital electron populations 1.22454 0.85877 1.02501 1.01015 1.60264 1.08244 1.15018 1.37786 1.23144 1.01150 0.87555 0.95722 1.21590 1.03394 0.94195 0.95337 1.20666 1.07441 0.96199 0.93077 1.19247 0.98392 0.93184 0.88849 1.20320 1.04647 0.92662 0.98039 1.20758 0.97954 0.99290 0.93073 1.21289 1.01694 0.90922 1.01548 1.16954 0.95452 0.89139 0.87004 1.42842 1.31478 1.20786 1.37700 1.15768 0.79800 0.84041 0.79005 1.90784 1.62622 1.22585 1.72260 1.47399 1.32218 1.14834 1.39258 1.19367 0.92687 0.77251 0.98631 1.21446 1.19904 0.95424 1.21327 0.91958 1.24937 0.94817 0.97940 0.95892 1.69908 1.26872 1.17336 1.38499 0.86572 0.79778 0.79741 0.81515 1.20023 1.21124 1.20079 1.20028 0.87530 1.00887 0.86148 1.21474 1.01268 0.94494 0.97806 1.21676 0.93977 0.95295 0.97101 1.22108 1.02410 1.01094 0.94586 1.22696 0.96333 0.89022 0.98703 1.67708 1.12321 1.14771 1.25027 1.22809 0.93319 1.00481 0.87648 0.91139 0.90991 0.94810 0.89908 0.89315 0.90336 0.89029 0.86373 0.85704 0.83901 0.74407 0.94092 0.95454 0.92306 0.88918 0.89608 0.84365 0.85288 0.83335 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.29 60.06 0.56 0.85 16 2 N -0.50 -6.50 5.33 -176.86 -0.94 -7.45 16 3 C 0.05 0.64 7.00 -2.43 -0.02 0.62 16 4 C -0.11 -1.57 6.93 -26.62 -0.18 -1.76 16 5 C -0.17 -2.74 6.16 -103.86 -0.64 -3.38 16 6 C 0.10 1.48 5.59 -83.42 -0.47 1.01 16 7 C -0.14 -1.86 10.07 -39.23 -0.39 -2.26 16 8 C -0.09 -1.27 10.01 -39.71 -0.40 -1.67 16 9 C -0.13 -2.22 8.70 -39.34 -0.34 -2.56 16 10 C 0.21 3.74 6.29 -83.78 -0.53 3.21 16 11 N -0.68 -12.88 5.18 -14.29 -0.07 -12.95 16 12 C 0.71 14.28 8.12 -86.92 -0.71 13.58 16 13 O -0.60 -12.49 12.99 5.29 0.07 -12.42 16 14 N -0.60 -11.86 2.44 -182.18 -0.44 -12.31 16 15 C 0.24 5.30 4.96 -5.20 -0.03 5.28 16 16 C -0.54 -13.15 9.39 -34.44 -0.32 -13.47 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -23.15 13.29 55.43 0.74 -22.41 16 20 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.18 3.05 5.56 -5.19 -0.03 3.02 16 25 C -0.15 -2.35 5.48 -104.48 -0.57 -2.93 16 26 C -0.05 -0.80 9.86 -39.27 -0.39 -1.19 16 27 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 28 C 0.09 1.21 11.18 -17.54 -0.20 1.02 16 29 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 16 30 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.85 7.76 -51.92 -0.40 0.44 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.14 2.52 6.21 -52.49 -0.33 2.19 16 41 H 0.42 8.04 6.52 -40.82 -0.27 7.77 16 42 H 0.04 0.95 8.07 -51.92 -0.42 0.53 16 43 H 0.03 0.63 6.30 -51.93 -0.33 0.31 16 44 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 46 H 0.09 1.45 7.37 -51.93 -0.38 1.07 16 47 H 0.14 2.06 7.71 -52.49 -0.40 1.65 16 48 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 50 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 414.66 15.07 6.25 6.25 Total: -1.00 -28.49 414.66 -12.04 -40.54 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.14 Total: 14.23 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -5.34 Total: -0.10 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.86 Total: -63.15 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -28.49 -12.04 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095413331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.645 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds