Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47907 * 111.00417 * 2 1 4 4 C 1.54598 * 102.61169 * 265.51447 * 3 2 1 5 5 C 1.51564 * 102.77080 * 334.28498 * 4 3 2 6 6 C 1.38888 * 107.98473 * 16.22542 * 5 4 3 7 7 C 1.39427 * 119.12794 * 180.54139 * 6 5 4 8 8 C 1.37992 * 120.34638 * 359.48110 * 7 6 5 9 9 C 1.38144 * 120.34094 * 359.95464 * 8 7 6 10 10 C 1.38495 * 131.57688 * 195.73402 * 5 4 3 11 11 N 1.39943 * 120.02960 * 359.97246 * 10 5 4 12 12 C 1.34779 * 119.99768 * 145.07557 * 11 10 5 13 13 O 1.21585 * 120.00256 * 4.14939 * 12 11 10 14 14 N 1.34775 * 119.99550 * 184.15462 * 12 11 10 15 15 C 1.46497 * 120.00221 * 359.97438 * 14 12 11 16 16 C 1.50696 * 109.47070 * 90.00496 * 15 14 12 17 17 H 1.07995 * 119.99964 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00114 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99746 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47699 * 59.99756 * 20 18 16 22 22 H 1.48499 * 109.47163 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46940 * 299.99476 * 20 18 16 24 24 C 1.46502 * 119.99588 * 179.97438 * 14 12 11 25 25 C 1.50706 * 109.47165 * 90.00107 * 24 14 12 26 26 C 1.38679 * 120.41076 * 269.71764 * 25 24 14 27 27 C 1.38631 * 118.41512 * 179.77958 * 26 25 24 28 28 C 1.38227 * 119.16078 * 0.52066 * 27 26 25 29 29 N 1.31858 * 120.76605 * 359.71932 * 28 27 26 30 30 C 1.31889 * 121.72127 * 0.02562 * 29 28 27 31 31 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47354 * 299.96322 * 1 2 3 33 33 H 1.09003 * 109.46596 * 59.95965 * 1 2 3 34 34 H 1.09008 * 110.78085 * 23.78995 * 3 2 1 35 35 H 1.09001 * 110.78656 * 147.04078 * 3 2 1 36 36 H 1.09003 * 110.74650 * 92.83601 * 4 3 2 37 37 H 1.09004 * 110.73870 * 215.98933 * 4 3 2 38 38 H 1.08003 * 119.82505 * 179.49557 * 7 6 5 39 39 H 1.08003 * 119.82640 * 179.97438 * 8 7 6 40 40 H 1.08000 * 120.09188 * 180.19337 * 9 8 7 41 41 H 0.96997 * 119.99862 * 324.78972 * 11 10 5 42 42 H 1.09010 * 109.47236 * 210.00484 * 15 14 12 43 43 H 1.08997 * 109.47132 * 329.99995 * 15 14 12 44 44 H 0.96996 * 120.00016 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47212 * 209.99409 * 24 14 12 46 46 H 1.08999 * 109.47273 * 329.99557 * 24 14 12 47 47 H 1.08000 * 120.79667 * 0.02562 * 26 25 24 48 48 H 1.07995 * 120.41835 * 180.21710 * 27 26 25 49 49 H 1.08004 * 119.61726 * 179.74190 * 28 27 26 50 50 H 1.08003 * 119.61068 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 2.2303 1.6536 -1.5041 5 6 2.4327 0.2622 -2.0697 6 6 1.9709 -0.6531 -1.1327 7 6 2.0582 -2.0157 -1.4146 8 6 2.5868 -2.4470 -2.6141 9 6 3.0342 -1.5330 -3.5484 10 6 2.9544 -0.1723 -3.2769 11 7 3.4063 0.7577 -4.2198 12 6 4.4719 0.4698 -4.9932 13 8 4.9942 -0.6260 -4.9251 14 7 4.9586 1.3968 -5.8419 15 6 4.3290 2.7170 -5.9243 16 6 4.9809 3.6470 -4.9338 17 1 5.7835 3.2902 -4.3055 18 6 4.5519 4.9532 -4.8290 19 7 3.5741 5.3875 -5.5937 20 14 5.3604 6.1061 -3.6016 21 1 6.8068 6.2277 -3.9152 22 1 4.7214 7.4441 -3.6841 23 1 5.1953 5.5631 -2.2294 24 6 6.1172 1.0840 -6.6821 25 6 5.6469 0.4995 -7.9891 26 6 5.4807 -0.8705 -8.1261 27 6 5.0416 -1.3632 -9.3452 28 6 4.7964 -0.4798 -10.3797 29 7 4.9702 0.8168 -10.2150 30 6 5.3817 1.3211 -9.0679 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5133 0.8903 33 1 -0.3632 0.5145 -0.8897 34 1 1.2672 2.0761 0.4111 35 1 2.9360 1.4354 0.5544 36 1 1.3573 2.1318 -1.9484 37 1 3.1209 2.2642 -1.6532 38 1 1.7100 -2.7375 -0.6906 39 1 2.6508 -3.5046 -2.8237 40 1 3.4443 -1.8749 -4.4872 41 1 2.9500 1.6079 -4.3197 42 1 4.4510 3.1155 -6.9315 43 1 3.2672 2.6281 -5.6949 44 1 3.2725 6.3065 -5.5203 45 1 6.6831 1.9955 -6.8746 46 1 6.7537 0.3627 -6.1696 47 1 5.6845 -1.5374 -7.3014 48 1 4.8978 -2.4242 -9.4864 49 1 4.4582 -0.8560 -11.3340 50 1 5.5122 2.3888 -8.9705 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095413331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 46.706928 kcal Electronic energy + Delta-G solvation = -33329.756368 eV Core-core repulsion = 29128.824291 eV Total energy + Delta-G solvation = -4200.932077 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12202 -41.34938 -40.68793 -38.07441 -36.83259 -35.74484 -34.77337 -33.56096 -32.78967 -32.36446 -30.34809 -29.51029 -29.41503 -27.21663 -26.79006 -25.11592 -24.38906 -24.06133 -23.22774 -22.51570 -21.86079 -20.50721 -19.25679 -18.72497 -18.12839 -17.92188 -17.24311 -17.12980 -16.97430 -16.61062 -16.57836 -16.31638 -16.10931 -15.75463 -15.38709 -15.08660 -14.76156 -14.51112 -14.47616 -14.24209 -14.16010 -14.02243 -13.91491 -13.58615 -13.53067 -13.27857 -13.17893 -12.93153 -12.83000 -12.72229 -12.53789 -12.44204 -12.21777 -12.13262 -12.05694 -11.80528 -11.35731 -11.09462 -10.75964 -10.62342 -10.45981 -10.27111 -9.99202 -9.61613 -9.05593 -8.82807 -8.23437 -6.38979 0.10919 0.33296 0.36479 0.38990 1.39958 1.41955 1.48753 1.77828 2.13755 2.37410 2.69700 2.81751 2.82579 3.06118 3.09737 3.54283 3.64248 3.82301 3.88449 3.89157 4.04244 4.09532 4.10975 4.18170 4.26117 4.40419 4.46463 4.51734 4.54492 4.64147 4.65248 4.68930 4.72509 4.73552 4.78070 4.86327 4.92275 4.98208 5.01612 5.09967 5.20278 5.27228 5.37345 5.38862 5.49768 5.55920 5.57554 5.72132 5.77909 5.82653 5.98729 5.99590 6.06357 6.30859 6.63715 6.92275 7.01197 7.33035 7.55408 8.81046 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.007060 B = 0.003957 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.959691 B = 7074.064858 C =10344.160720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.498 5.498 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.187 4.187 6 C 0.097 3.903 7 C -0.130 4.130 8 C -0.082 4.082 9 C -0.150 4.150 10 C 0.182 3.818 11 N -0.681 5.681 12 C 0.706 3.294 13 O -0.611 6.611 14 N -0.606 5.606 15 C 0.259 3.741 16 C -0.545 4.545 17 H 0.051 0.949 18 C 0.029 3.971 19 N -0.915 5.915 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.180 3.820 25 C -0.156 4.156 26 C -0.062 4.062 27 C -0.170 4.170 28 C 0.089 3.911 29 N -0.511 5.511 30 C 0.101 3.899 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.026 0.974 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.411 0.589 42 H 0.028 0.972 43 H 0.015 0.985 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.136 0.864 48 H 0.166 0.834 49 H 0.185 0.815 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 -12.777 4.033 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.215 5.215 3 C -0.071 4.071 4 C -0.145 4.145 5 C -0.193 4.193 6 C 0.001 3.999 7 C -0.151 4.151 8 C -0.101 4.101 9 C -0.171 4.171 10 C 0.086 3.914 11 N -0.328 5.328 12 C 0.408 3.592 13 O -0.493 6.493 14 N -0.339 5.339 15 C 0.138 3.862 16 C -0.584 4.584 17 H 0.069 0.931 18 C -0.172 4.172 19 N -0.554 5.554 20 Si 0.777 3.223 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.198 1.198 24 C 0.056 3.944 25 C -0.160 4.160 26 C -0.089 4.089 27 C -0.189 4.189 28 C -0.068 4.068 29 N -0.220 5.220 30 C -0.056 4.056 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.146 0.854 41 H 0.249 0.751 42 H 0.046 0.954 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.154 0.846 48 H 0.183 0.817 49 H 0.202 0.798 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.216 -12.962 3.797 14.149 hybrid contribution 0.262 1.576 0.271 1.620 sum -3.954 -11.386 4.069 12.721 Atomic orbital electron populations 1.22570 0.84054 1.03515 1.01798 1.60337 1.09766 1.14927 1.36495 1.23199 1.02042 0.88020 0.93870 1.21586 1.02343 0.93339 0.97240 1.20890 1.07879 0.97381 0.93111 1.19571 0.97831 0.93654 0.88874 1.20668 1.03430 0.92717 0.98270 1.21084 0.96339 1.00371 0.92308 1.21282 1.02888 0.91018 1.01897 1.17277 0.97122 0.89471 0.87541 1.42829 1.31185 1.20841 1.37967 1.15900 0.80090 0.83993 0.79170 1.90759 1.63079 1.22760 1.72674 1.47374 1.32748 1.13920 1.39827 1.18970 0.91990 0.78085 0.97187 1.21565 1.19476 0.95971 1.21347 0.93060 1.25560 0.95215 0.99182 0.97257 1.69996 1.27965 1.17655 1.39781 0.85703 0.78860 0.78068 0.79645 1.19871 1.20726 1.19765 1.20074 0.86760 1.00967 0.86583 1.21301 1.02454 0.95214 0.97004 1.21773 0.94334 0.94640 0.98115 1.22466 1.00370 1.02899 0.93204 1.23335 0.95044 0.88119 1.00298 1.67718 1.12999 1.16440 1.24842 1.22728 0.94333 1.00359 0.88170 0.90090 0.88721 0.95500 0.87279 0.89435 0.90225 0.91336 0.83447 0.82537 0.85439 0.75125 0.95444 0.96704 0.92256 0.88961 0.89593 0.84605 0.81671 0.79776 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.29 127.69 1.19 1.66 16 2 N -0.50 -11.97 5.33 -713.45 -3.80 -15.77 16 3 C 0.06 1.30 7.00 86.65 0.61 1.91 16 4 C -0.11 -3.18 6.93 30.67 0.21 -2.97 16 5 C -0.19 -6.13 6.16 -19.37 -0.12 -6.25 16 6 C 0.10 2.74 5.59 38.27 0.21 2.96 16 7 C -0.13 -3.24 10.07 22.50 0.23 -3.01 16 8 C -0.08 -2.13 10.01 22.19 0.22 -1.91 16 9 C -0.15 -4.99 8.70 22.43 0.20 -4.80 16 10 C 0.18 6.61 6.29 38.09 0.24 6.85 16 11 N -0.68 -27.14 5.18 -317.37 -1.64 -28.78 16 12 C 0.71 29.61 8.12 179.05 1.45 31.06 16 13 O -0.61 -26.17 12.99 -3.98 -0.05 -26.22 16 14 N -0.61 -24.97 2.44 -848.56 -2.07 -27.04 16 15 C 0.26 11.99 4.96 85.63 0.43 12.42 16 16 C -0.55 -27.34 9.39 25.60 0.24 -27.10 16 17 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 18 C 0.03 1.47 5.46 84.66 0.46 1.94 16 19 N -0.92 -48.77 13.29 21.45 0.28 -48.48 16 20 Si 0.95 40.78 29.54 68.60 2.03 42.81 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.18 6.44 5.56 85.63 0.48 6.92 16 25 C -0.16 -5.15 5.48 -19.77 -0.11 -5.26 16 26 C -0.06 -1.82 9.86 22.47 0.22 -1.60 16 27 C -0.17 -4.05 10.11 22.36 0.23 -3.82 16 28 C 0.09 2.24 11.18 84.69 0.95 3.19 16 29 N -0.51 -16.32 10.36 -195.84 -2.03 -18.35 16 30 C 0.10 3.38 10.86 84.67 0.92 4.30 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.31 8.11 -2.39 -0.02 1.29 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 1.97 7.76 -2.38 -0.02 1.95 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.13 4.60 6.21 -2.91 -0.02 4.58 16 41 H 0.41 16.92 6.52 -92.71 -0.60 16.31 16 42 H 0.03 1.35 8.07 -2.38 -0.02 1.33 16 43 H 0.02 0.74 6.30 -2.39 -0.02 0.72 16 44 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 45 H 0.09 3.23 8.02 -2.39 -0.02 3.21 16 46 H 0.09 3.03 7.37 -2.39 -0.02 3.02 16 47 H 0.14 4.04 7.71 -2.91 -0.02 4.02 16 48 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 49 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 50 H 0.15 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -62.49 414.66 1.32 -61.17 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: 0.36 Total: 44.19 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 8.25 Total: 16.48 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -9.26 Total: -138.42 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -62.49 1.32 -61.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095413331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.873 kcal (2) G-P(sol) polarization free energy of solvation -62.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds