Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36229 * 117.00214 * 2 1 4 4 C 1.38677 * 122.58414 * 0.19254 * 3 2 1 5 5 C 1.33431 * 114.88125 * 180.31778 * 4 3 2 6 6 S 1.75864 * 109.66098 * 359.73462 * 5 4 3 7 7 C 1.33627 * 122.58735 * 179.97438 * 3 2 1 8 8 S 1.76189 * 125.19701 * 359.97438 * 7 3 2 9 9 O 1.42099 * 106.40696 * 66.17819 * 8 7 3 10 10 O 1.42098 * 106.40572 * 293.25885 * 8 7 3 11 11 N 1.65604 * 107.22129 * 179.71985 * 8 7 3 12 12 C 1.46500 * 119.99892 * 270.00072 * 11 8 7 13 13 C 1.50694 * 109.46932 * 264.99528 * 12 11 8 14 14 H 1.07998 * 120.00272 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99921 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46876 * 120.00341 * 17 15 13 20 20 H 1.48504 * 109.47110 * 239.99986 * 17 15 13 21 21 C 1.39676 * 120.00034 * 89.99336 * 11 8 7 22 22 C 1.38906 * 120.07171 * 155.00145 * 21 11 8 23 23 C 1.38111 * 119.92343 * 179.97438 * 22 21 11 24 24 C 1.38288 * 120.07382 * 0.28047 * 23 22 21 25 25 C 1.50698 * 119.92407 * 179.69843 * 24 23 22 26 26 C 1.38286 * 120.14755 * 359.44532 * 24 23 22 27 27 C 1.38112 * 120.07587 * 0.55318 * 26 24 23 28 28 H 1.09001 * 109.47345 * 300.00106 * 1 2 3 29 29 H 1.09002 * 109.47146 * 60.00760 * 1 2 3 30 30 H 1.09008 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.07997 * 122.55557 * 0.05074 * 4 3 2 32 32 H 1.07997 * 125.16481 * 179.77204 * 5 4 3 33 33 H 1.09002 * 109.47233 * 24.99524 * 12 11 8 34 34 H 1.09007 * 109.47183 * 144.99544 * 12 11 8 35 35 H 0.97009 * 119.99972 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.03932 * 359.96119 * 22 21 11 37 37 H 1.08002 * 119.96028 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.46763 * 90.00407 * 25 24 23 39 39 H 1.09001 * 109.46776 * 210.00059 * 25 24 23 40 40 H 1.09003 * 109.47041 * 330.00009 * 25 24 23 41 41 H 1.08002 * 119.96005 * 180.25011 * 26 24 23 42 42 H 1.07998 * 120.03682 * 179.74419 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 0.0039 5 6 2.1051 3.5066 -0.0034 6 16 3.8035 3.0502 -0.0083 7 6 3.3774 1.3438 0.0005 8 16 4.5283 0.0097 0.0019 9 8 4.3741 -0.6546 -1.2448 10 8 4.3823 -0.6449 1.2546 11 7 6.0462 0.6717 -0.0056 12 6 6.7135 0.9596 -1.2777 13 6 7.6066 -0.1959 -1.6492 14 1 7.6705 -1.0587 -1.0027 15 6 8.3415 -0.1521 -2.8150 16 7 8.2633 0.8982 -3.6025 17 14 9.4491 -1.5842 -3.2752 18 1 9.3599 -2.6349 -2.2297 19 1 9.0153 -2.1462 -4.5795 20 1 10.8523 -1.1100 -3.3827 21 6 6.6903 0.9556 1.2008 22 6 8.0774 1.0064 1.2542 23 6 8.7110 1.2880 2.4487 24 6 7.9663 1.5134 3.5919 25 6 8.6614 1.8136 4.8948 26 6 6.5851 1.4691 3.5409 27 6 5.9451 1.1882 2.3498 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2663 2.4501 0.0080 32 1 1.7334 4.5206 -0.0053 33 1 5.9645 1.1048 -2.0562 34 1 7.3130 1.8644 -1.1769 35 1 8.7806 0.9292 -4.4226 36 1 8.6597 0.8258 0.3628 37 1 9.7895 1.3272 2.4909 38 1 8.8008 2.8902 4.9926 39 1 8.0538 1.4492 5.7231 40 1 9.6324 1.3185 4.9111 41 1 6.0064 1.6497 4.4348 42 1 4.8664 1.1497 2.3116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095414623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -40.446118 kcal Electronic energy + Delta-G solvation = -29341.839596 eV Core-core repulsion = 25313.647499 eV Total energy + Delta-G solvation = -4028.192097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.04322 -39.15106 -36.60737 -36.02838 -35.79934 -35.20475 -32.75212 -31.03028 -30.47491 -30.21801 -27.46559 -27.03011 -25.48519 -24.36042 -23.00669 -21.96631 -20.84886 -20.03323 -19.50896 -18.30731 -17.23551 -16.84608 -16.55446 -16.11461 -15.88067 -15.61684 -14.90425 -14.71046 -14.65140 -14.44110 -14.04081 -13.88582 -13.51606 -13.30675 -13.06533 -12.99238 -12.89522 -12.73210 -12.15670 -11.98955 -11.92696 -11.83193 -11.52814 -11.36990 -11.24930 -11.22053 -11.08684 -10.94113 -10.87137 -10.78960 -10.67162 -10.37156 -10.25838 -9.86529 -9.25319 -9.07092 -8.50704 -8.39917 -8.17747 -7.30819 -6.12080 -4.16837 0.53492 0.83510 1.39126 1.72293 1.88432 1.96706 2.37246 3.20605 3.30043 3.38162 3.43554 3.51975 4.13165 4.38531 4.42318 4.50934 4.89031 4.91425 4.95410 5.11573 5.22899 5.25552 5.28415 5.28821 5.38212 5.41824 5.56517 5.58873 5.80178 5.82803 5.92400 6.00457 6.03697 6.25538 6.43613 6.59070 6.84847 6.90571 7.03134 7.07890 7.14384 7.33273 7.34768 7.75055 7.85433 8.07321 8.85790 9.48474 10.96305 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.005084 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.000173 B = 5506.411779 C = 7670.346364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.231 3.769 4 C -0.216 4.216 5 C -0.161 4.161 6 S 0.249 5.751 7 C -0.833 4.833 8 S 2.716 3.284 9 O -0.924 6.924 10 O -0.952 6.952 11 N -0.926 5.926 12 C 0.244 3.756 13 C -0.532 4.532 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.185 3.815 22 C -0.126 4.126 23 C -0.098 4.098 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.092 4.092 27 C -0.166 4.166 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.152 0.848 32 H 0.177 0.823 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 7.646 11.369 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.170 3.830 4 C -0.249 4.249 5 C -0.299 4.299 6 S 0.512 5.488 7 C -1.032 5.032 8 S 2.801 3.199 9 O -0.914 6.914 10 O -0.942 6.942 11 N -0.753 5.753 12 C 0.124 3.876 13 C -0.571 4.571 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.087 3.913 22 C -0.148 4.148 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.161 4.161 26 C -0.111 4.111 27 C -0.188 4.188 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.194 0.806 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.136 0.864 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.211 7.464 11.056 16.799 hybrid contribution -1.401 -0.657 -0.568 1.649 sum -11.612 6.807 10.488 17.063 Atomic orbital electron populations 1.23197 0.77208 1.04786 1.01656 1.86231 1.22473 1.25186 1.87803 1.17091 0.89302 0.85481 0.91097 1.20311 1.01850 0.91058 1.11723 1.25981 0.98496 1.02932 1.02486 1.84362 1.02854 0.92025 1.69514 1.35030 1.13055 1.20785 1.34292 1.01634 0.71647 0.72603 0.73976 1.93619 1.84898 1.69328 1.43531 1.93559 1.85755 1.71068 1.43832 1.55749 1.31410 1.75869 1.12293 1.19443 0.93732 0.98195 0.76254 1.21422 1.25388 1.03461 1.06805 0.91642 1.24900 0.96865 0.96191 0.95686 1.69927 1.41326 1.28713 1.12989 0.86443 0.79924 0.82435 0.78758 1.19442 1.20730 1.20823 1.17570 0.92803 0.96384 0.84520 1.21368 0.92862 1.01061 0.99512 1.20872 0.99289 0.99698 0.91870 1.19734 0.93659 1.04071 0.95523 1.20661 0.99919 1.01179 0.94317 1.20567 0.93635 1.00225 0.96680 1.21024 0.99683 1.05084 0.92965 0.92186 0.92097 0.87515 0.83051 0.80583 0.93352 0.93356 0.92555 0.83061 0.86252 0.91982 0.92224 0.92078 0.86425 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.92 101.05 1.00 1.26 16 2 O -0.30 -4.84 10.28 -20.47 -0.21 -5.05 16 3 C 0.23 3.72 6.60 -41.04 -0.27 3.45 16 4 C -0.22 -2.56 9.16 -41.10 -0.38 -2.94 16 5 C -0.16 -1.76 11.22 29.05 0.33 -1.44 16 6 S 0.25 3.64 23.11 -107.50 -2.48 1.16 16 7 C -0.83 -15.25 6.09 29.12 0.18 -15.07 16 8 S 2.72 60.83 4.90 -107.50 -0.53 60.30 16 9 O -0.92 -23.85 16.99 -57.18 -0.97 -24.83 16 10 O -0.95 -21.93 15.09 -57.18 -0.86 -22.79 16 11 N -0.93 -20.70 2.78 -59.81 -0.17 -20.86 16 12 C 0.24 6.10 4.47 -5.20 -0.02 6.07 16 13 C -0.53 -14.62 7.90 -34.44 -0.27 -14.89 16 14 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.18 3.78 6.10 -83.79 -0.51 3.27 16 22 C -0.13 -2.47 9.04 -39.38 -0.36 -2.83 16 23 C -0.10 -1.61 9.69 -39.61 -0.38 -1.99 16 24 C -0.13 -1.92 5.88 -104.59 -0.62 -2.54 16 25 C -0.10 -1.16 10.01 36.00 0.36 -0.80 16 26 C -0.09 -1.45 9.69 -39.61 -0.38 -1.84 16 27 C -0.17 -3.04 8.47 -39.38 -0.33 -3.38 16 28 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 29 H 0.06 0.47 7.85 -51.93 -0.41 0.06 16 30 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.15 1.24 6.91 -52.49 -0.36 0.87 16 32 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.05 1.28 7.61 -51.93 -0.40 0.89 16 34 H 0.05 1.20 7.74 -51.93 -0.40 0.80 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.15 3.22 6.17 -52.49 -0.32 2.90 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.12 2.21 5.77 -52.49 -0.30 1.91 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -34.57 379.64 -10.64 -45.21 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.10 Total: 1.11 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -1.76 Total: -31.91 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.57 Total: -45.43 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.04 Total: -52.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 64.47 SS G_CDS: -3.01 Total: 61.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.57 -10.64 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.765 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds