Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36229 * 117.00214 * 2 1 4 4 C 1.38677 * 122.58414 * 0.19254 * 3 2 1 5 5 C 1.33431 * 114.88125 * 180.31778 * 4 3 2 6 6 S 1.75864 * 109.66098 * 359.73462 * 5 4 3 7 7 C 1.33627 * 122.58735 * 179.97438 * 3 2 1 8 8 S 1.76189 * 125.19701 * 359.97438 * 7 3 2 9 9 O 1.42099 * 106.40696 * 66.17819 * 8 7 3 10 10 O 1.42098 * 106.40572 * 293.25885 * 8 7 3 11 11 N 1.65604 * 107.22129 * 179.71985 * 8 7 3 12 12 C 1.46500 * 119.99892 * 270.00072 * 11 8 7 13 13 C 1.50694 * 109.46932 * 264.99528 * 12 11 8 14 14 H 1.07998 * 120.00272 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99921 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46876 * 120.00341 * 17 15 13 20 20 H 1.48504 * 109.47110 * 239.99986 * 17 15 13 21 21 C 1.39676 * 120.00034 * 89.99336 * 11 8 7 22 22 C 1.38906 * 120.07171 * 155.00145 * 21 11 8 23 23 C 1.38111 * 119.92343 * 179.97438 * 22 21 11 24 24 C 1.38288 * 120.07382 * 0.28047 * 23 22 21 25 25 C 1.50698 * 119.92407 * 179.69843 * 24 23 22 26 26 C 1.38286 * 120.14755 * 359.44532 * 24 23 22 27 27 C 1.38112 * 120.07587 * 0.55318 * 26 24 23 28 28 H 1.09001 * 109.47345 * 300.00106 * 1 2 3 29 29 H 1.09002 * 109.47146 * 60.00760 * 1 2 3 30 30 H 1.09008 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.07997 * 122.55557 * 0.05074 * 4 3 2 32 32 H 1.07997 * 125.16481 * 179.77204 * 5 4 3 33 33 H 1.09002 * 109.47233 * 24.99524 * 12 11 8 34 34 H 1.09007 * 109.47183 * 144.99544 * 12 11 8 35 35 H 0.97009 * 119.99972 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.03932 * 359.96119 * 22 21 11 37 37 H 1.08002 * 119.96028 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.46763 * 90.00407 * 25 24 23 39 39 H 1.09001 * 109.46776 * 210.00059 * 25 24 23 40 40 H 1.09003 * 109.47041 * 330.00009 * 25 24 23 41 41 H 1.08002 * 119.96005 * 180.25011 * 26 24 23 42 42 H 1.07998 * 120.03682 * 179.74419 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 0.0039 5 6 2.1051 3.5066 -0.0034 6 16 3.8035 3.0502 -0.0083 7 6 3.3774 1.3438 0.0005 8 16 4.5283 0.0097 0.0019 9 8 4.3741 -0.6546 -1.2448 10 8 4.3823 -0.6449 1.2546 11 7 6.0462 0.6717 -0.0056 12 6 6.7135 0.9596 -1.2777 13 6 7.6066 -0.1959 -1.6492 14 1 7.6705 -1.0587 -1.0027 15 6 8.3415 -0.1521 -2.8150 16 7 8.2633 0.8982 -3.6025 17 14 9.4491 -1.5842 -3.2752 18 1 9.3599 -2.6349 -2.2297 19 1 9.0153 -2.1462 -4.5795 20 1 10.8523 -1.1100 -3.3827 21 6 6.6903 0.9556 1.2008 22 6 8.0774 1.0064 1.2542 23 6 8.7110 1.2880 2.4487 24 6 7.9663 1.5134 3.5919 25 6 8.6614 1.8136 4.8948 26 6 6.5851 1.4691 3.5409 27 6 5.9451 1.1882 2.3498 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2663 2.4501 0.0080 32 1 1.7334 4.5206 -0.0053 33 1 5.9645 1.1048 -2.0562 34 1 7.3130 1.8644 -1.1769 35 1 8.7806 0.9292 -4.4226 36 1 8.6597 0.8258 0.3628 37 1 9.7895 1.3272 2.4909 38 1 8.8008 2.8902 4.9926 39 1 8.0538 1.4492 5.7231 40 1 9.6324 1.3185 4.9111 41 1 6.0064 1.6497 4.4348 42 1 4.8664 1.1497 2.3116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095414623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -64.001088 kcal Electronic energy + Delta-G solvation = -29342.861016 eV Core-core repulsion = 25313.647499 eV Total energy + Delta-G solvation = -4029.213517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13228 -40.57481 -38.40741 -37.39666 -37.06227 -37.02098 -34.77564 -32.43458 -31.83336 -31.29311 -29.30574 -27.90595 -26.87032 -25.44720 -24.84958 -23.43605 -22.25620 -21.23097 -20.69405 -19.85840 -18.93062 -18.49169 -18.11308 -17.64577 -17.08724 -16.79014 -16.51226 -16.23613 -16.11828 -15.82194 -15.47730 -14.93556 -14.83740 -14.78342 -14.39653 -14.30459 -14.05291 -13.88608 -13.78993 -13.57939 -13.34711 -13.22419 -13.04327 -12.94724 -12.90683 -12.66658 -12.60658 -12.43167 -12.25722 -12.14445 -12.08147 -12.02517 -11.86863 -11.58635 -10.86815 -10.64169 -10.37760 -9.78098 -9.28968 -8.80500 -8.24659 -6.37735 -0.79839 -0.55139 0.21974 0.51445 0.58060 0.72697 1.34793 1.36262 1.38912 1.51066 1.83454 2.24978 2.37666 2.57515 2.96669 3.05228 3.44691 3.61237 3.72482 3.99520 4.08409 4.15041 4.23765 4.32200 4.33040 4.54448 4.57098 4.61597 4.62238 4.71975 4.79120 4.96568 5.00845 5.01946 5.05070 5.09693 5.25686 5.29114 5.51954 5.60684 5.79742 5.82047 5.83862 5.92337 5.97994 6.28642 6.67566 7.30195 8.82724 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.005084 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.000173 B = 5506.411779 C = 7670.346364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.340 6.340 3 C 0.237 3.763 4 C -0.220 4.220 5 C -0.117 4.117 6 S 0.216 5.784 7 C -0.878 4.878 8 S 2.720 3.280 9 O -0.980 6.980 10 O -0.974 6.974 11 N -0.930 5.930 12 C 0.266 3.734 13 C -0.547 4.547 14 H 0.050 0.950 15 C 0.021 3.979 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.264 1.264 21 C 0.151 3.849 22 C -0.150 4.150 23 C -0.098 4.098 24 C -0.116 4.116 25 C -0.102 4.102 26 C -0.090 4.090 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.199 0.801 32 H 0.230 0.770 33 H 0.023 0.977 34 H 0.042 0.958 35 H 0.270 0.730 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 9.580 13.724 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.254 6.254 3 C 0.174 3.826 4 C -0.252 4.252 5 C -0.255 4.255 6 S 0.479 5.521 7 C -1.082 5.082 8 S 2.813 3.187 9 O -0.971 6.971 10 O -0.965 6.965 11 N -0.757 5.757 12 C 0.144 3.856 13 C -0.586 4.586 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.189 1.189 21 C 0.055 3.945 22 C -0.172 4.172 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.158 4.158 26 C -0.109 4.109 27 C -0.195 4.195 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.216 0.784 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.171 0.829 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.484 9.345 13.437 19.994 hybrid contribution -1.169 -1.170 -1.182 2.033 sum -12.652 8.175 12.256 19.419 Atomic orbital electron populations 1.23684 0.73989 1.06684 1.04027 1.86204 1.25998 1.25935 1.87261 1.17653 0.88969 0.87118 0.88825 1.20662 1.03966 0.89072 1.11489 1.26584 0.95338 1.05083 0.98447 1.84408 1.06701 0.90093 1.70941 1.34258 1.13060 1.21008 1.39859 1.00729 0.71916 0.73381 0.72636 1.93536 1.85788 1.72248 1.45504 1.93503 1.86131 1.72895 1.43936 1.55419 1.31709 1.76491 1.12086 1.18925 0.92459 0.97065 0.77113 1.21606 1.26240 1.03703 1.07040 0.93208 1.25670 0.98113 0.98683 0.95503 1.70005 1.42125 1.30157 1.13399 0.85539 0.78930 0.79308 0.78180 1.19724 1.20315 1.18868 1.17850 0.93372 0.98775 0.84474 1.21294 0.92597 1.03210 1.00099 1.21166 1.00689 0.98726 0.91080 1.20220 0.93485 1.01313 0.96725 1.20747 1.00304 1.02646 0.92115 1.21020 0.94467 0.98716 0.96675 1.21139 0.99614 1.05423 0.93284 0.89417 0.89977 0.86160 0.78426 0.75380 0.95877 0.94046 0.92057 0.85876 0.83771 0.90058 0.90463 0.90881 0.82935 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.92 113.37 1.12 1.28 16 2 O -0.34 -10.84 10.28 -96.16 -0.99 -11.83 16 3 C 0.24 7.51 6.60 21.33 0.14 7.65 16 4 C -0.22 -4.46 9.16 21.29 0.20 -4.26 16 5 C -0.12 -2.13 11.22 66.73 0.75 -1.38 16 6 S 0.22 6.35 23.11 -56.49 -1.31 5.05 16 7 C -0.88 -33.37 6.09 66.77 0.41 -32.96 16 8 S 2.72 131.52 4.90 -56.49 -0.28 131.24 16 9 O -0.98 -55.30 16.99 -128.00 -2.17 -57.48 16 10 O -0.97 -48.03 15.09 -128.00 -1.93 -49.96 16 11 N -0.93 -45.06 2.78 -343.13 -0.95 -46.02 16 12 C 0.27 14.47 4.47 85.63 0.38 14.85 16 13 C -0.55 -32.20 7.90 25.60 0.20 -32.00 16 14 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 15 C 0.02 1.20 5.46 84.66 0.46 1.66 16 16 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 17 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 18 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.15 6.58 6.10 38.21 0.23 6.81 16 22 C -0.15 -6.21 9.04 22.40 0.20 -6.01 16 23 C -0.10 -3.16 9.69 22.25 0.22 -2.95 16 24 C -0.12 -3.22 5.88 -19.84 -0.12 -3.34 16 25 C -0.10 -1.85 10.01 71.24 0.71 -1.14 16 26 C -0.09 -2.70 9.69 22.25 0.22 -2.49 16 27 C -0.17 -6.51 8.47 22.40 0.19 -6.32 16 28 H 0.09 0.98 7.84 -2.39 -0.02 0.96 16 29 H 0.08 1.02 7.85 -2.39 -0.02 1.00 16 30 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.20 2.10 6.91 -2.91 -0.02 2.08 16 32 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.02 1.35 7.61 -2.39 -0.02 1.34 16 34 H 0.04 2.25 7.74 -2.38 -0.02 2.23 16 35 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 36 H 0.12 5.72 6.17 -2.91 -0.02 5.70 16 37 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 40 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.12 4.48 5.77 -2.91 -0.02 4.46 16 Total: -1.00 -83.61 379.64 1.05 -82.56 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.05 Total: 13.30 kcal Atomic # 6 Polarization: -65.90 SS G_CDS: 5.32 Total: -60.58 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -0.67 Total: -99.95 kcal Atomic # 8 Polarization: -114.17 SS G_CDS: -5.10 Total: -119.26 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 137.88 SS G_CDS: -1.58 Total: 136.29 kcal Total: -83.61 1.05 -82.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095414623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.564 kcal (2) G-P(sol) polarization free energy of solvation -83.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds