Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99452 * 2 1 4 4 H 1.48500 * 109.46924 * 239.99357 * 3 2 1 5 5 H 1.48496 * 109.47481 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47061 * 120.00184 * 3 2 1 7 7 C 1.38948 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99500 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00550 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99608 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.46904 * 180.02562 * 12 10 9 14 14 C 1.40021 * 119.99949 * 180.02562 * 13 12 10 15 15 C 1.38660 * 120.08365 * 0.02562 * 14 13 12 16 16 C 1.38371 * 119.98182 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.91311 * 180.02562 * 16 15 14 18 18 C 1.38355 * 120.16689 * 359.75239 * 16 15 14 19 19 C 1.38273 * 120.17876 * 0.51057 * 18 16 15 20 20 C 1.38654 * 120.01208 * 359.48518 * 19 18 16 21 21 N 1.40084 * 120.08318 * 180.28239 * 20 19 18 22 22 C 1.46839 * 111.00259 * 64.20763 * 21 20 19 23 23 C 1.53040 * 109.52401 * 174.15615 * 22 21 20 24 24 C 1.53122 * 109.27333 * 59.18585 * 23 22 21 25 25 C 1.53005 * 109.52032 * 182.44070 * 24 23 22 26 26 O 1.42894 * 109.46834 * 294.67685 * 25 24 23 27 27 C 1.53119 * 109.16037 * 302.34020 * 24 23 22 28 28 C 1.46845 * 110.99794 * 299.99862 * 21 20 19 29 29 H 0.97001 * 120.00367 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00415 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47108 * 60.00539 * 12 10 9 32 32 H 1.09000 * 109.46728 * 300.00396 * 12 10 9 33 33 H 0.97002 * 119.99971 * 0.02562 * 13 12 10 34 34 H 1.07992 * 120.01283 * 0.02562 * 15 14 13 35 35 H 1.07995 * 119.91251 * 180.27181 * 18 16 15 36 36 H 1.08002 * 119.99709 * 179.77035 * 19 18 16 37 37 H 1.08996 * 109.46816 * 294.17789 * 22 21 20 38 38 H 1.09008 * 109.46176 * 54.15059 * 22 21 20 39 39 H 1.09000 * 109.50567 * 299.24451 * 23 22 21 40 40 H 1.08999 * 109.50689 * 179.11918 * 23 22 21 41 41 H 1.08992 * 109.52751 * 62.24752 * 24 23 22 42 42 H 1.08996 * 109.47435 * 54.68046 * 25 24 23 43 43 H 1.09001 * 109.47006 * 174.68331 * 25 24 23 44 44 H 0.96703 * 114.00109 * 180.02562 * 26 25 24 45 45 H 1.08993 * 109.50566 * 297.71968 * 27 24 23 46 46 H 1.09003 * 109.50632 * 177.59239 * 27 24 23 47 47 H 1.09002 * 109.46814 * 305.85482 * 28 21 20 48 48 H 1.08997 * 109.46731 * 65.82639 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1960 -5.9764 0.0007 14 6 1.7293 -7.2965 -0.0002 15 6 0.3665 -7.5520 -0.0023 16 6 -0.0924 -8.8574 -0.0038 17 17 -1.7990 -9.1752 -0.0071 18 6 0.8056 -9.9100 -0.0082 19 6 2.1661 -9.6630 -0.0007 20 6 2.6340 -8.3579 0.0007 21 7 4.0121 -8.1060 0.0024 22 6 4.6384 -8.5974 -1.2315 23 6 6.1098 -8.1777 -1.2604 24 6 6.8249 -8.7578 -0.0369 25 6 8.2822 -8.2915 -0.0277 26 8 8.9662 -8.8443 -1.1539 27 6 6.1235 -8.2695 1.2336 28 6 4.6516 -8.6864 1.1900 29 1 -0.4851 0.8400 0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6177 -4.9206 -0.8903 32 1 0.6169 -4.9208 0.8897 33 1 3.1497 -5.7990 0.0018 34 1 -0.3367 -6.7324 -0.0037 35 1 0.4430 -10.9272 -0.0138 36 1 2.8644 -10.4869 -0.0004 37 1 4.5701 -9.6846 -1.2655 38 1 4.1232 -8.1740 -2.0938 39 1 6.1786 -7.0900 -1.2403 40 1 6.5784 -8.5559 -2.1689 41 1 6.7901 -9.8464 -0.0767 42 1 8.3158 -7.2033 -0.0803 43 1 8.7649 -8.6260 0.8906 44 1 9.8975 -8.5904 -1.2120 45 1 6.1924 -7.1833 1.2928 46 1 6.6017 -8.7133 2.1068 47 1 4.1460 -8.3279 2.0867 48 1 4.5832 -9.7733 1.1448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095418392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = -88.841659 kcal Electronic energy + Delta-G solvation = -30801.398749 eV Core-core repulsion = 26494.437332 eV Total energy + Delta-G solvation = -4306.961417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42500 -40.28106 -39.43261 -37.77786 -37.32447 -36.35821 -35.70002 -34.60879 -33.36312 -31.82363 -31.02932 -30.50321 -28.28942 -27.18180 -26.19739 -24.11973 -23.95614 -22.72800 -22.21250 -21.14611 -20.57187 -20.00233 -18.97029 -18.22835 -17.83862 -17.24076 -17.19475 -16.43889 -16.39218 -16.05671 -15.93189 -15.86045 -15.78433 -15.39742 -15.05316 -14.93155 -14.69825 -14.42503 -14.26477 -14.01358 -13.89115 -13.82320 -13.52912 -13.20644 -13.16559 -12.99070 -12.93672 -12.48678 -12.45331 -12.36113 -12.17606 -12.14187 -11.85985 -11.66294 -11.56244 -11.40537 -11.31126 -10.97934 -10.81128 -10.51877 -10.08622 -9.64013 -9.39721 -8.50784 -8.34303 -6.00438 0.16865 0.57177 1.19018 1.37592 1.41526 1.52139 1.93715 2.20823 2.43515 2.69653 2.84641 3.16518 3.19678 3.31634 3.77773 3.80343 3.91001 4.13552 4.16678 4.24435 4.28244 4.34954 4.36959 4.39280 4.40590 4.47213 4.53493 4.55291 4.59927 4.68059 4.76525 4.80048 4.89038 4.92091 4.97498 5.03765 5.16522 5.24145 5.34474 5.37536 5.40587 5.48756 5.67594 5.88774 6.08239 6.12870 6.49759 6.57553 6.85208 6.91289 7.05312 7.46329 7.98581 8.65938 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.005998 B = 0.003032 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4667.292561 B = 9233.555888 C =13507.966395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.124 3.876 13 N -0.717 5.717 14 C 0.243 3.757 15 C -0.203 4.203 16 C 0.010 3.990 17 Cl -0.071 7.071 18 C -0.164 4.164 19 C -0.081 4.081 20 C 0.006 3.994 21 N -0.509 5.509 22 C 0.068 3.932 23 C -0.104 4.104 24 C -0.082 4.082 25 C 0.081 3.919 26 O -0.591 6.591 27 C -0.107 4.107 28 C 0.066 3.934 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.413 0.587 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.395 0.605 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -22.345 1.177 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.197 5.197 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.004 4.004 13 N -0.347 5.347 14 C 0.136 3.864 15 C -0.228 4.228 16 C -0.017 4.017 17 Cl -0.042 7.042 18 C -0.186 4.186 19 C -0.102 4.102 20 C -0.092 4.092 21 N -0.231 5.231 22 C -0.058 4.058 23 C -0.142 4.142 24 C -0.101 4.101 25 C 0.003 3.997 26 O -0.400 6.400 27 C -0.145 4.145 28 C -0.060 4.060 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.252 0.748 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.245 0.755 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.087 0.913 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.603 -21.747 1.086 22.753 hybrid contribution 0.269 0.754 0.005 0.801 sum 6.871 -20.993 1.091 22.116 Atomic orbital electron populations 1.69659 1.06869 1.29625 1.49439 1.26059 0.96525 1.02467 0.95867 0.84985 0.77804 0.76525 0.79031 1.19651 1.19456 1.19576 1.19651 0.92830 0.83765 1.50459 0.90019 1.41823 1.09495 1.04518 1.63857 1.20585 0.88184 0.86129 0.83200 1.90490 1.15595 1.87570 1.57635 1.20863 0.91855 0.84099 1.03619 1.44490 1.09572 1.00843 1.79837 1.17693 0.91613 0.84091 0.93033 1.20503 0.93613 0.96485 1.12172 1.20681 0.84779 0.94047 1.02221 1.98361 1.13236 1.95839 1.96814 1.20828 0.91900 0.98731 1.07119 1.21420 0.95554 0.95951 0.97285 1.18349 0.89081 0.91237 1.10535 1.59290 0.99742 1.60601 1.03464 1.22089 0.94787 0.97974 0.90989 1.21528 0.93578 1.00431 0.98613 1.21141 0.93186 1.00730 0.95029 1.22215 0.92242 0.96683 0.88548 1.86413 1.29102 1.75855 1.48592 1.21565 0.93946 1.01512 0.97484 1.22114 0.94565 0.97503 0.91848 0.91084 0.76664 0.88868 0.88772 0.74805 0.84680 0.83496 0.83596 0.93227 0.92112 0.93069 0.90929 0.90365 0.94004 0.92038 0.75522 0.92339 0.89149 0.91294 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 13.05 21.66 0.28 -48.20 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 0.99 42.05 29.55 68.60 2.03 44.07 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.34 -18.77 9.68 84.04 0.81 -17.96 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.56 -28.11 5.29 -306.98 -1.62 -29.74 16 10 C 0.43 20.10 7.85 87.66 0.69 20.79 16 11 O -0.63 -33.63 15.24 -3.06 -0.05 -33.67 16 12 C 0.12 4.30 5.40 85.64 0.46 4.76 16 13 N -0.72 -24.18 5.70 -342.56 -1.95 -26.13 16 14 C 0.24 6.99 6.67 38.23 0.26 7.24 16 15 C -0.20 -5.35 9.09 22.40 0.20 -5.14 16 16 C 0.01 0.23 6.32 22.33 0.14 0.37 16 17 Cl -0.07 -1.53 28.95 -2.72 -0.08 -1.61 16 18 C -0.16 -3.28 9.82 22.31 0.22 -3.06 16 19 C -0.08 -1.63 8.70 22.38 0.19 -1.44 16 20 C 0.01 0.16 4.71 38.22 0.18 0.34 16 21 N -0.51 -12.24 3.79 -694.69 -2.64 -14.87 16 22 C 0.07 1.50 5.17 86.33 0.45 1.95 16 23 C -0.10 -2.24 5.25 30.65 0.16 -2.08 16 24 C -0.08 -1.46 2.49 -10.71 -0.03 -1.49 16 25 C 0.08 1.30 6.43 71.98 0.46 1.76 16 26 O -0.59 -9.90 13.26 -148.98 -1.98 -11.87 16 27 C -0.11 -1.92 5.38 30.65 0.16 -1.76 16 28 C 0.07 1.31 5.12 86.33 0.44 1.75 16 29 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 31 H 0.09 2.91 7.95 -2.39 -0.02 2.89 16 32 H 0.09 2.92 7.96 -2.39 -0.02 2.90 16 33 H 0.41 15.75 6.72 -92.71 -0.62 15.12 16 34 H 0.14 3.45 6.74 -2.91 -0.02 3.43 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.15 2.25 7.14 -2.91 -0.02 2.23 16 37 H 0.05 0.94 7.56 -2.39 -0.02 0.92 16 38 H 0.06 1.51 8.11 -2.38 -0.02 1.49 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.56 7.91 -2.39 -0.02 1.54 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.40 3.15 9.12 -74.05 -0.68 2.47 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 48 H 0.05 0.86 7.34 -2.39 -0.02 0.84 16 Total: -1.00 -65.34 404.65 -1.74 -67.07 By element: Atomic # 1 Polarization: 49.91 SS G_CDS: -1.01 Total: 48.90 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.28 Total: 6.05 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.93 Total: -118.94 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.02 Total: -45.55 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -65.34 -1.74 -67.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095418392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.767 kcal (2) G-P(sol) polarization free energy of solvation -65.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds