Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46890 * 2 1 4 4 C 1.53002 * 109.46754 * 120.00219 * 2 1 3 5 5 N 1.46494 * 109.46995 * 304.99562 * 4 2 1 6 6 S 1.65605 * 119.99898 * 165.00119 * 5 4 2 7 7 O 1.42094 * 106.40613 * 178.54222 * 6 5 4 8 8 O 1.42100 * 106.40130 * 311.46591 * 6 5 4 9 9 C 1.76206 * 107.21525 * 65.00240 * 6 5 4 10 10 C 1.38636 * 119.74851 * 269.72696 * 9 6 5 11 11 C 1.37620 * 120.24621 * 179.71917 * 10 9 6 12 12 C 1.40717 * 119.74192 * 0.57690 * 11 10 9 13 13 C 1.41396 * 120.24585 * 179.67941 * 12 11 10 14 14 H 1.07989 * 120.00421 * 204.40823 * 13 12 11 15 15 C 1.39948 * 119.99682 * 24.40164 * 13 12 11 16 16 N 1.30832 * 120.00025 * 17.85493 * 15 13 12 17 17 Si 1.86801 * 120.00152 * 197.84793 * 15 13 12 18 18 H 1.48499 * 109.46910 * 60.00378 * 17 15 13 19 19 H 1.48498 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47023 * 300.00217 * 17 15 13 21 21 C 1.40713 * 119.51379 * 359.70073 * 12 11 10 22 22 C 1.37617 * 119.74591 * 359.97438 * 21 12 11 23 23 C 1.50697 * 109.46961 * 240.00367 * 2 1 3 24 24 C 1.38425 * 122.54333 * 90.00257 * 23 2 1 25 25 C 1.33385 * 114.92217 * 180.02562 * 24 23 2 26 26 S 1.75886 * 109.59606 * 0.02562 * 25 24 23 27 27 C 1.33400 * 122.53793 * 270.01978 * 23 2 1 28 28 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47583 * 299.99713 * 1 2 3 30 30 H 1.09000 * 109.47042 * 60.00218 * 1 2 3 31 31 H 0.96698 * 114.00062 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47256 * 65.00712 * 4 2 1 33 33 H 1.09007 * 109.46652 * 185.00031 * 4 2 1 34 34 H 0.96998 * 120.00402 * 345.01191 * 5 4 2 35 35 H 1.08000 * 119.87778 * 359.97438 * 10 9 6 36 36 H 1.07994 * 120.12813 * 180.27734 * 11 10 9 37 37 H 0.97002 * 119.99692 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.13313 * 179.97438 * 21 12 11 39 39 H 1.08000 * 119.88077 * 180.02562 * 22 21 12 40 40 H 1.08000 * 122.53392 * 0.03855 * 24 23 2 41 41 H 1.08000 * 125.20373 * 180.02562 * 25 24 23 42 42 H 1.07999 * 125.19873 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.4559 -0.1037 2.4423 6 16 1.5240 -0.8888 3.8988 7 8 0.9111 -0.0274 4.8482 8 8 1.0848 -2.2187 3.6587 9 6 3.2231 -1.0003 4.3522 10 6 3.9686 -2.1018 3.9612 11 6 5.2978 -2.1966 4.3047 12 6 5.8966 -1.1759 5.0660 13 6 7.2598 -1.2656 5.4307 14 1 7.6221 -0.7375 6.3002 15 6 8.1395 -2.0391 4.6648 16 7 7.8125 -2.3889 3.4473 17 14 9.7805 -2.5718 5.3808 18 1 9.5472 -3.3919 6.5966 19 1 10.5216 -3.3753 4.3758 20 1 10.5774 -1.3710 5.7391 21 6 5.1287 -0.0653 5.4622 22 6 3.8029 0.0118 5.1016 23 6 2.0323 -0.7103 -1.2305 24 6 2.2806 -0.0507 -2.4219 25 6 2.7207 -0.8272 -3.4131 26 16 2.8411 -2.4895 -2.8513 27 6 2.2711 -2.0226 -1.2542 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4237 0.0004 32 1 1.7517 -1.7716 1.2055 33 1 3.1263 -0.6444 1.2952 34 1 1.0290 0.7651 2.3792 35 1 3.5055 -2.8865 3.3814 36 1 5.8779 -3.0534 3.9954 37 1 8.4225 -2.9247 2.9163 38 1 5.5781 0.7238 6.0470 39 1 3.2116 0.8634 5.4041 40 1 2.1295 1.0122 -2.5398 41 1 2.9657 -0.4871 -4.4085 42 1 2.1340 -2.6954 -0.4207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -79.348185 kcal Electronic energy + Delta-G solvation = -28505.289740 eV Core-core repulsion = 24475.410723 eV Total energy + Delta-G solvation = -4029.879017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.76477 -37.60046 -36.59640 -36.41779 -35.14564 -34.34323 -34.06127 -31.30671 -30.28528 -29.49232 -29.00857 -26.05239 -25.82525 -24.43997 -21.55387 -21.22668 -21.05784 -19.32053 -18.71771 -18.16756 -17.64423 -17.27005 -16.68858 -16.33444 -15.69035 -15.56293 -15.25178 -14.81600 -14.28098 -14.08976 -13.75413 -13.49558 -13.31390 -13.22556 -12.94031 -12.62791 -12.46272 -12.45467 -12.38510 -12.21085 -11.94937 -11.81785 -11.56052 -11.47652 -11.42655 -11.37317 -11.29687 -11.24447 -10.92146 -10.84586 -10.45478 -10.08298 -9.79689 -9.67960 -9.52713 -9.06626 -8.95469 -8.54513 -7.98925 -7.73186 -7.17565 -4.83090 0.85689 1.24281 1.52825 1.84890 2.23033 2.51906 2.85955 2.87362 2.89628 2.92919 3.63901 3.67817 4.10909 4.22545 4.48396 4.56737 4.70000 4.87342 5.01059 5.17539 5.23606 5.35379 5.41869 5.55237 5.63283 5.70247 5.83195 5.88744 6.03768 6.06975 6.09197 6.11670 6.22068 6.30624 6.65136 6.68176 6.88644 7.02290 7.29121 7.32965 7.40347 7.54883 7.60573 7.74215 7.94225 8.28766 8.48523 8.62175 9.73764 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.003361 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.116651 B = 8329.620435 C =10631.615151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.191 3.809 3 O -0.549 6.549 4 C 0.099 3.901 5 N -1.120 6.120 6 S 2.694 3.306 7 O -0.985 6.985 8 O -0.985 6.985 9 C -0.788 4.788 10 C -0.018 4.018 11 C -0.182 4.182 12 C 0.140 3.860 13 C -0.436 4.436 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.766 5.766 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.261 1.261 21 C -0.239 4.239 22 C 0.004 3.996 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.218 4.218 26 S 0.098 5.902 27 C -0.198 4.198 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.382 0.618 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 1.836 -12.846 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.147 3.853 3 O -0.355 6.355 4 C -0.028 4.028 5 N -0.877 5.877 6 S 2.792 3.208 7 O -0.976 6.976 8 O -0.976 6.976 9 C -0.884 4.884 10 C -0.038 4.038 11 C -0.202 4.202 12 C 0.136 3.864 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.388 5.388 17 Si 0.740 3.260 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.260 4.260 22 C -0.017 4.017 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.353 4.353 26 S 0.362 5.638 27 C -0.334 4.334 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.943 -0.038 -13.318 15.019 hybrid contribution 1.712 1.369 0.637 2.283 sum -5.231 1.331 -12.681 13.782 Atomic orbital electron populations 1.21733 0.91396 1.02956 1.03034 1.19834 0.95023 0.81621 0.88867 1.86503 1.27426 1.24912 1.96671 1.21893 0.98646 0.97562 0.84696 1.55641 1.73900 1.34131 1.24020 1.01204 0.75181 0.72668 0.71699 1.93493 1.76886 1.67732 1.59478 1.93476 1.81598 1.37255 1.85228 1.29150 1.23484 1.08511 1.27233 1.20246 0.94180 0.93896 0.95501 1.21328 0.93252 1.00388 1.05276 1.17842 0.92578 0.88988 0.86968 1.19925 0.93101 1.23430 1.09822 0.89463 1.26126 1.01406 0.93428 0.93939 1.69807 1.36989 1.25068 1.06975 0.86200 0.79899 0.79844 0.80057 1.18327 1.19879 1.18543 1.21052 0.94579 0.99801 1.10558 1.20163 0.94523 0.94544 0.92433 1.19481 1.04351 0.93654 0.97195 1.19968 1.01591 1.01553 0.91572 1.25600 1.09664 0.96255 1.03791 1.84339 1.65117 1.09128 1.05196 1.25694 1.07390 0.99140 1.01141 0.90774 0.91092 0.91707 0.76976 0.89753 0.90705 0.75216 0.88026 0.86010 0.89938 0.88210 0.87779 0.83779 0.81943 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.60 37.16 0.32 -1.11 16 2 C 0.19 2.16 0.94 -91.77 -0.09 2.07 16 3 O -0.55 -6.10 12.09 -35.23 -0.43 -6.52 16 4 C 0.10 1.32 4.90 -4.04 -0.02 1.30 16 5 N -1.12 -16.35 5.40 -10.61 -0.06 -16.41 16 6 S 2.69 50.62 5.73 -107.50 -0.62 50.00 16 7 O -0.99 -20.62 17.26 -57.17 -0.99 -21.60 16 8 O -0.99 -20.37 16.72 -57.17 -0.96 -21.33 16 9 C -0.79 -16.93 5.97 -39.29 -0.23 -17.16 16 10 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 11 C -0.18 -4.45 8.70 -38.87 -0.34 -4.78 16 12 C 0.14 3.48 5.57 -106.83 -0.60 2.89 16 13 C -0.44 -10.53 9.05 -37.74 -0.34 -10.87 16 14 H 0.09 2.00 7.91 -52.49 -0.41 1.58 16 15 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 16 N -0.77 -17.76 10.95 55.55 0.61 -17.15 16 17 Si 0.92 16.77 29.60 -169.99 -5.03 11.74 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 22 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 23 C -0.13 -1.46 4.69 -106.25 -0.50 -1.95 16 24 C -0.12 -1.16 9.52 -41.21 -0.39 -1.56 16 25 C -0.22 -2.01 11.23 29.04 0.33 -1.69 16 26 S 0.10 0.97 23.34 -107.50 -2.51 -1.54 16 27 C -0.20 -2.18 10.21 29.04 0.30 -1.88 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.76 6.89 -51.93 -0.36 0.40 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 3.51 9.04 45.56 0.41 3.93 16 32 H 0.08 1.11 6.19 -51.93 -0.32 0.79 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.41 5.37 7.58 -34.47 -0.26 5.11 16 35 H 0.10 2.10 7.59 -52.49 -0.40 1.70 16 36 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 37 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 40 H 0.14 1.30 7.82 -52.49 -0.41 0.89 16 41 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.17 1.78 6.66 -52.49 -0.35 1.43 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -29.82 377.98 -11.14 -40.96 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -4.07 Total: 16.38 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: -2.79 Total: -40.22 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.55 Total: -33.56 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.37 Total: -49.45 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -3.13 Total: 48.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.82 -11.14 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.392 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds