Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46890 * 2 1 4 4 C 1.53002 * 109.46754 * 120.00219 * 2 1 3 5 5 N 1.46494 * 109.46995 * 304.99562 * 4 2 1 6 6 S 1.65605 * 119.99898 * 165.00119 * 5 4 2 7 7 O 1.42094 * 106.40613 * 178.54222 * 6 5 4 8 8 O 1.42100 * 106.40130 * 311.46591 * 6 5 4 9 9 C 1.76206 * 107.21525 * 65.00240 * 6 5 4 10 10 C 1.38636 * 119.74851 * 269.72696 * 9 6 5 11 11 C 1.37620 * 120.24621 * 179.71917 * 10 9 6 12 12 C 1.40717 * 119.74192 * 0.57690 * 11 10 9 13 13 C 1.41396 * 120.24585 * 179.67941 * 12 11 10 14 14 H 1.07989 * 120.00421 * 204.40823 * 13 12 11 15 15 C 1.39948 * 119.99682 * 24.40164 * 13 12 11 16 16 N 1.30832 * 120.00025 * 17.85493 * 15 13 12 17 17 Si 1.86801 * 120.00152 * 197.84793 * 15 13 12 18 18 H 1.48499 * 109.46910 * 60.00378 * 17 15 13 19 19 H 1.48498 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47023 * 300.00217 * 17 15 13 21 21 C 1.40713 * 119.51379 * 359.70073 * 12 11 10 22 22 C 1.37617 * 119.74591 * 359.97438 * 21 12 11 23 23 C 1.50697 * 109.46961 * 240.00367 * 2 1 3 24 24 C 1.38425 * 122.54333 * 90.00257 * 23 2 1 25 25 C 1.33385 * 114.92217 * 180.02562 * 24 23 2 26 26 S 1.75886 * 109.59606 * 0.02562 * 25 24 23 27 27 C 1.33400 * 122.53793 * 270.01978 * 23 2 1 28 28 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47583 * 299.99713 * 1 2 3 30 30 H 1.09000 * 109.47042 * 60.00218 * 1 2 3 31 31 H 0.96698 * 114.00062 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47256 * 65.00712 * 4 2 1 33 33 H 1.09007 * 109.46652 * 185.00031 * 4 2 1 34 34 H 0.96998 * 120.00402 * 345.01191 * 5 4 2 35 35 H 1.08000 * 119.87778 * 359.97438 * 10 9 6 36 36 H 1.07994 * 120.12813 * 180.27734 * 11 10 9 37 37 H 0.97002 * 119.99692 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.13313 * 179.97438 * 21 12 11 39 39 H 1.08000 * 119.88077 * 180.02562 * 22 21 12 40 40 H 1.08000 * 122.53392 * 0.03855 * 24 23 2 41 41 H 1.08000 * 125.20373 * 180.02562 * 25 24 23 42 42 H 1.07999 * 125.19873 * 0.02562 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.4559 -0.1037 2.4423 6 16 1.5240 -0.8888 3.8988 7 8 0.9111 -0.0274 4.8482 8 8 1.0848 -2.2187 3.6587 9 6 3.2231 -1.0003 4.3522 10 6 3.9686 -2.1018 3.9612 11 6 5.2978 -2.1966 4.3047 12 6 5.8966 -1.1759 5.0660 13 6 7.2598 -1.2656 5.4307 14 1 7.6221 -0.7375 6.3002 15 6 8.1395 -2.0391 4.6648 16 7 7.8125 -2.3889 3.4473 17 14 9.7805 -2.5718 5.3808 18 1 9.5472 -3.3919 6.5966 19 1 10.5216 -3.3753 4.3758 20 1 10.5774 -1.3710 5.7391 21 6 5.1287 -0.0653 5.4622 22 6 3.8029 0.0118 5.1016 23 6 2.0323 -0.7103 -1.2305 24 6 2.2806 -0.0507 -2.4219 25 6 2.7207 -0.8272 -3.4131 26 16 2.8411 -2.4895 -2.8513 27 6 2.2711 -2.0226 -1.2542 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4237 0.0004 32 1 1.7517 -1.7716 1.2055 33 1 3.1263 -0.6444 1.2952 34 1 1.0290 0.7651 2.3792 35 1 3.5055 -2.8865 3.3814 36 1 5.8779 -3.0534 3.9954 37 1 8.4225 -2.9247 2.9163 38 1 5.5781 0.7238 6.0470 39 1 3.2116 0.8634 5.4041 40 1 2.1295 1.0122 -2.5398 41 1 2.9657 -0.4871 -4.4085 42 1 2.1340 -2.6954 -0.4207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095433179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -99.655214 kcal Electronic energy + Delta-G solvation = -28506.170319 eV Core-core repulsion = 24475.410723 eV Total energy + Delta-G solvation = -4030.759596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64333 -39.37865 -38.14314 -37.37776 -36.78571 -35.80684 -35.43211 -32.24670 -32.05874 -31.28786 -29.81671 -27.62103 -27.08164 -25.25874 -23.30448 -22.95363 -22.01301 -20.57618 -19.74911 -19.41974 -19.07286 -18.68645 -18.22147 -17.33504 -17.21073 -16.84346 -16.32261 -16.04337 -15.84048 -15.46365 -15.13588 -14.93671 -14.58238 -14.31804 -14.09934 -13.96128 -13.76171 -13.59208 -13.45523 -13.31754 -13.25560 -13.10616 -13.03673 -12.96805 -12.89399 -12.88681 -12.78158 -12.58368 -12.23383 -12.01465 -11.71848 -11.55067 -11.36157 -11.22102 -10.98162 -10.40479 -9.78909 -9.73663 -9.54762 -9.33247 -8.87476 -6.64959 -0.30525 0.07475 0.48815 0.75471 1.06116 1.08081 1.35740 1.44039 1.49370 1.72817 2.11147 2.23533 2.52385 2.93837 3.25762 3.51332 3.52906 3.68774 3.83394 4.01194 4.18203 4.30653 4.32761 4.38339 4.52582 4.64628 4.71114 4.82721 4.87227 4.89151 4.93683 4.98532 5.11065 5.14060 5.24335 5.25997 5.43810 5.50867 5.52410 5.59843 5.76381 5.93064 6.14782 6.17633 6.48938 6.68451 6.74236 6.81077 8.07193 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.003361 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.116651 B = 8329.620435 C =10631.615151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.200 3.800 3 O -0.553 6.553 4 C 0.093 3.907 5 N -1.102 6.102 6 S 2.727 3.273 7 O -1.002 7.002 8 O -1.001 7.001 9 C -0.796 4.796 10 C -0.019 4.019 11 C -0.206 4.206 12 C 0.112 3.888 13 C -0.468 4.468 14 H 0.090 0.910 15 C 0.038 3.962 16 N -0.793 5.793 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.255 1.255 21 C -0.258 4.258 22 C -0.001 4.001 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.211 4.211 26 S 0.101 5.899 27 C -0.219 4.219 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.425 0.575 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.298 0.702 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.187 0.813 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 2.309 -13.996 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.155 3.845 3 O -0.360 6.360 4 C -0.034 4.034 5 N -0.864 5.864 6 S 2.822 3.178 7 O -0.993 6.993 8 O -0.991 6.991 9 C -0.889 4.889 10 C -0.039 4.039 11 C -0.226 4.226 12 C 0.109 3.891 13 C -0.495 4.495 14 H 0.108 0.892 15 C -0.182 4.182 16 N -0.416 5.416 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.179 1.179 21 C -0.278 4.278 22 C -0.021 4.021 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.346 4.346 26 S 0.365 5.635 27 C -0.355 4.355 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.239 0.761 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.262 0.738 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.172 0.828 41 H 0.204 0.796 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.986 0.448 -14.459 16.064 hybrid contribution 1.623 1.251 0.893 2.235 sum -5.364 1.700 -13.565 14.686 Atomic orbital electron populations 1.21789 0.90819 1.03378 1.03503 1.19705 0.95396 0.81472 0.87910 1.86490 1.28288 1.24642 1.96588 1.22076 0.98269 0.98047 0.84976 1.55194 1.73643 1.34559 1.22979 1.00252 0.73468 0.72147 0.71917 1.93465 1.76695 1.68053 1.61049 1.93457 1.81293 1.38652 1.85675 1.29629 1.24981 1.07774 1.26541 1.20441 0.93731 0.94598 0.95165 1.21341 0.94159 1.00436 1.06665 1.18180 0.93502 0.89691 0.87730 1.20209 0.93497 1.25107 1.10639 0.89183 1.26946 1.04674 0.92723 0.93885 1.69833 1.38517 1.25278 1.07969 0.85141 0.75392 0.79500 0.79213 1.18383 1.18709 1.17895 1.21271 0.95382 0.99928 1.11251 1.20442 0.94341 0.95289 0.92017 1.19504 1.04421 0.93617 0.97359 1.20080 1.02125 1.02166 0.91351 1.25929 1.08442 0.95571 1.04691 1.84333 1.64835 1.09831 1.04526 1.25814 1.08290 0.99460 1.01907 0.90438 0.91103 0.90777 0.76072 0.89574 0.91441 0.73831 0.86631 0.87119 0.89031 0.87234 0.85810 0.82757 0.79559 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.60 71.98 0.62 -2.07 16 2 C 0.20 4.22 0.94 -11.54 -0.01 4.21 16 3 O -0.55 -11.29 12.09 -148.98 -1.80 -13.09 16 4 C 0.09 2.39 4.90 86.38 0.42 2.81 16 5 N -1.10 -30.65 5.40 -187.50 -1.01 -31.66 16 6 S 2.73 99.48 5.73 -56.49 -0.32 99.16 16 7 O -1.00 -40.49 17.26 -128.00 -2.21 -42.70 16 8 O -1.00 -40.31 16.72 -128.00 -2.14 -42.45 16 9 C -0.80 -34.04 5.97 22.46 0.13 -33.90 16 10 C -0.02 -0.88 9.49 22.22 0.21 -0.67 16 11 C -0.21 -10.34 8.70 22.73 0.20 -10.14 16 12 C 0.11 5.76 5.57 -21.29 -0.12 5.64 16 13 C -0.47 -23.15 9.05 23.46 0.21 -22.94 16 14 H 0.09 4.22 7.91 -2.92 -0.02 4.20 16 15 C 0.04 1.71 5.14 85.26 0.44 2.15 16 16 N -0.79 -37.31 10.95 21.83 0.24 -37.07 16 17 Si 0.99 34.08 29.60 68.60 2.03 36.12 16 18 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 19 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 20 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 21 C -0.26 -12.24 9.80 22.73 0.22 -12.02 16 22 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 23 C -0.13 -2.77 4.69 -20.92 -0.10 -2.87 16 24 C -0.13 -2.30 9.52 21.22 0.20 -2.10 16 25 C -0.21 -3.45 11.23 66.72 0.75 -2.70 16 26 S 0.10 1.86 23.34 -56.49 -1.32 0.54 16 27 C -0.22 -4.65 10.21 66.72 0.68 -3.96 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.37 6.89 -2.39 -0.02 1.35 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.39 6.59 9.04 -74.06 -0.67 5.92 16 32 H 0.09 2.20 6.19 -2.39 -0.01 2.19 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.42 10.22 7.58 -96.75 -0.73 9.49 16 35 H 0.12 4.80 7.59 -2.91 -0.02 4.78 16 36 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 37 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.12 4.85 7.60 -2.91 -0.02 4.83 16 40 H 0.15 2.44 7.82 -2.91 -0.02 2.42 16 41 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.17 3.50 6.66 -2.91 -0.02 3.48 16 Total: -1.00 -63.15 377.98 -2.78 -65.93 By element: Atomic # 1 Polarization: 43.94 SS G_CDS: -0.31 Total: 43.62 kcal Atomic # 6 Polarization: -82.47 SS G_CDS: 4.07 Total: -78.40 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.77 Total: -68.73 kcal Atomic # 8 Polarization: -92.09 SS G_CDS: -6.15 Total: -98.24 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.12 kcal Atomic # 16 Polarization: 101.35 SS G_CDS: -1.64 Total: 99.70 kcal Total: -63.15 -2.78 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.726 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds