Wall clock time and date at job start Tue Mar 31 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47002 * 2 1 4 4 C 1.53005 * 109.47337 * 239.99511 * 2 1 3 5 5 N 1.46498 * 109.46775 * 60.00229 * 4 2 1 6 6 S 1.65605 * 119.99767 * 165.00008 * 5 4 2 7 7 O 1.42099 * 106.40022 * 178.54024 * 6 5 4 8 8 O 1.42098 * 106.40112 * 311.45887 * 6 5 4 9 9 C 1.76197 * 107.21814 * 64.99876 * 6 5 4 10 10 C 1.38635 * 119.75034 * 269.72964 * 9 6 5 11 11 C 1.37614 * 120.24752 * 179.72416 * 10 9 6 12 12 C 1.40710 * 119.74651 * 0.56721 * 11 10 9 13 13 C 1.41393 * 120.24651 * 179.68838 * 12 11 10 14 14 H 1.08005 * 120.00408 * 204.41085 * 13 12 11 15 15 C 1.39945 * 120.00415 * 24.39888 * 13 12 11 16 16 N 1.30824 * 119.99637 * 17.85398 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 197.85203 * 15 13 12 18 18 H 1.48503 * 109.47132 * 90.00217 * 17 15 13 19 19 H 1.48499 * 109.46883 * 209.99879 * 17 15 13 20 20 H 1.48495 * 109.47029 * 330.00096 * 17 15 13 21 21 C 1.40719 * 119.51190 * 359.70380 * 12 11 10 22 22 C 1.37614 * 119.74061 * 0.02562 * 21 12 11 23 23 C 1.50703 * 109.47014 * 119.99552 * 2 1 3 24 24 C 1.38423 * 122.54074 * 269.74097 * 23 2 1 25 25 C 1.33386 * 114.92206 * 179.75741 * 24 23 2 26 26 S 1.75888 * 109.59248 * 0.47862 * 25 24 23 27 27 C 1.33387 * 122.53966 * 90.02310 * 23 2 1 28 28 H 1.09004 * 109.47098 * 60.00859 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47541 * 300.00406 * 1 2 3 31 31 H 0.96708 * 113.99950 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47062 * 180.02562 * 4 2 1 33 33 H 1.08993 * 109.46930 * 300.00015 * 4 2 1 34 34 H 0.97001 * 120.00432 * 344.99855 * 5 4 2 35 35 H 1.08000 * 119.87450 * 359.97438 * 10 9 6 36 36 H 1.08008 * 120.12745 * 180.27806 * 11 10 9 37 37 H 0.96995 * 120.00336 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.12641 * 179.97438 * 21 12 11 39 39 H 1.08004 * 119.87185 * 179.97438 * 22 21 12 40 40 H 1.08000 * 122.53728 * 359.97438 * 24 23 2 41 41 H 1.07995 * 125.20794 * 180.20086 * 25 24 23 42 42 H 1.08006 * 125.20073 * 0.03234 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.5518 -0.0308 -2.4454 6 16 2.2319 -0.3498 -3.9212 7 8 1.5260 0.4409 -4.8677 8 8 3.6391 -0.2727 -3.7396 9 6 1.8717 -2.0303 -4.3093 10 6 2.7514 -3.0295 -3.9224 11 6 2.4774 -4.3459 -4.2152 12 6 1.3050 -4.6749 -4.9204 13 6 1.0163 -6.0234 -5.2325 14 1 0.3768 -6.2588 -6.0704 15 6 1.5594 -7.0532 -4.4560 16 7 2.0318 -6.7939 -3.2639 17 14 1.6099 -8.7978 -5.1216 18 1 2.8851 -9.0124 -5.8518 19 1 1.5169 -9.7604 -3.9946 20 1 0.4680 -9.0076 -6.0474 21 6 0.4221 -3.6519 -5.3129 22 6 0.7137 -2.3428 -5.0044 23 6 2.0323 -0.7103 1.2305 24 6 2.2855 -0.0498 2.4204 25 6 2.7205 -0.8271 3.4132 26 16 2.8430 -2.4891 2.8508 27 6 2.2719 -2.0223 1.2541 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.9703 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 0.8300 0.6133 -2.3730 35 1 3.6532 -2.7741 -3.3858 36 1 3.1619 -5.1232 -3.9090 37 1 2.4086 -7.5075 -2.7257 38 1 -0.4803 -3.8931 -5.8549 39 1 0.0377 -1.5559 -5.3051 40 1 2.1383 1.0138 2.5370 41 1 2.9649 -0.4872 4.4087 42 1 2.1363 -2.6950 0.4200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:49 Heat of formation + Delta-G solvation = -79.591219 kcal Electronic energy + Delta-G solvation = -28533.097003 eV Core-core repulsion = 24503.207447 eV Total energy + Delta-G solvation = -4029.889556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.75998 -37.61213 -36.59883 -36.40333 -35.13273 -34.34098 -34.06879 -31.31894 -30.29417 -29.50343 -29.00329 -26.03988 -25.84209 -24.43236 -21.56470 -21.22193 -21.06343 -19.28039 -18.71439 -18.18603 -17.65564 -17.27122 -16.72515 -16.30142 -15.63594 -15.57370 -15.15528 -14.98437 -14.25235 -14.14500 -13.67624 -13.42211 -13.34053 -13.20759 -12.92249 -12.69289 -12.47743 -12.43781 -12.38535 -12.22300 -11.95091 -11.82569 -11.55254 -11.48207 -11.41441 -11.35706 -11.29739 -11.23671 -10.93924 -10.80668 -10.42703 -10.13686 -9.79989 -9.67307 -9.54872 -9.05483 -8.93631 -8.53982 -8.00075 -7.74369 -7.18930 -4.84160 0.86874 1.24527 1.54323 1.86879 2.21447 2.52082 2.85241 2.87672 2.90072 2.90452 3.63274 3.68403 4.11460 4.21019 4.47852 4.58135 4.70145 4.89514 5.00318 5.17850 5.23767 5.34448 5.45832 5.57254 5.66534 5.72836 5.77882 5.88845 6.02939 6.06642 6.09399 6.11250 6.23543 6.31608 6.64264 6.67369 6.87740 7.01195 7.28328 7.32133 7.39209 7.53797 7.59670 7.73466 7.93202 8.27993 8.47617 8.61087 9.72534 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.003449 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.457851 B = 8115.862722 C =10652.527686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.192 3.808 3 O -0.548 6.548 4 C 0.099 3.901 5 N -1.119 6.119 6 S 2.695 3.305 7 O -0.985 6.985 8 O -0.985 6.985 9 C -0.788 4.788 10 C -0.018 4.018 11 C -0.182 4.182 12 C 0.140 3.860 13 C -0.435 4.435 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.766 5.766 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C 0.003 3.997 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.220 4.220 26 S 0.100 5.900 27 C -0.195 4.195 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.380 0.620 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 6.401 12.628 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.147 3.853 3 O -0.354 6.354 4 C -0.028 4.028 5 N -0.876 5.876 6 S 2.793 3.207 7 O -0.976 6.976 8 O -0.976 6.976 9 C -0.884 4.884 10 C -0.038 4.038 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.462 4.462 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.389 5.389 17 Si 0.740 3.260 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.017 4.017 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.356 4.356 26 S 0.364 5.636 27 C -0.331 4.331 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.246 0.754 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.464 5.555 13.052 14.193 hybrid contribution -0.391 -0.221 -0.567 0.723 sum 0.073 5.334 12.485 13.577 Atomic orbital electron populations 1.21749 0.91349 1.03150 1.02993 1.19836 0.95080 0.81533 0.88867 1.86514 1.27158 1.24974 1.96708 1.21889 0.99788 0.96490 0.84670 1.55629 1.52992 1.55967 1.23027 1.01186 0.73033 0.74800 0.71651 1.93492 1.74731 1.69897 1.59483 1.93476 1.30631 1.87708 1.85736 1.29169 1.10401 1.20390 1.28430 1.20256 0.95267 0.92990 0.95329 1.21333 0.98597 0.94503 1.05833 1.17850 0.89272 0.92670 0.86607 1.19963 1.24335 0.90493 1.11444 0.89425 1.26121 0.92357 1.02624 0.93782 1.69804 1.25760 1.36127 1.07188 0.86147 0.80358 0.79743 0.79747 1.18762 1.19852 1.18175 1.21056 1.00972 0.92729 1.11206 1.20165 0.92904 0.96153 0.92474 1.19473 1.04595 0.93662 0.97231 1.19963 1.01657 1.01497 0.91596 1.25605 1.09907 0.96344 1.03704 1.84396 1.64944 1.08993 1.05258 1.25748 1.06973 0.99113 1.01231 0.91188 0.90516 0.91618 0.77243 0.90067 0.90380 0.75363 0.87984 0.85993 0.90005 0.88204 0.87772 0.83841 0.81990 0.80991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.65 37.16 0.32 -1.13 16 2 C 0.19 2.17 0.97 -91.77 -0.09 2.08 16 3 O -0.55 -6.04 12.15 -35.23 -0.43 -6.47 16 4 C 0.10 1.32 4.72 -4.04 -0.02 1.30 16 5 N -1.12 -16.41 5.72 -10.62 -0.06 -16.47 16 6 S 2.69 50.82 5.73 -107.50 -0.62 50.20 16 7 O -0.99 -20.68 17.26 -57.17 -0.99 -21.67 16 8 O -0.99 -20.60 16.72 -57.17 -0.96 -21.56 16 9 C -0.79 -16.84 5.97 -39.29 -0.23 -17.07 16 10 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 11 C -0.18 -4.41 8.70 -38.88 -0.34 -4.75 16 12 C 0.14 3.45 5.57 -106.83 -0.60 2.86 16 13 C -0.44 -10.45 9.05 -37.74 -0.34 -10.79 16 14 H 0.09 2.00 7.91 -52.48 -0.41 1.59 16 15 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 16 N -0.77 -17.57 10.95 55.55 0.61 -16.97 16 17 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 21 C -0.24 -5.54 9.80 -38.87 -0.38 -5.92 16 22 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 23 C -0.14 -1.49 4.69 -106.25 -0.50 -1.99 16 24 C -0.12 -1.15 9.52 -41.21 -0.39 -1.54 16 25 C -0.22 -2.01 11.23 29.04 0.33 -1.69 16 26 S 0.10 1.01 23.34 -107.50 -2.51 -1.50 16 27 C -0.19 -2.21 10.21 29.04 0.30 -1.92 16 28 H 0.07 0.74 6.60 -51.93 -0.34 0.39 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.38 3.34 9.04 45.56 0.41 3.75 16 32 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.08 1.06 6.86 -51.93 -0.36 0.71 16 34 H 0.41 5.35 7.08 -34.47 -0.24 5.11 16 35 H 0.10 2.10 7.59 -52.49 -0.40 1.70 16 36 H 0.12 2.99 6.16 -52.48 -0.32 2.67 16 37 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 40 H 0.14 1.27 7.81 -52.49 -0.41 0.86 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.17 1.97 6.78 -52.48 -0.36 1.62 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -29.76 377.88 -11.13 -40.89 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.06 Total: 16.28 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: -2.79 Total: -40.10 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.55 Total: -33.43 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.37 Total: -49.70 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -3.13 Total: 48.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.76 -11.13 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.698 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds