Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47002 * 2 1 4 4 C 1.53005 * 109.47337 * 239.99511 * 2 1 3 5 5 N 1.46498 * 109.46775 * 60.00229 * 4 2 1 6 6 S 1.65605 * 119.99767 * 165.00008 * 5 4 2 7 7 O 1.42099 * 106.40022 * 178.54024 * 6 5 4 8 8 O 1.42098 * 106.40112 * 311.45887 * 6 5 4 9 9 C 1.76197 * 107.21814 * 64.99876 * 6 5 4 10 10 C 1.38635 * 119.75034 * 269.72964 * 9 6 5 11 11 C 1.37614 * 120.24752 * 179.72416 * 10 9 6 12 12 C 1.40710 * 119.74651 * 0.56721 * 11 10 9 13 13 C 1.41393 * 120.24651 * 179.68838 * 12 11 10 14 14 H 1.08005 * 120.00408 * 204.41085 * 13 12 11 15 15 C 1.39945 * 120.00415 * 24.39888 * 13 12 11 16 16 N 1.30824 * 119.99637 * 17.85398 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 197.85203 * 15 13 12 18 18 H 1.48503 * 109.47132 * 90.00217 * 17 15 13 19 19 H 1.48499 * 109.46883 * 209.99879 * 17 15 13 20 20 H 1.48495 * 109.47029 * 330.00096 * 17 15 13 21 21 C 1.40719 * 119.51190 * 359.70380 * 12 11 10 22 22 C 1.37614 * 119.74061 * 0.02562 * 21 12 11 23 23 C 1.50703 * 109.47014 * 119.99552 * 2 1 3 24 24 C 1.38423 * 122.54074 * 269.74097 * 23 2 1 25 25 C 1.33386 * 114.92206 * 179.75741 * 24 23 2 26 26 S 1.75888 * 109.59248 * 0.47862 * 25 24 23 27 27 C 1.33387 * 122.53966 * 90.02310 * 23 2 1 28 28 H 1.09004 * 109.47098 * 60.00859 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47541 * 300.00406 * 1 2 3 31 31 H 0.96708 * 113.99950 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47062 * 180.02562 * 4 2 1 33 33 H 1.08993 * 109.46930 * 300.00015 * 4 2 1 34 34 H 0.97001 * 120.00432 * 344.99855 * 5 4 2 35 35 H 1.08000 * 119.87450 * 359.97438 * 10 9 6 36 36 H 1.08008 * 120.12745 * 180.27806 * 11 10 9 37 37 H 0.96995 * 120.00336 * 180.02562 * 16 15 13 38 38 H 1.07993 * 120.12641 * 179.97438 * 21 12 11 39 39 H 1.08004 * 119.87185 * 179.97438 * 22 21 12 40 40 H 1.08000 * 122.53728 * 359.97438 * 24 23 2 41 41 H 1.07995 * 125.20794 * 180.20086 * 25 24 23 42 42 H 1.08006 * 125.20073 * 0.03234 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.5518 -0.0308 -2.4454 6 16 2.2319 -0.3498 -3.9212 7 8 1.5260 0.4409 -4.8677 8 8 3.6391 -0.2727 -3.7396 9 6 1.8717 -2.0303 -4.3093 10 6 2.7514 -3.0295 -3.9224 11 6 2.4774 -4.3459 -4.2152 12 6 1.3050 -4.6749 -4.9204 13 6 1.0163 -6.0234 -5.2325 14 1 0.3768 -6.2588 -6.0704 15 6 1.5594 -7.0532 -4.4560 16 7 2.0318 -6.7939 -3.2639 17 14 1.6099 -8.7978 -5.1216 18 1 2.8851 -9.0124 -5.8518 19 1 1.5169 -9.7604 -3.9946 20 1 0.4680 -9.0076 -6.0474 21 6 0.4221 -3.6519 -5.3129 22 6 0.7137 -2.3428 -5.0044 23 6 2.0323 -0.7103 1.2305 24 6 2.2855 -0.0498 2.4204 25 6 2.7205 -0.8271 3.4132 26 16 2.8430 -2.4891 2.8508 27 6 2.2719 -2.0223 1.2541 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.9703 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 0.8300 0.6133 -2.3730 35 1 3.6532 -2.7741 -3.3858 36 1 3.1619 -5.1232 -3.9090 37 1 2.4086 -7.5075 -2.7257 38 1 -0.4803 -3.8931 -5.8549 39 1 0.0377 -1.5559 -5.3051 40 1 2.1383 1.0138 2.5370 41 1 2.9649 -0.4872 4.4087 42 1 2.1363 -2.6950 0.4200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095433180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = -99.889070 kcal Electronic energy + Delta-G solvation = -28533.977184 eV Core-core repulsion = 24503.207447 eV Total energy + Delta-G solvation = -4030.769737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64621 -39.38154 -38.14216 -37.37997 -36.78189 -35.81110 -35.42201 -32.26145 -32.06444 -31.28960 -29.82702 -27.62075 -27.08694 -25.26557 -23.30634 -22.95398 -22.01028 -20.54983 -19.75337 -19.42179 -19.07143 -18.71982 -18.24455 -17.29435 -17.21530 -16.82044 -16.33412 -16.02696 -15.81647 -15.58773 -15.10773 -14.95134 -14.51149 -14.28522 -14.09220 -13.95583 -13.76294 -13.60959 -13.53766 -13.31246 -13.24831 -13.12508 -13.04872 -12.94703 -12.90364 -12.88504 -12.78349 -12.59900 -12.21163 -11.98616 -11.69340 -11.55158 -11.34951 -11.23581 -11.05622 -10.36259 -9.79247 -9.73765 -9.54920 -9.34560 -8.87929 -6.65081 -0.30691 0.07328 0.48190 0.75065 1.06029 1.08967 1.35722 1.43091 1.49967 1.72661 2.11086 2.23721 2.52420 2.93841 3.25030 3.52689 3.53559 3.70383 3.80199 3.97046 4.18173 4.30881 4.33005 4.43527 4.53305 4.62231 4.71983 4.81027 4.87124 4.88982 4.92691 4.97777 5.10934 5.14066 5.24135 5.24746 5.44314 5.51037 5.52394 5.59677 5.76370 5.93141 6.14480 6.17261 6.49016 6.68428 6.75887 6.80917 8.06950 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.008549 B = 0.003449 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.457851 B = 8115.862722 C =10652.527686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.201 3.799 3 O -0.551 6.551 4 C 0.093 3.907 5 N -1.102 6.102 6 S 2.727 3.273 7 O -1.002 7.002 8 O -1.002 7.002 9 C -0.796 4.796 10 C -0.019 4.019 11 C -0.205 4.205 12 C 0.113 3.887 13 C -0.466 4.466 14 H 0.090 0.910 15 C 0.038 3.962 16 N -0.793 5.793 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.255 1.255 21 C -0.258 4.258 22 C -0.001 4.001 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.209 4.209 26 S 0.097 5.903 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.390 0.610 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.423 0.577 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.298 0.702 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.157 0.843 41 H 0.189 0.811 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 7.032 13.858 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.156 3.844 3 O -0.358 6.358 4 C -0.034 4.034 5 N -0.864 5.864 6 S 2.823 3.177 7 O -0.993 6.993 8 O -0.992 6.992 9 C -0.889 4.889 10 C -0.039 4.039 11 C -0.226 4.226 12 C 0.109 3.891 13 C -0.493 4.493 14 H 0.108 0.892 15 C -0.182 4.182 16 N -0.415 5.415 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.178 1.178 21 C -0.278 4.278 22 C -0.021 4.021 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.344 4.344 26 S 0.361 5.639 27 C -0.355 4.355 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.239 0.761 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.261 0.739 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.206 0.794 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.334 6.179 14.274 15.558 hybrid contribution -0.331 -0.290 -0.850 0.957 sum 0.003 5.889 13.424 14.659 Atomic orbital electron populations 1.21794 0.90937 1.03262 1.03594 1.19683 0.95346 0.81492 0.87891 1.86499 1.28247 1.24460 1.96610 1.22068 0.99853 0.96534 0.84948 1.55183 1.53202 1.55949 1.22016 1.00231 0.72383 0.73201 0.71915 1.93464 1.75002 1.69755 1.61057 1.93454 1.32032 1.87510 1.86251 1.29620 1.09732 1.21882 1.27684 1.20433 0.95866 0.92673 0.94950 1.21339 0.98850 0.95114 1.07249 1.18182 0.89864 0.93669 0.87369 1.20228 1.25724 0.91086 1.12284 0.89239 1.26932 0.91418 1.06257 0.93610 1.69826 1.25829 1.37808 1.08079 0.85094 0.80241 0.74679 0.79231 1.18580 1.18712 1.17834 1.21273 1.01400 0.93227 1.11886 1.20445 0.93386 0.96251 0.91983 1.19501 1.04305 0.93444 0.97481 1.20081 1.02113 1.02211 0.91212 1.25940 1.08473 0.95323 1.04658 1.84406 1.64788 1.10100 1.04574 1.25770 1.08399 0.99464 1.01847 0.90945 0.90707 0.90671 0.76075 0.90152 0.90880 0.73949 0.86719 0.87101 0.89043 0.87220 0.85739 0.82510 0.79388 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.65 71.98 0.62 -2.14 16 2 C 0.20 4.25 0.97 -11.54 -0.01 4.23 16 3 O -0.55 -10.94 12.15 -148.98 -1.81 -12.75 16 4 C 0.09 2.40 4.72 86.38 0.41 2.80 16 5 N -1.10 -30.83 5.72 -187.50 -1.07 -31.90 16 6 S 2.73 100.06 5.73 -56.49 -0.32 99.73 16 7 O -1.00 -40.65 17.26 -128.00 -2.21 -42.86 16 8 O -1.00 -40.90 16.72 -128.00 -2.14 -43.04 16 9 C -0.80 -33.94 5.97 22.46 0.13 -33.81 16 10 C -0.02 -0.87 9.49 22.22 0.21 -0.66 16 11 C -0.21 -10.26 8.70 22.73 0.20 -10.07 16 12 C 0.11 5.74 5.57 -21.29 -0.12 5.62 16 13 C -0.47 -22.98 9.05 23.46 0.21 -22.77 16 14 H 0.09 4.20 7.91 -2.91 -0.02 4.18 16 15 C 0.04 1.70 5.14 85.26 0.44 2.14 16 16 N -0.79 -37.03 10.95 21.83 0.24 -36.79 16 17 Si 0.99 34.03 29.60 68.60 2.03 36.06 16 18 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 19 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 20 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 21 C -0.26 -12.15 9.80 22.73 0.22 -11.93 16 22 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 23 C -0.13 -2.74 4.69 -20.92 -0.10 -2.84 16 24 C -0.13 -2.21 9.52 21.22 0.20 -2.01 16 25 C -0.21 -3.32 11.23 66.72 0.75 -2.57 16 26 S 0.10 1.87 23.34 -56.49 -1.32 0.55 16 27 C -0.22 -4.90 10.21 66.72 0.68 -4.21 16 28 H 0.07 1.39 6.60 -2.38 -0.02 1.38 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.39 6.00 9.04 -74.05 -0.67 5.33 16 32 H 0.08 2.10 7.75 -2.39 -0.02 2.08 16 33 H 0.07 1.99 6.86 -2.39 -0.02 1.97 16 34 H 0.42 10.19 7.08 -96.74 -0.69 9.50 16 35 H 0.11 4.78 7.59 -2.91 -0.02 4.76 16 36 H 0.11 5.67 6.16 -2.91 -0.02 5.66 16 37 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 38 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.12 4.83 7.60 -2.91 -0.02 4.80 16 40 H 0.16 2.32 7.81 -2.91 -0.02 2.30 16 41 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.16 3.86 6.78 -2.91 -0.02 3.84 16 Total: -1.00 -63.15 377.88 -2.81 -65.96 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: -0.27 Total: 43.07 kcal Atomic # 6 Polarization: -82.10 SS G_CDS: 4.06 Total: -78.04 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.83 Total: -68.69 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -6.16 Total: -98.64 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: 101.92 SS G_CDS: -1.64 Total: 100.28 kcal Total: -63.15 -2.81 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.931 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds