Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48498 * 109.47108 * 269.99651 * 3 2 1 5 5 H 1.48497 * 109.47403 * 29.99790 * 3 2 1 6 6 H 1.48506 * 109.47055 * 150.00011 * 3 2 1 7 7 C 1.37884 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99617 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47234 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99943 * 273.82914 * 10 9 7 12 12 C 1.52994 * 109.47125 * 270.21888 * 11 10 9 13 13 C 1.53001 * 117.49851 * 242.69890 * 12 11 10 14 14 C 1.53002 * 117.49777 * 174.04180 * 12 11 10 15 15 C 1.34775 * 120.00483 * 93.82768 * 10 9 7 16 16 O 1.21276 * 120.00152 * 184.27786 * 15 10 9 17 17 C 1.50700 * 119.99793 * 4.27309 * 15 10 9 18 18 H 1.09001 * 109.46697 * 44.58485 * 17 15 10 19 19 O 1.42891 * 109.47264 * 164.58561 * 17 15 10 20 20 C 1.50702 * 109.47288 * 284.59095 * 17 15 10 21 21 C 1.38250 * 119.98427 * 284.39068 * 20 17 15 22 22 C 1.38217 * 120.00359 * 179.76539 * 21 20 17 23 23 C 1.38319 * 119.99278 * 0.51206 * 22 21 20 24 24 Br 1.89107 * 120.00997 * 179.76478 * 23 22 21 25 25 C 1.38322 * 119.98088 * 359.74382 * 23 22 21 26 26 C 1.38218 * 119.99109 * 359.97438 * 25 23 22 27 27 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47388 * 60.00405 * 9 7 2 29 29 H 1.09004 * 109.47624 * 299.99955 * 9 7 2 30 30 H 1.09004 * 109.47031 * 30.21993 * 11 10 9 31 31 H 1.08998 * 109.47016 * 150.21315 * 11 10 9 32 32 H 1.08995 * 115.55089 * 28.37226 * 12 11 10 33 33 H 1.09001 * 117.49898 * 359.97438 * 13 12 11 34 34 H 1.09001 * 117.50167 * 145.01964 * 13 12 11 35 35 H 1.09005 * 117.50014 * 214.97998 * 14 12 11 36 36 H 1.09002 * 117.50234 * 359.97438 * 14 12 11 37 37 H 0.96700 * 114.00097 * 60.00288 * 19 17 15 38 38 H 1.07999 * 119.99515 * 0.02562 * 21 20 17 39 39 H 1.08009 * 120.00121 * 180.22706 * 22 21 20 40 40 H 1.08003 * 120.00659 * 179.97438 * 25 23 22 41 41 H 1.08001 * 119.99718 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.7432 -4.1156 -1.2628 12 6 1.8344 -5.2221 -1.8016 13 6 2.4335 -6.6230 -1.9411 14 6 2.1510 -5.7833 -3.1893 15 6 2.5816 -4.1746 1.1677 16 8 3.4273 -5.0438 1.1751 17 6 1.9542 -3.7227 2.4612 18 1 0.8755 -3.6354 2.3308 19 8 2.2342 -4.6784 3.4859 20 6 2.5226 -2.3835 2.8544 21 6 3.7965 -2.3026 3.3854 22 6 4.3200 -1.0740 3.7416 23 6 3.5653 0.0734 3.5765 24 35 4.2787 1.7538 4.0699 25 6 2.2889 -0.0087 3.0501 26 6 1.7682 -1.2370 2.6887 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6246 -2.5563 0.8920 30 1 2.7924 -3.3015 -1.9860 31 1 3.7437 -4.5154 -1.0973 32 1 0.7852 -5.1497 -1.5154 33 1 3.4753 -6.7563 -1.6494 34 1 1.7783 -7.4723 -1.7470 35 1 1.3100 -6.0803 -3.8160 36 1 3.0066 -5.3638 -3.7187 37 1 3.1773 -4.8076 3.6561 38 1 4.3841 -3.1989 3.5180 39 1 5.3167 -1.0104 4.1530 40 1 1.6991 0.8869 2.9214 41 1 0.7717 -1.3012 2.2773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095450384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -39.018628 kcal Electronic energy + Delta-G solvation = -26140.156134 eV Core-core repulsion = 22452.801674 eV Total energy + Delta-G solvation = -3687.354460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59589 -39.87231 -38.44496 -37.23971 -36.52244 -34.48494 -33.46325 -31.92679 -31.07729 -29.56196 -28.66523 -26.46169 -24.90293 -23.74775 -23.20101 -22.68873 -21.66503 -20.43349 -18.74316 -18.48304 -18.40934 -17.61901 -16.69755 -16.57551 -16.37188 -15.99248 -15.83927 -15.40547 -14.93175 -14.71805 -14.65828 -14.38976 -14.27432 -14.05948 -13.59820 -13.32742 -13.09227 -12.93736 -12.70147 -12.61344 -12.55353 -12.34383 -12.19655 -12.01952 -11.95744 -11.75015 -11.52848 -11.30327 -11.25386 -10.84995 -10.64499 -10.48402 -9.78151 -9.51546 -9.43268 -8.18704 -6.22871 0.10070 0.49922 0.62557 1.34457 1.42949 1.49964 1.63239 2.16866 2.42061 2.70414 2.93986 3.14906 3.42040 3.62503 3.72821 3.82217 3.86354 3.99823 4.03183 4.14382 4.20227 4.40903 4.47022 4.62130 4.67844 4.76588 4.77667 4.82792 4.93376 5.01938 5.08682 5.20562 5.24146 5.26859 5.29239 5.39686 5.58884 5.68520 5.82111 5.92909 6.07431 6.47215 6.58707 6.82487 7.21930 7.43412 8.85996 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.004159 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.348250 B = 6730.376845 C = 8057.175765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.044 0.956 9 C 0.244 3.756 10 N -0.587 5.587 11 C 0.150 3.850 12 C -0.182 4.182 13 C -0.172 4.172 14 C -0.157 4.157 15 C 0.493 3.507 16 O -0.580 6.580 17 C 0.146 3.854 18 H 0.129 0.871 19 O -0.539 6.539 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.108 4.108 23 C -0.087 4.087 24 Br -0.060 7.060 25 C -0.106 4.106 26 C -0.025 4.025 27 H 0.267 0.733 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.389 0.611 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -2.311 4.626 7.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.124 3.876 10 N -0.317 5.317 11 C 0.027 3.973 12 C -0.201 4.201 13 C -0.209 4.209 14 C -0.194 4.194 15 C 0.281 3.719 16 O -0.462 6.462 17 C 0.084 3.916 18 H 0.146 0.854 19 O -0.346 6.346 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.167 4.167 24 Br 0.025 6.975 25 C -0.126 4.126 26 C -0.044 4.044 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.239 0.761 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.068 -2.026 4.838 7.294 hybrid contribution 0.550 1.119 -0.542 1.359 sum 5.618 -0.907 4.296 7.130 Atomic orbital electron populations 1.69930 1.06309 1.27743 1.50215 1.25014 0.94836 0.99810 0.94626 0.86504 0.80859 0.82400 0.77988 1.21633 1.20321 1.18260 1.21297 0.92695 0.90779 1.50330 0.93763 1.19370 0.87522 0.82655 0.98080 1.48157 1.44655 1.33510 1.05333 1.20901 0.95981 0.95534 0.84912 1.22625 0.99785 0.95627 1.02078 1.23006 1.01660 0.93821 1.02433 1.23027 1.03973 1.02606 0.89842 1.21387 0.82419 0.81368 0.86688 1.90581 1.34211 1.33913 1.87482 1.20521 1.00737 0.85492 0.84844 0.85412 1.86565 1.31774 1.61519 1.54736 1.20072 0.95728 0.94503 1.00923 1.20992 0.94360 0.98152 0.98186 1.21046 1.00215 0.90373 1.01083 1.21843 0.96966 0.91697 1.06167 1.96597 1.85282 1.24420 1.91167 1.20846 0.94273 0.98287 0.99211 1.20928 1.00357 0.90892 0.92203 0.92329 0.95835 0.94225 0.90462 0.91422 0.88799 0.89348 0.88357 0.87301 0.87955 0.76080 0.83852 0.83214 0.86769 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.14 13.24 21.45 0.28 -43.85 16 2 C 0.06 2.79 3.86 84.66 0.33 3.12 16 3 Si 0.90 39.36 27.21 68.60 1.87 41.23 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.51 -23.58 6.32 25.60 0.16 -23.42 16 8 H 0.04 2.19 7.81 -2.92 -0.02 2.16 16 9 C 0.24 10.34 4.64 85.63 0.40 10.74 16 10 N -0.59 -22.71 2.46 -826.16 -2.03 -24.74 16 11 C 0.15 5.25 5.74 86.38 0.50 5.75 16 12 C -0.18 -5.51 6.01 -10.79 -0.06 -5.57 16 13 C -0.17 -4.53 10.18 30.62 0.31 -4.22 16 14 C -0.16 -3.71 10.25 30.62 0.31 -3.39 16 15 C 0.49 18.92 6.92 87.66 0.61 19.52 16 16 O -0.58 -23.85 15.86 15.55 0.25 -23.61 16 17 C 0.15 5.05 2.91 29.10 0.08 5.13 16 18 H 0.13 4.41 6.54 -2.39 -0.02 4.39 16 19 O -0.54 -17.12 12.97 -130.41 -1.69 -18.81 16 20 C -0.11 -3.83 4.35 -19.86 -0.09 -3.91 16 21 C -0.10 -3.01 9.25 22.27 0.21 -2.81 16 22 C -0.11 -3.23 9.79 22.28 0.22 -3.01 16 23 C -0.09 -2.92 6.22 22.31 0.14 -2.78 16 24 Br -0.06 -1.78 33.70 -20.37 -0.69 -2.47 16 25 C -0.11 -3.91 7.68 22.29 0.17 -3.74 16 26 C -0.02 -0.93 5.60 22.26 0.12 -0.80 16 27 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 28 H 0.02 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.04 1.69 4.16 -2.39 -0.01 1.68 16 30 H 0.08 2.75 8.07 -2.38 -0.02 2.73 16 31 H 0.07 2.44 7.09 -2.39 -0.02 2.42 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.39 10.34 7.28 -74.06 -0.54 9.81 16 38 H 0.14 3.71 6.97 -2.91 -0.02 3.69 16 39 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.11 4.32 7.33 -2.91 -0.02 4.30 16 41 H 0.13 5.26 5.90 -2.91 -0.02 5.24 16 Total: -1.00 -52.65 352.73 1.93 -50.72 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.53 Total: 30.91 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.41 Total: -9.39 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.74 Total: -68.59 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.45 Total: -42.41 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.87 Total: 41.23 kcal Atomic # 35 Polarization: -1.78 SS G_CDS: -0.69 Total: -2.47 kcal Total: -52.65 1.93 -50.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095450384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.705 kcal (2) G-P(sol) polarization free energy of solvation -52.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds