Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47302 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.47029 * 29.99816 * 3 2 1 6 6 H 1.48497 * 109.47018 * 149.99760 * 3 2 1 7 7 C 1.37875 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00480 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99701 * 269.99727 * 10 9 7 12 12 C 1.52993 * 109.46856 * 83.93620 * 11 10 9 13 13 C 1.53004 * 117.50041 * 243.46989 * 12 11 10 14 14 C 1.53001 * 117.49894 * 174.81188 * 12 11 10 15 15 C 1.34777 * 120.00388 * 89.99722 * 10 9 7 16 16 O 1.21279 * 119.99893 * 356.31410 * 15 10 9 17 17 C 1.50699 * 119.99967 * 176.30751 * 15 10 9 18 18 H 1.08994 * 109.47709 * 320.86692 * 17 15 10 19 19 O 1.42895 * 109.47145 * 200.86101 * 17 15 10 20 20 C 1.50707 * 109.46838 * 80.86543 * 17 15 10 21 21 C 1.38241 * 119.99169 * 69.95400 * 20 17 15 22 22 C 1.38221 * 120.00969 * 179.76655 * 21 20 17 23 23 C 1.38322 * 119.99000 * 0.51437 * 22 21 20 24 24 Br 1.89095 * 120.01169 * 179.72165 * 23 22 21 25 25 C 1.38328 * 119.97933 * 359.73850 * 23 22 21 26 26 C 1.38224 * 119.98853 * 0.02562 * 25 23 22 27 27 H 0.96993 * 120.00150 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46679 * 299.99975 * 9 7 2 29 29 H 1.08997 * 109.47471 * 59.99803 * 9 7 2 30 30 H 1.08997 * 109.46879 * 203.93299 * 11 10 9 31 31 H 1.09001 * 109.46863 * 323.93583 * 11 10 9 32 32 H 1.09001 * 115.55476 * 29.14372 * 12 11 10 33 33 H 1.08998 * 117.49338 * 359.97438 * 13 12 11 34 34 H 1.08997 * 117.49956 * 145.02250 * 13 12 11 35 35 H 1.09001 * 117.49967 * 214.98047 * 14 12 11 36 36 H 1.08998 * 117.49674 * 359.97438 * 14 12 11 37 37 H 0.96703 * 114.00437 * 300.00635 * 19 17 15 38 38 H 1.08004 * 119.99291 * 0.02647 * 21 20 17 39 39 H 1.08006 * 120.00155 * 180.27816 * 22 21 20 40 40 H 1.07999 * 120.00675 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.99067 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.2437 -3.2660 1.2698 12 6 2.9322 -3.8602 1.7870 13 6 2.3893 -3.3260 3.1140 14 6 2.9977 -4.7289 3.0448 15 6 4.2250 -3.2103 -1.1662 16 8 3.9602 -2.6627 -2.2154 17 6 4.8059 -4.6008 -1.1675 18 1 5.5677 -4.6772 -0.3918 19 8 5.3945 -4.8699 -2.4415 20 6 3.7124 -5.6022 -0.8979 21 6 2.7403 -5.8376 -1.8522 22 6 1.7399 -6.7595 -1.6072 23 6 1.7055 -7.4387 -0.4028 24 35 0.3327 -8.6943 -0.0639 25 6 2.6754 -7.1991 0.5539 26 6 3.6782 -6.2806 0.3061 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 4.9685 -4.0651 1.1149 31 1 4.6345 -2.5574 2.0000 32 1 2.2072 -4.1368 1.0215 33 1 2.9669 -2.5515 3.6187 34 1 1.3072 -3.2515 3.2217 35 1 2.3156 -5.5768 3.1069 36 1 3.9753 -4.8774 3.5034 37 1 4.7730 -4.8196 -3.1806 38 1 2.7649 -5.3042 -2.7910 39 1 0.9831 -6.9466 -2.3547 40 1 2.6488 -7.7289 1.4946 41 1 4.4358 -6.0937 1.0529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095450385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -20.552433 kcal Electronic energy + Delta-G solvation = -26039.273328 eV Core-core repulsion = 22352.719623 eV Total energy + Delta-G solvation = -3686.553705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46268 -38.69787 -37.36665 -36.16710 -34.52626 -32.78648 -32.36441 -31.16400 -30.15617 -28.63702 -26.85645 -25.76128 -22.98010 -22.66518 -21.99848 -21.38861 -20.61825 -18.97437 -17.76902 -17.17802 -16.82646 -16.39796 -15.67894 -15.31870 -14.99003 -14.77600 -14.42180 -14.06568 -13.73299 -13.55015 -13.46131 -13.33840 -13.02307 -12.50714 -12.45411 -12.16454 -11.69103 -11.66881 -11.45782 -11.30684 -11.19120 -11.00846 -10.99301 -10.65095 -10.54791 -10.37906 -10.19629 -10.00014 -9.62564 -9.49141 -9.16833 -9.04191 -8.58770 -8.53892 -7.86705 -6.08190 -4.05915 0.93110 1.25307 1.53119 3.02026 3.27030 3.32644 3.35136 3.49225 3.59961 4.15296 4.38619 4.43357 4.56849 4.62401 4.76502 4.83882 5.03875 5.08089 5.19210 5.24081 5.25360 5.37907 5.44559 5.53942 5.65242 5.74271 5.81729 5.84834 5.97686 6.07286 6.11562 6.29876 6.35991 6.46222 6.59545 6.68186 6.68985 6.85675 7.20694 7.47991 7.58956 8.07476 8.44651 8.74003 8.96666 9.51867 11.05030 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003659 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.523351 B = 7650.756236 C = 8275.664874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.076 0.924 9 C 0.216 3.784 10 N -0.581 5.581 11 C 0.140 3.860 12 C -0.148 4.148 13 C -0.160 4.160 14 C -0.190 4.190 15 C 0.486 3.514 16 O -0.529 6.529 17 C 0.130 3.870 18 H 0.125 0.875 19 O -0.536 6.536 20 C -0.095 4.095 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.084 4.084 24 Br -0.057 7.057 25 C -0.090 4.090 26 C -0.084 4.084 27 H 0.263 0.737 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.384 0.616 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -18.176 3.831 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.094 0.906 9 C 0.096 3.904 10 N -0.312 5.312 11 C 0.016 3.984 12 C -0.167 4.167 13 C -0.197 4.197 14 C -0.228 4.228 15 C 0.272 3.728 16 O -0.406 6.406 17 C 0.067 3.933 18 H 0.143 0.857 19 O -0.342 6.342 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.164 4.164 24 Br 0.028 6.972 25 C -0.110 4.110 26 C -0.103 4.103 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.234 0.766 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.248 -18.274 3.745 19.672 hybrid contribution -0.172 1.395 -0.226 1.424 sum 6.076 -16.879 3.519 18.281 Atomic orbital electron populations 1.69885 1.06111 1.26810 1.50769 1.24822 0.94699 0.98702 0.94685 0.86930 0.80189 0.84228 0.78782 1.20041 1.21152 1.19190 1.21227 0.88792 0.94747 1.50760 0.90559 1.19715 0.96192 0.77269 0.97238 1.47899 1.63520 1.15628 1.04170 1.21167 0.94860 0.95940 0.86405 1.22646 0.99675 1.02710 0.91691 1.22878 1.01109 0.95442 1.00283 1.23006 1.02183 0.94950 1.02634 1.20928 0.79520 0.87714 0.84662 1.90694 1.51755 1.67155 1.31017 1.20812 0.94114 0.90149 0.88231 0.85719 1.86567 1.39768 1.92438 1.15392 1.20280 0.96807 0.97322 0.95259 1.20969 0.93417 0.96889 0.99828 1.21038 0.98553 0.95432 0.95746 1.21778 0.96667 0.99944 0.97961 1.96699 1.48600 1.55916 1.95989 1.20994 0.93467 0.98143 0.98351 1.20964 0.98453 0.94971 0.95935 0.92675 0.94727 0.95223 0.91195 0.90540 0.87428 0.89122 0.88956 0.89296 0.89304 0.76649 0.84943 0.84897 0.84930 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.18 9.65 -34.44 -0.33 -14.51 16 8 H 0.08 2.31 7.90 -52.49 -0.41 1.90 16 9 C 0.22 5.06 4.24 -5.20 -0.02 5.04 16 10 N -0.58 -11.14 2.47 -175.06 -0.43 -11.57 16 11 C 0.14 2.04 5.24 -4.04 -0.02 2.02 16 12 C -0.15 -2.21 3.48 -90.62 -0.32 -2.52 16 13 C -0.16 -2.37 10.18 -26.69 -0.27 -2.64 16 14 C -0.19 -2.18 9.46 -26.69 -0.25 -2.43 16 15 C 0.49 9.26 6.76 -10.99 -0.07 9.19 16 16 O -0.53 -12.24 15.95 -13.43 -0.21 -12.45 16 17 C 0.13 1.84 2.88 -29.03 -0.08 1.76 16 18 H 0.13 1.47 6.16 -51.93 -0.32 1.15 16 19 O -0.54 -7.69 13.07 -54.22 -0.71 -8.40 16 20 C -0.10 -1.26 4.38 -104.62 -0.46 -1.71 16 21 C -0.09 -1.25 9.14 -39.59 -0.36 -1.61 16 22 C -0.09 -1.12 9.79 -39.56 -0.39 -1.51 16 23 C -0.08 -1.02 6.22 -39.52 -0.25 -1.27 16 24 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.93 16 25 C -0.09 -0.99 9.79 -39.55 -0.39 -1.38 16 26 C -0.08 -0.94 6.22 -39.59 -0.25 -1.19 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.03 0.88 6.90 -51.93 -0.36 0.52 16 29 H 0.03 0.67 7.01 -51.93 -0.36 0.30 16 30 H 0.07 0.78 4.46 -51.93 -0.23 0.55 16 31 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 32 H 0.11 1.98 7.53 -51.93 -0.39 1.58 16 33 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.38 4.91 7.46 45.56 0.34 5.25 16 38 H 0.13 1.76 7.24 -52.48 -0.38 1.38 16 39 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.19 6.68 -52.49 -0.35 0.84 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -32.83 356.20 -10.30 -43.12 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.57 Total: 7.48 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.56 Total: -10.80 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.34 Total: -37.94 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.92 Total: -20.85 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.83 -10.30 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095450385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.572 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds