Wall clock time and date at job start Tue Mar 31 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47302 * 269.99806 * 3 2 1 5 5 H 1.48502 * 109.47029 * 29.99816 * 3 2 1 6 6 H 1.48497 * 109.47018 * 149.99760 * 3 2 1 7 7 C 1.37875 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00480 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99701 * 269.99727 * 10 9 7 12 12 C 1.52993 * 109.46856 * 83.93620 * 11 10 9 13 13 C 1.53004 * 117.50041 * 243.46989 * 12 11 10 14 14 C 1.53001 * 117.49894 * 174.81188 * 12 11 10 15 15 C 1.34777 * 120.00388 * 89.99722 * 10 9 7 16 16 O 1.21279 * 119.99893 * 356.31410 * 15 10 9 17 17 C 1.50699 * 119.99967 * 176.30751 * 15 10 9 18 18 H 1.08994 * 109.47709 * 320.86692 * 17 15 10 19 19 O 1.42895 * 109.47145 * 200.86101 * 17 15 10 20 20 C 1.50707 * 109.46838 * 80.86543 * 17 15 10 21 21 C 1.38241 * 119.99169 * 69.95400 * 20 17 15 22 22 C 1.38221 * 120.00969 * 179.76655 * 21 20 17 23 23 C 1.38322 * 119.99000 * 0.51437 * 22 21 20 24 24 Br 1.89095 * 120.01169 * 179.72165 * 23 22 21 25 25 C 1.38328 * 119.97933 * 359.73850 * 23 22 21 26 26 C 1.38224 * 119.98853 * 0.02562 * 25 23 22 27 27 H 0.96993 * 120.00150 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46679 * 299.99975 * 9 7 2 29 29 H 1.08997 * 109.47471 * 59.99803 * 9 7 2 30 30 H 1.08997 * 109.46879 * 203.93299 * 11 10 9 31 31 H 1.09001 * 109.46863 * 323.93583 * 11 10 9 32 32 H 1.09001 * 115.55476 * 29.14372 * 12 11 10 33 33 H 1.08998 * 117.49338 * 359.97438 * 13 12 11 34 34 H 1.08997 * 117.49956 * 145.02250 * 13 12 11 35 35 H 1.09001 * 117.49967 * 214.98047 * 14 12 11 36 36 H 1.08998 * 117.49674 * 359.97438 * 14 12 11 37 37 H 0.96703 * 114.00437 * 300.00635 * 19 17 15 38 38 H 1.08004 * 119.99291 * 0.02647 * 21 20 17 39 39 H 1.08006 * 120.00155 * 180.27816 * 22 21 20 40 40 H 1.07999 * 120.00675 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.99067 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 6 4.2437 -3.2660 1.2698 12 6 2.9322 -3.8602 1.7870 13 6 2.3893 -3.3260 3.1140 14 6 2.9977 -4.7289 3.0448 15 6 4.2250 -3.2103 -1.1662 16 8 3.9602 -2.6627 -2.2154 17 6 4.8059 -4.6008 -1.1675 18 1 5.5677 -4.6772 -0.3918 19 8 5.3945 -4.8699 -2.4415 20 6 3.7124 -5.6022 -0.8979 21 6 2.7403 -5.8376 -1.8522 22 6 1.7399 -6.7595 -1.6072 23 6 1.7055 -7.4387 -0.4028 24 35 0.3327 -8.6943 -0.0639 25 6 2.6754 -7.1991 0.5539 26 6 3.6782 -6.2806 0.3061 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 4.9685 -4.0651 1.1149 31 1 4.6345 -2.5574 2.0000 32 1 2.2072 -4.1368 1.0215 33 1 2.9669 -2.5515 3.6187 34 1 1.3072 -3.2515 3.2217 35 1 2.3156 -5.5768 3.1069 36 1 3.9753 -4.8774 3.5034 37 1 4.7730 -4.8196 -3.1806 38 1 2.7649 -5.3042 -2.7910 39 1 0.9831 -6.9466 -2.3547 40 1 2.6488 -7.7289 1.4946 41 1 4.4358 -6.0937 1.0529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095450385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:38 Heat of formation + Delta-G solvation = -41.213042 kcal Electronic energy + Delta-G solvation = -26040.169240 eV Core-core repulsion = 22352.719623 eV Total energy + Delta-G solvation = -3687.449617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69002 -39.88136 -38.56087 -37.36764 -36.06740 -34.63756 -33.57823 -32.11688 -31.35783 -30.23353 -28.05751 -27.17500 -24.37282 -23.91885 -23.10185 -22.50658 -21.86603 -20.33939 -19.10662 -18.76562 -18.40729 -17.72209 -16.71618 -16.68919 -16.27745 -16.10322 -15.64169 -15.49046 -15.08472 -14.79570 -14.62416 -14.44698 -14.40132 -14.17026 -13.68565 -13.47898 -13.27961 -13.05639 -12.79807 -12.61565 -12.50694 -12.29807 -12.20265 -12.05140 -11.97590 -11.67023 -11.59309 -11.28927 -11.16561 -10.81015 -10.70397 -10.51164 -9.97957 -9.60327 -9.46881 -8.28501 -6.30778 -0.04740 0.31617 0.59936 1.31951 1.35773 1.42956 1.59771 2.15929 2.32455 2.53683 3.05607 3.07194 3.34664 3.45252 3.58788 3.68238 3.89911 3.96550 4.04513 4.14117 4.29500 4.32510 4.44056 4.55895 4.58290 4.66494 4.74204 4.89380 4.92016 4.93437 4.94683 5.11814 5.17702 5.19469 5.38740 5.40580 5.42662 5.49961 5.63557 5.75594 6.26988 6.36734 6.62427 6.70955 7.20348 7.34692 8.88218 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.003659 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.523351 B = 7650.756236 C = 8275.664874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.237 1.237 7 C -0.509 4.509 8 H 0.031 0.969 9 C 0.223 3.777 10 N -0.585 5.585 11 C 0.134 3.866 12 C -0.162 4.162 13 C -0.189 4.189 14 C -0.140 4.140 15 C 0.477 3.523 16 O -0.584 6.584 17 C 0.146 3.854 18 H 0.161 0.839 19 O -0.540 6.540 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.093 4.093 24 Br -0.050 7.050 25 C -0.087 4.087 26 C -0.076 4.076 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.388 0.612 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 -19.464 6.318 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.160 1.160 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.101 3.899 10 N -0.315 5.315 11 C 0.012 3.988 12 C -0.182 4.182 13 C -0.226 4.226 14 C -0.177 4.177 15 C 0.265 3.735 16 O -0.464 6.464 17 C 0.083 3.917 18 H 0.178 0.822 19 O -0.346 6.346 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.173 4.173 24 Br 0.036 6.964 25 C -0.107 4.107 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.238 0.762 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.272 -19.606 6.266 22.575 hybrid contribution -1.233 1.685 -1.022 2.324 sum 8.039 -17.921 5.244 20.330 Atomic orbital electron populations 1.70050 1.08124 1.27829 1.52847 1.25746 0.95504 1.02881 0.94532 0.85853 0.80045 0.79179 0.78693 1.20623 1.20576 1.15994 1.21390 0.91098 0.92917 1.49412 0.95046 1.19374 0.93210 0.80361 0.96959 1.47946 1.62886 1.14410 1.06296 1.21556 0.95500 0.97229 0.84482 1.22428 0.99195 1.05140 0.91390 1.22893 0.99767 0.98798 1.01147 1.23129 1.03623 0.92827 0.98145 1.21942 0.78525 0.89327 0.83720 1.90658 1.53985 1.68850 1.32934 1.20835 0.94924 0.86826 0.89075 0.82153 1.86539 1.40189 1.92086 1.15812 1.20275 0.96546 0.97822 0.96228 1.21037 0.94470 0.97567 1.00111 1.21135 0.98682 0.95836 0.96600 1.21991 0.97295 0.99992 0.98006 1.96702 1.48462 1.55419 1.95839 1.21347 0.92601 0.97807 0.98901 1.21304 0.98876 0.93816 0.95406 0.92690 0.96644 0.93232 0.86779 0.89007 0.91565 0.88410 0.92010 0.88383 0.85253 0.76199 0.86129 0.84691 0.82197 0.81327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.94 44.17 27.47 68.60 1.88 46.06 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -9.90 6.54 99.48 0.65 -9.24 16 7 C -0.51 -28.96 9.65 25.60 0.25 -28.72 16 8 H 0.03 2.02 7.90 -2.91 -0.02 2.00 16 9 C 0.22 10.42 4.24 85.63 0.36 10.78 16 10 N -0.59 -21.89 2.47 -826.16 -2.04 -23.93 16 11 C 0.13 3.46 5.24 86.38 0.45 3.91 16 12 C -0.16 -4.54 3.48 -10.79 -0.04 -4.58 16 13 C -0.19 -5.36 10.18 30.62 0.31 -5.05 16 14 C -0.14 -2.60 9.46 30.62 0.29 -2.31 16 15 C 0.48 18.06 6.76 87.66 0.59 18.65 16 16 O -0.58 -27.95 15.95 15.13 0.24 -27.71 16 17 C 0.15 3.86 2.88 29.10 0.08 3.94 16 18 H 0.16 3.01 6.16 -2.39 -0.01 3.00 16 19 O -0.54 -14.91 13.07 -130.83 -1.71 -16.62 16 20 C -0.11 -2.67 4.38 -19.86 -0.09 -2.76 16 21 C -0.11 -3.15 9.14 22.27 0.20 -2.94 16 22 C -0.10 -2.67 9.79 22.29 0.22 -2.45 16 23 C -0.09 -2.17 6.22 22.31 0.14 -2.03 16 24 Br -0.05 -1.05 33.70 -20.37 -0.69 -1.74 16 25 C -0.09 -1.66 9.79 22.29 0.22 -1.44 16 26 C -0.08 -1.42 6.22 22.27 0.14 -1.28 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.02 0.79 6.90 -2.38 -0.02 0.77 16 29 H 0.05 2.13 7.01 -2.39 -0.02 2.11 16 30 H 0.11 1.89 4.46 -2.39 -0.01 1.88 16 31 H 0.09 2.13 7.71 -2.39 -0.02 2.11 16 32 H 0.07 2.46 7.53 -2.39 -0.02 2.44 16 33 H 0.10 2.59 8.03 -2.39 -0.02 2.57 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.39 10.14 7.46 -74.06 -0.55 9.59 16 38 H 0.12 3.50 7.24 -2.91 -0.02 3.48 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.17 1.92 6.68 -2.91 -0.02 1.90 16 Total: -1.00 -77.40 356.20 2.05 -75.35 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.46 Total: 23.26 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 3.60 Total: -15.19 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.74 Total: -83.41 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.47 Total: -44.33 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -0.69 Total: -1.74 kcal Total: -77.40 2.05 -75.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095450385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.136 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds