Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46242 * 126.96096 * 2 1 4 4 C 1.39706 * 134.18585 * 359.97438 * 3 2 1 5 5 C 1.36630 * 119.70679 * 179.97438 * 4 3 2 6 6 C 1.38834 * 120.44469 * 0.02562 * 5 4 3 7 7 C 1.37806 * 120.74314 * 359.97438 * 6 5 4 8 8 C 1.39018 * 119.85532 * 0.02562 * 7 6 5 9 9 O 1.34722 * 133.24322 * 179.97438 * 8 7 6 10 10 C 1.34943 * 110.86717 * 180.02562 * 9 8 7 11 11 C 1.46938 * 125.13182 * 180.02562 * 10 9 8 12 12 O 1.21681 * 119.99915 * 179.97438 * 11 10 9 13 13 N 1.34783 * 120.00400 * 359.95849 * 11 10 9 14 14 C 1.40032 * 120.00109 * 175.50975 * 13 11 10 15 15 C 1.38680 * 120.10031 * 34.70037 * 14 13 11 16 16 C 1.38252 * 120.00575 * 179.97438 * 15 14 13 17 17 C 1.38302 * 120.21184 * 0.02562 * 16 15 14 18 18 C 1.38209 * 120.20173 * 0.02562 * 17 16 15 19 19 C 1.38775 * 119.99334 * 359.65912 * 18 17 16 20 20 S 1.76199 * 120.10683 * 180.33685 * 19 18 17 21 21 C 1.81407 * 102.99992 * 0.28095 * 20 19 18 22 22 C 1.50698 * 109.47014 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00106 * 359.97438 * 22 21 20 24 24 C 1.37875 * 119.99813 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00085 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00183 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46626 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47406 * 119.99300 * 26 24 22 29 29 H 1.48491 * 109.47125 * 240.00040 * 26 24 22 30 30 H 1.09002 * 109.47318 * 89.99393 * 1 2 3 31 31 H 1.09000 * 109.47130 * 209.99719 * 1 2 3 32 32 H 1.09002 * 109.47059 * 329.99986 * 1 2 3 33 33 H 1.07996 * 120.15032 * 359.97233 * 4 3 2 34 34 H 1.07997 * 119.77513 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.63179 * 179.72063 * 6 5 4 36 36 H 1.07999 * 120.07233 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99309 * 355.51372 * 13 11 10 38 38 H 1.08000 * 120.00115 * 359.97438 * 15 14 13 39 39 H 1.08000 * 119.89547 * 180.02562 * 16 15 14 40 40 H 1.07994 * 119.90101 * 180.02562 * 17 16 15 41 41 H 1.08003 * 120.00184 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.46436 * 299.99571 * 21 20 19 43 43 H 1.09001 * 109.47249 * 59.99519 * 21 20 19 44 44 H 0.97001 * 119.99476 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1685 0.0000 4 6 2.1713 2.5489 -0.0004 5 6 3.2397 3.4006 0.0002 6 6 4.5359 2.9032 0.0008 7 6 4.7692 1.5450 0.0013 8 6 3.6981 0.6588 0.0006 9 8 3.6125 -0.6857 0.0003 10 6 2.3237 -1.0853 -0.0009 11 6 1.8719 -2.4835 -0.0010 12 8 0.6821 -2.7385 -0.0018 13 7 2.7754 -3.4837 -0.0006 14 6 2.3475 -4.8137 0.0943 15 6 1.1581 -5.2059 -0.5013 16 6 0.7378 -6.5196 -0.4069 17 6 1.4999 -7.4463 0.2810 18 6 2.6862 -7.0647 0.8788 19 6 3.1193 -5.7497 0.7837 20 16 4.6356 -5.2620 1.5371 21 6 5.2352 -6.8033 2.2825 22 6 6.5480 -6.5479 2.9771 23 1 6.9787 -5.5576 2.9704 24 6 7.1991 -7.5785 3.6211 25 7 6.6743 -8.7844 3.6296 26 14 8.8261 -7.2619 4.4827 27 1 9.1979 -5.8325 4.3282 28 1 8.6933 -7.5860 5.9258 29 1 9.8804 -8.1153 3.8786 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.1651 2.9412 -0.0014 34 1 3.0748 4.4679 0.0003 35 1 5.3707 3.5883 -0.0032 36 1 5.7819 1.1699 0.0013 37 1 3.7219 -3.2822 -0.0659 38 1 0.5601 -4.4850 -1.0390 39 1 -0.1885 -6.8231 -0.8717 40 1 1.1670 -8.4713 0.3513 41 1 3.2785 -7.7910 1.4155 42 1 4.5050 -7.1648 3.0065 43 1 5.3764 -7.5527 1.5037 44 1 7.1323 -9.5094 4.0831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = 15.103159 kcal Electronic energy + Delta-G solvation = -28757.226231 eV Core-core repulsion = 24731.832074 eV Total energy + Delta-G solvation = -4025.394156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.79410 -40.35187 -38.34209 -38.01159 -35.00358 -34.03324 -33.29165 -30.90834 -30.83775 -30.52971 -29.40166 -28.63197 -27.65231 -24.67170 -23.47234 -23.02785 -22.76507 -22.09227 -20.71986 -20.29080 -18.59450 -17.77793 -17.30496 -16.82142 -16.66938 -16.29401 -16.27909 -15.44378 -15.19057 -14.99945 -14.63201 -14.43354 -14.20483 -13.96412 -13.81809 -13.41409 -13.33139 -13.06489 -12.99906 -12.98927 -12.57452 -12.55686 -12.41623 -12.25970 -12.10943 -11.79424 -11.32525 -11.22211 -10.99612 -10.78361 -10.46271 -10.20376 -10.16462 -9.93360 -9.71127 -9.28317 -9.17327 -8.98250 -8.67972 -8.51676 -8.11151 -6.65621 -6.30814 -4.36573 0.25065 1.02122 1.34212 1.60617 1.73559 2.21235 2.34347 2.89865 3.02585 3.18746 3.26404 3.31403 3.36356 3.56216 4.01618 4.12231 4.24172 4.26349 4.51247 4.63755 4.74020 4.89725 5.04836 5.06976 5.12573 5.21097 5.28071 5.33453 5.46459 5.49949 5.65829 5.67472 5.72814 5.75202 5.86130 5.97836 6.07953 6.09665 6.17084 6.21226 6.41114 6.46377 6.62184 6.76196 6.80062 6.90450 6.93607 7.19584 7.32807 7.62375 7.84724 7.88022 8.64714 9.27757 10.80372 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.002688 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.277702 B =10416.049769 C =13400.568426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.058 4.058 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.110 4.110 8 C 0.076 3.924 9 O -0.180 6.180 10 C -0.032 4.032 11 C 0.602 3.398 12 O -0.500 6.500 13 N -0.647 5.647 14 C 0.140 3.860 15 C -0.105 4.105 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.087 4.087 20 S -0.163 6.163 21 C 0.075 3.925 22 C -0.519 4.519 23 H 0.069 0.931 24 C 0.068 3.932 25 N -0.888 5.888 26 Si 0.908 3.092 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.419 0.581 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 19.347 -9.884 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.159 4.159 6 C -0.101 4.101 7 C -0.128 4.128 8 C 0.028 3.972 9 O -0.081 6.081 10 C -0.082 4.082 11 C 0.389 3.611 12 O -0.377 6.377 13 N -0.291 5.291 14 C 0.040 3.960 15 C -0.126 4.126 16 C -0.147 4.147 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.202 4.202 20 S 0.084 5.916 21 C -0.072 4.072 22 C -0.558 4.558 23 H 0.087 0.913 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.735 3.265 27 H -0.194 1.194 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.257 0.743 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.312 19.913 -9.701 24.433 hybrid contribution 0.822 -1.100 0.504 1.463 sum -9.490 18.813 -9.197 22.991 Atomic orbital electron populations 1.20466 0.87331 1.04067 1.03153 1.21386 0.97024 0.89382 1.00132 1.19805 0.92312 0.94336 1.07949 1.20344 0.99812 0.90172 0.97331 1.20800 0.92242 1.00068 1.02800 1.21027 0.97562 0.93730 0.97800 1.20068 0.97050 0.91161 1.04539 1.19741 0.95564 0.81015 1.00911 1.84060 1.26790 1.20998 1.76277 1.21549 0.81368 0.94284 1.11011 1.16610 0.85710 0.81676 0.77087 1.90829 1.15143 1.82088 1.49673 1.43287 1.11076 1.04111 1.70619 1.17117 0.96313 0.82253 1.00358 1.21091 0.95628 0.96548 0.99321 1.20938 1.00099 0.92730 1.00965 1.21076 0.94574 0.99474 0.97881 1.21256 0.97470 0.94529 1.01009 1.21926 1.00759 0.96382 1.01161 1.85231 1.16627 1.25667 1.64082 1.21393 0.99541 0.88279 0.97940 1.20643 1.03946 0.96580 1.34678 0.91295 1.24951 0.98299 0.94628 0.95755 1.69953 1.39203 1.00724 1.42711 0.86268 0.82406 0.78704 0.79149 1.19367 1.20609 1.20608 0.90372 0.88844 0.91232 0.85261 0.85107 0.84490 0.84457 0.74312 0.84401 0.85954 0.85942 0.84565 0.93648 0.93660 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.81 36.01 0.35 -0.59 16 2 C -0.08 -0.94 6.39 -102.27 -0.65 -1.60 16 3 C -0.14 -1.65 6.37 -105.19 -0.67 -2.32 16 4 C -0.06 -0.51 10.06 -39.61 -0.40 -0.91 16 5 C -0.14 -1.02 9.98 -39.94 -0.40 -1.42 16 6 C -0.08 -0.62 10.01 -39.52 -0.40 -1.01 16 7 C -0.11 -1.06 10.07 -39.45 -0.40 -1.45 16 8 C 0.08 0.94 7.41 -38.35 -0.28 0.65 16 9 O -0.18 -2.51 10.28 2.77 0.03 -2.48 16 10 C -0.03 -0.46 7.06 -36.93 -0.26 -0.72 16 11 C 0.60 9.22 7.64 -12.73 -0.10 9.12 16 12 O -0.50 -8.08 12.03 5.21 0.06 -8.01 16 13 N -0.65 -10.30 5.02 -10.82 -0.05 -10.35 16 14 C 0.14 2.42 6.32 -83.46 -0.53 1.89 16 15 C -0.10 -1.64 8.70 -39.41 -0.34 -1.99 16 16 C -0.13 -1.79 10.04 -39.55 -0.40 -2.19 16 17 C -0.11 -1.67 10.04 -39.57 -0.40 -2.06 16 18 C -0.12 -2.14 9.36 -39.39 -0.37 -2.51 16 19 C -0.09 -1.66 6.12 -38.90 -0.24 -1.90 16 20 S -0.16 -3.46 20.72 -107.50 -2.23 -5.69 16 21 C 0.08 1.88 4.09 36.00 0.15 2.02 16 22 C -0.52 -14.10 9.13 -34.44 -0.31 -14.41 16 23 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 24 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 25 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 26 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.08 6.38 -51.93 -0.33 0.75 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.42 6.43 7.68 -40.82 -0.31 6.12 16 38 H 0.14 2.07 6.19 -52.49 -0.32 1.75 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.14 2.63 5.88 -52.48 -0.31 2.32 16 42 H 0.05 1.18 7.74 -51.92 -0.40 0.78 16 43 H 0.05 1.17 7.76 -51.92 -0.40 0.77 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -30.41 388.52 -11.36 -41.77 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.01 Total: 7.03 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -5.74 Total: -19.62 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.68 Total: -34.63 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.23 Total: -5.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.41 -11.36 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.876 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds