Wall clock time and date at job start Tue Mar 31 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47075 * 269.99910 * 3 2 1 5 5 H 1.48496 * 109.46817 * 29.99881 * 3 2 1 6 6 H 1.48499 * 109.47284 * 149.99716 * 3 2 1 7 7 C 1.38697 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99987 * 359.97438 * 7 2 1 9 9 O 1.34789 * 119.99884 * 180.02562 * 7 2 1 10 10 C 1.35594 * 116.99884 * 185.06020 * 9 7 2 11 11 C 1.39153 * 119.90057 * 354.35420 * 10 9 7 12 12 C 1.37621 * 120.09717 * 179.97438 * 11 10 9 13 13 C 1.39981 * 119.90067 * 0.02562 * 12 11 10 14 14 C 1.47053 * 120.09625 * 179.97438 * 13 12 11 15 15 C 1.34786 * 119.99769 * 136.69002 * 14 13 12 16 16 C 1.46761 * 119.99807 * 348.66998 * 15 14 13 17 17 O 1.22053 * 120.00057 * 353.21569 * 16 15 14 18 18 N 1.33904 * 119.99579 * 173.21221 * 16 15 14 19 19 C 1.32994 * 119.99828 * 180.02562 * 18 16 15 20 20 N 1.35244 * 126.28970 * 179.97438 * 19 18 16 21 21 H 0.96998 * 126.21753 * 0.02618 * 20 19 18 22 22 N 1.40118 * 107.55533 * 180.02562 * 20 19 18 23 23 C 1.30678 * 108.29486 * 0.02562 * 22 20 19 24 24 C 1.47234 * 125.68216 * 179.97438 * 23 22 20 25 25 C 1.36205 * 125.95332 * 0.04334 * 24 23 22 26 26 C 1.40790 * 106.72801 * 180.02562 * 25 24 23 27 27 C 1.34822 * 107.07043 * 0.02562 * 26 25 24 28 28 O 1.34266 * 108.70855 * 0.02562 * 27 26 25 29 29 N 1.36200 * 126.28554 * 0.33397 * 19 18 16 30 30 H 0.97003 * 125.96189 * 359.94836 * 29 19 18 31 31 C 1.39974 * 119.80219 * 0.25547 * 13 12 11 32 32 C 1.37624 * 119.90351 * 359.49123 * 31 13 12 33 33 H 0.96993 * 120.00114 * 0.02562 * 1 2 3 34 34 H 1.07995 * 119.95023 * 0.02562 * 11 10 9 35 35 H 1.08004 * 120.05193 * 180.02562 * 12 11 10 36 36 H 1.08003 * 120.00487 * 316.69508 * 14 13 12 37 37 H 1.07995 * 120.00064 * 168.66393 * 15 14 13 38 38 H 1.08000 * 126.63900 * 359.97438 * 25 24 23 39 39 H 1.07998 * 126.46909 * 180.02562 * 26 25 24 40 40 H 1.07996 * 125.64732 * 179.97438 * 27 26 25 41 41 H 1.08006 * 120.04385 * 179.73981 * 31 13 12 42 42 H 1.07995 * 119.95390 * 180.27787 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0087 -1.2011 -0.0005 8 1 1.4688 -2.1364 -0.0005 9 8 3.3566 -1.2011 0.0000 10 6 3.9723 -2.4044 -0.1071 11 6 3.2176 -3.5734 -0.0926 12 6 3.8383 -4.7969 -0.2016 13 6 5.2308 -4.8643 -0.3267 14 6 5.8985 -6.1693 -0.4429 15 6 6.8877 -6.3425 -1.3418 16 6 7.1332 -5.3228 -2.3683 17 8 6.3674 -4.3799 -2.4873 18 7 8.1975 -5.4269 -3.1743 19 6 8.4203 -4.5025 -4.1042 20 7 9.4496 -4.4811 -4.9812 21 1 10.1603 -5.1380 -5.0468 22 7 9.3026 -3.3377 -5.7776 23 6 8.2283 -2.7029 -5.3897 24 6 7.7154 -1.4497 -5.9677 25 6 8.2767 -0.7548 -6.9960 26 6 7.4609 0.3711 -7.2172 27 6 6.4529 0.3111 -6.3238 28 8 6.6101 -0.7890 -5.5703 29 7 7.6574 -3.3999 -4.3438 30 1 6.8519 -3.1494 -3.8648 31 6 5.9864 -3.6860 -0.3349 32 6 5.3569 -2.4666 -0.2307 33 1 -0.4850 0.8400 -0.0004 34 1 2.1433 -3.5205 0.0035 35 1 3.2518 -5.7038 -0.1906 36 1 5.5962 -6.9891 0.1920 37 1 7.4998 -7.2316 -1.3067 38 1 9.1743 -1.0164 -7.5366 39 1 7.6136 1.1382 -7.9619 40 1 5.6521 1.0295 -6.2293 41 1 7.0615 -3.7336 -0.4270 42 1 5.9387 -1.5568 -0.2414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096034951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:50 Heat of formation + Delta-G solvation = 122.269530 kcal Electronic energy + Delta-G solvation = -31480.197187 eV Core-core repulsion = 27010.875561 eV Total energy + Delta-G solvation = -4469.321626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.17439 -42.49312 -39.62537 -38.78324 -36.65998 -34.53272 -34.12036 -33.51747 -32.97407 -32.28747 -31.30402 -30.20642 -29.36790 -28.18161 -25.48252 -24.33137 -24.13358 -22.59578 -22.06186 -21.89113 -21.06911 -20.77746 -19.13194 -18.45483 -17.80594 -17.65806 -17.19133 -16.87851 -16.83595 -16.48073 -16.08620 -15.67489 -15.36142 -14.79754 -14.43014 -14.04691 -13.80194 -13.64889 -13.53845 -13.39088 -13.33444 -13.08878 -13.03574 -12.58430 -12.29048 -12.20464 -12.08852 -11.70999 -11.51268 -11.38624 -11.02541 -10.78980 -10.66247 -10.46520 -10.43464 -10.14199 -9.46977 -9.29615 -9.20243 -9.14499 -8.75249 -8.35982 -7.98485 -6.95957 -6.43042 -4.07098 0.39414 0.86072 1.52701 1.73754 1.86537 2.03912 2.33078 2.36381 2.72355 2.81605 3.20289 3.22801 3.38712 3.96735 3.99293 4.22073 4.29861 4.36953 4.47403 4.62692 4.63720 4.89153 4.93230 5.12680 5.24180 5.33136 5.37173 5.47130 5.51622 5.69855 5.74819 5.80391 5.91490 6.18149 6.32515 6.36202 6.48152 6.49323 6.53825 6.68081 6.80324 6.92950 7.06368 7.19544 7.33873 7.40185 7.50469 7.67108 7.84175 8.05931 8.57847 8.92297 9.57052 10.64554 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.003526 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.727088 B = 7938.061439 C =11458.292920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.108 0.892 9 O -0.215 6.215 10 C 0.175 3.825 11 C -0.236 4.236 12 C -0.046 4.046 13 C -0.171 4.171 14 C 0.005 3.995 15 C -0.216 4.216 16 C 0.525 3.475 17 O -0.553 6.553 18 N -0.652 5.652 19 C 0.618 3.382 20 N -0.490 5.490 21 H 0.468 0.532 22 N -0.258 5.258 23 C 0.366 3.634 24 C 0.011 3.989 25 C -0.119 4.119 26 C -0.223 4.223 27 C 0.011 3.989 28 O -0.159 6.159 29 N -0.623 5.623 30 H 0.459 0.541 31 C 0.006 3.994 32 C -0.204 4.204 33 H 0.279 0.721 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.217 0.783 41 H 0.100 0.900 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.585 -5.020 -13.508 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.462 4.462 8 H 0.125 0.875 9 O -0.120 6.120 10 C 0.122 3.878 11 C -0.255 4.255 12 C -0.064 4.064 13 C -0.172 4.172 14 C -0.014 4.014 15 C -0.237 4.237 16 C 0.316 3.684 17 O -0.433 6.433 18 N -0.419 5.419 19 C 0.258 3.742 20 N -0.220 5.220 21 H 0.319 0.681 22 N -0.084 5.084 23 C 0.089 3.911 24 C -0.042 4.042 25 C -0.142 4.142 26 C -0.242 4.242 27 C -0.059 4.059 28 O -0.053 6.053 29 N -0.268 5.268 30 H 0.315 0.685 31 C -0.013 4.013 32 C -0.224 4.224 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.182 0.818 39 H 0.179 0.821 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.006 -4.939 -13.701 23.945 hybrid contribution -0.796 0.921 0.393 1.279 sum 18.210 -4.017 -13.308 22.910 Atomic orbital electron populations 1.69630 1.05580 1.28483 1.47906 1.24475 0.95015 0.98782 0.95730 0.86191 0.80389 0.81485 0.78905 1.19936 1.20749 1.18360 1.20820 0.76941 0.96680 1.51805 0.87509 1.83509 1.22628 1.26207 1.79617 1.19230 0.91552 0.85261 0.91755 1.21068 1.00881 0.91794 1.11791 1.20810 0.92951 0.96694 0.95949 1.18380 0.93304 0.92075 1.13415 1.22351 0.90979 0.95160 0.92952 1.22326 1.02674 1.00767 0.97934 1.19494 0.80609 0.84925 0.83402 1.90706 1.48898 1.32989 1.70671 1.70005 1.30349 1.27036 1.14509 1.20610 0.83250 0.82860 0.87527 1.45462 1.24972 1.22870 1.28731 0.68120 1.77580 1.16235 0.97757 1.16791 1.20469 0.90684 0.91484 0.88473 1.18169 0.91728 0.93573 1.00695 1.21927 1.01337 0.94376 0.96543 1.21884 0.96987 1.01387 1.03983 1.24560 1.01275 0.88253 0.91813 1.84173 1.38008 1.32062 1.51077 1.45366 1.29124 1.21141 1.31146 0.68538 1.20430 0.97433 0.90897 0.92490 1.19979 0.91776 0.97572 1.13024 0.91043 0.85076 0.87307 0.85806 0.85385 0.81802 0.82086 0.76682 0.88176 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.96 55.48 0.77 -24.65 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 21.70 28.62 -169.99 -4.86 16.84 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.06 9.94 30.90 0.31 -10.75 16 8 H 0.11 3.12 5.42 -52.49 -0.28 2.84 16 9 O -0.22 -5.82 8.57 0.64 0.01 -5.81 16 10 C 0.17 4.23 6.66 -38.90 -0.26 3.97 16 11 C -0.24 -5.35 9.14 -39.47 -0.36 -5.71 16 12 C -0.05 -0.89 9.78 -39.15 -0.38 -1.27 16 13 C -0.17 -3.14 4.54 -105.02 -0.48 -3.62 16 14 C 0.01 0.08 9.80 -37.23 -0.36 -0.29 16 15 C -0.22 -3.11 10.01 -37.36 -0.37 -3.49 16 16 C 0.52 8.58 6.70 -13.21 -0.09 8.49 16 17 O -0.55 -10.26 9.54 4.87 0.05 -10.21 16 18 N -0.65 -9.40 10.52 -14.27 -0.15 -9.55 16 19 C 0.62 7.97 8.78 -321.65 -2.83 5.15 16 20 N -0.49 -4.70 7.39 29.91 0.22 -4.47 16 21 H 0.47 2.90 8.96 -182.59 -1.64 1.26 16 22 N -0.26 -2.65 12.62 32.45 0.41 -2.24 16 23 C 0.37 4.23 8.07 -154.08 -1.24 2.99 16 24 C 0.01 0.11 7.24 -36.66 -0.27 -0.15 16 25 C -0.12 -0.98 10.80 -39.35 -0.43 -1.40 16 26 C -0.22 -1.57 10.88 -39.83 -0.43 -2.00 16 27 C 0.01 0.09 12.08 29.52 0.36 0.45 16 28 O -0.16 -1.84 10.67 4.53 0.05 -1.80 16 29 N -0.62 -8.36 5.75 -11.51 -0.07 -8.42 16 30 H 0.46 7.07 6.28 -40.82 -0.26 6.81 16 31 C 0.01 0.12 6.58 -39.16 -0.26 -0.14 16 32 C -0.20 -4.39 9.97 -39.47 -0.39 -4.79 16 33 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.13 3.09 5.62 -52.49 -0.29 2.79 16 35 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.10 1.81 7.02 -52.48 -0.37 1.45 16 42 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -33.97 373.46 -10.47 -44.43 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.94 Total: 11.14 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -7.58 Total: -10.89 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 1.19 Total: -49.33 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.10 Total: -17.82 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.97 -10.47 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096034951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.703 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds