Wall clock time and date at job start Tue Mar 31 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35549 * 117.00316 * 2 1 4 4 C 1.38918 * 120.46322 * 180.26320 * 3 2 1 5 5 C 1.39238 * 118.28219 * 180.26066 * 4 3 2 6 6 N 1.38609 * 120.49704 * 179.76162 * 5 4 3 7 7 C 1.46860 * 111.00014 * 179.71753 * 6 5 4 8 8 C 1.53114 * 109.45697 * 186.31854 * 7 6 5 9 9 C 1.52657 * 109.35220 * 301.60292 * 8 7 6 10 10 C 1.53356 * 110.30296 * 294.18818 * 9 8 7 11 11 N 1.46656 * 105.02636 * 241.25387 * 10 9 8 12 12 C 1.36839 * 124.94353 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00343 * 161.63619 * 12 11 10 14 14 C 1.38801 * 119.99624 * 341.63360 * 12 11 10 15 15 N 1.31600 * 119.99422 * 156.92374 * 14 12 11 16 16 Si 1.86788 * 120.00240 * 336.92686 * 14 12 11 17 17 H 1.48497 * 109.47344 * 84.90609 * 16 14 12 18 18 H 1.48499 * 109.47334 * 204.90916 * 16 14 12 19 19 H 1.48507 * 109.47302 * 324.90998 * 16 14 12 20 20 C 1.39250 * 110.11678 * 359.93622 * 11 10 9 21 21 C 1.39818 * 129.33029 * 180.02562 * 20 11 10 22 22 C 1.37772 * 120.28879 * 179.97438 * 21 20 11 23 23 C 1.38346 * 120.24211 * 359.97438 * 22 21 20 24 24 C 1.38271 * 119.86247 * 359.97438 * 23 22 21 25 25 C 1.38114 * 120.20112 * 0.08106 * 24 23 22 26 26 C 1.52630 * 110.32495 * 56.36362 * 9 8 7 27 27 C 1.46866 * 110.99607 * 303.98146 * 6 5 4 28 28 N 1.33149 * 119.00696 * 359.47582 * 5 4 3 29 29 C 1.31728 * 120.83656 * 0.25905 * 28 5 4 30 30 N 1.31775 * 121.88825 * 0.02562 * 29 28 5 31 31 H 1.09003 * 109.46633 * 60.00012 * 1 2 3 32 32 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46987 * 300.00142 * 1 2 3 34 34 H 1.08002 * 120.86481 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47534 * 66.32619 * 7 6 5 36 36 H 1.08994 * 109.47529 * 306.31529 * 7 6 5 37 37 H 1.08997 * 109.49176 * 181.63552 * 8 7 6 38 38 H 1.09001 * 109.49187 * 61.56203 * 8 7 6 39 39 H 1.09003 * 110.33324 * 0.14109 * 10 9 8 40 40 H 1.09003 * 110.33479 * 122.36844 * 10 9 8 41 41 H 0.97001 * 119.99493 * 180.02562 * 15 14 12 42 42 H 1.08001 * 119.85310 * 359.91444 * 21 20 11 43 43 H 1.08001 * 119.88141 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.07267 * 180.02562 * 23 22 21 45 45 H 1.07994 * 119.89590 * 180.02562 * 24 23 22 46 46 H 1.08991 * 109.48941 * 63.62930 * 26 9 8 47 47 H 1.09002 * 109.48451 * 183.69872 * 26 9 8 48 48 H 1.08992 * 109.47336 * 293.70160 * 27 6 5 49 49 H 1.08997 * 109.47018 * 53.70074 * 27 6 5 50 50 H 1.07997 * 119.05795 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 6 3.4311 1.2916 -0.0055 5 6 4.0156 2.5553 0.0003 6 7 5.3950 2.6923 0.0002 7 6 5.7831 4.1087 0.0001 8 6 7.3018 4.2213 -0.1590 9 6 7.9868 3.4705 0.9801 10 6 7.6936 4.1549 2.3208 11 7 9.0054 4.5632 2.8341 12 6 9.2150 5.2164 4.0181 13 1 10.1978 5.2206 4.4659 14 6 8.1645 5.8735 4.6436 15 7 8.2099 6.1029 5.9386 16 14 6.6866 6.4321 3.6472 17 1 5.7231 5.3095 3.5189 18 1 6.0290 7.5728 4.3340 19 1 7.1327 6.8582 2.2963 20 6 10.0066 4.1886 1.9417 21 6 11.3891 4.3770 2.0311 22 6 12.2183 3.9252 1.0278 23 6 11.6891 3.2808 -0.0761 24 6 10.3232 3.0892 -0.1723 25 6 9.4860 3.5406 0.8292 26 6 7.5209 2.0174 1.0129 27 6 5.9950 1.9762 1.1333 28 7 3.2298 3.6302 0.0002 29 6 1.9183 3.5077 -0.0002 30 7 1.3291 2.3290 0.0000 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.0401 0.3996 -0.0094 35 1 5.4813 4.5683 0.9413 36 1 5.2922 4.6200 -0.8279 37 1 7.5937 5.2711 -0.1299 38 1 7.6009 3.7865 -1.1127 39 1 7.0579 5.0274 2.1696 40 1 7.2194 3.4543 3.0081 41 1 7.4756 6.5618 6.3758 42 1 11.8088 4.8798 2.8898 43 1 13.2852 4.0746 1.1034 44 1 12.3417 2.9273 -0.8608 45 1 9.9096 2.5858 -1.0336 46 1 7.8269 1.5166 0.0945 47 1 7.9671 1.5117 1.8693 48 1 5.6912 2.4518 2.0657 49 1 5.6581 0.9396 1.1276 50 1 1.3083 4.3989 0.0002 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096078849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:25 Heat of formation + Delta-G solvation = 84.206467 kcal Electronic energy + Delta-G solvation = -33769.224236 eV Core-core repulsion = 29569.918260 eV Total energy + Delta-G solvation = -4199.305975 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.61611 -40.62551 -39.06435 -37.91530 -35.95373 -34.51008 -32.66993 -32.28227 -31.40887 -30.89044 -29.37725 -28.84793 -27.71876 -26.83118 -24.85615 -24.58188 -23.48376 -22.85026 -22.41837 -21.12732 -20.33599 -19.04592 -18.69566 -18.01083 -17.32781 -16.47194 -16.31964 -15.92791 -15.68947 -15.55650 -15.36214 -15.13653 -14.98214 -14.86733 -14.33517 -14.07424 -13.90970 -13.78139 -13.33839 -13.11560 -12.82110 -12.70974 -12.42046 -12.31349 -12.27633 -12.18991 -11.93592 -11.78525 -11.41500 -11.27140 -11.15311 -11.01610 -10.95559 -10.62795 -10.50691 -10.40953 -10.18496 -10.02146 -9.76223 -9.60282 -9.47661 -9.41495 -8.73902 -8.58071 -8.00512 -6.78668 -6.57751 -3.82843 0.79869 0.99998 2.24902 2.44338 2.57809 2.96824 3.13440 3.14084 3.27727 3.65200 3.89121 3.99463 4.15261 4.30897 4.52059 4.70983 4.77294 4.82021 4.89168 4.94639 4.96677 5.01668 5.12770 5.20854 5.22979 5.27460 5.33807 5.37672 5.45861 5.56063 5.69676 5.74003 5.75163 5.79898 5.86258 5.91107 6.00298 6.11883 6.15986 6.28237 6.33237 6.39643 6.50472 6.54681 6.60123 6.76006 6.86723 6.90051 7.00503 7.14033 7.35606 7.41145 7.52757 7.74486 7.94715 8.02015 8.35457 9.05079 9.43099 10.52505 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.003207 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.317125 B = 8728.351782 C =10378.079558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.374 3.626 4 C -0.266 4.266 5 C 0.388 3.612 6 N -0.466 5.466 7 C 0.062 3.938 8 C -0.102 4.102 9 C -0.012 4.012 10 C 0.100 3.900 11 N -0.460 5.460 12 C -0.300 4.300 13 H 0.112 0.888 14 C 0.050 3.950 15 N -0.861 5.861 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.204 3.796 21 C -0.199 4.199 22 C -0.064 4.064 23 C -0.235 4.235 24 C -0.041 4.041 25 C -0.208 4.208 26 C -0.096 4.096 27 C 0.056 3.944 28 N -0.575 5.575 29 C 0.359 3.641 30 N -0.599 5.599 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.276 0.724 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 -9.335 -12.546 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.189 3.811 4 C -0.292 4.292 5 C 0.150 3.850 6 N -0.182 5.182 7 C -0.064 4.064 8 C -0.140 4.140 9 C -0.013 4.013 10 C -0.024 4.024 11 N -0.148 5.148 12 C -0.427 4.427 13 H 0.130 0.870 14 C -0.155 4.155 15 N -0.496 5.496 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.191 1.191 20 C 0.088 3.912 21 C -0.223 4.223 22 C -0.083 4.083 23 C -0.257 4.257 24 C -0.060 4.060 25 C -0.214 4.214 26 C -0.134 4.134 27 C -0.070 4.070 28 N -0.299 5.299 29 C 0.069 3.931 30 N -0.332 5.332 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.107 0.893 50 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.393 -8.848 -12.408 19.027 hybrid contribution -0.939 0.209 0.316 1.012 sum -12.331 -8.639 -12.092 19.311 Atomic orbital electron populations 1.22932 0.76673 1.03221 1.02768 1.86234 1.23353 1.24127 1.86933 1.19780 0.89036 0.84892 0.87345 1.21181 0.92742 0.99286 1.15979 1.19883 0.90115 0.88248 0.86779 1.58791 1.02522 1.15830 1.41096 1.22200 0.96379 0.84923 1.02937 1.21670 0.92324 1.01209 0.98776 1.19540 0.92984 0.94684 0.94057 1.22326 0.87913 0.98054 0.94060 1.42959 1.02142 1.52289 1.17404 1.18995 0.99537 1.29819 0.94307 0.87034 1.25087 0.98058 0.97086 0.95313 1.69829 1.33238 1.38898 1.07607 0.86995 0.82459 0.78857 0.80510 1.20401 1.21566 1.19117 1.18390 0.90116 0.94530 0.88121 1.20116 0.90872 1.09759 1.01583 1.20531 0.97925 0.96396 0.93455 1.20330 0.94396 1.10423 1.00510 1.19934 0.92672 0.97331 0.96062 1.19255 0.92664 1.11437 0.98030 1.21603 0.91970 0.96184 1.03638 1.22470 0.96259 0.98611 0.89612 1.68474 1.06744 1.32949 1.21783 1.24486 0.87723 0.93789 0.87081 1.68110 1.41608 0.99096 1.24338 0.92027 0.88347 0.91995 0.82982 0.92831 0.89093 0.90506 0.90375 0.92554 0.91563 0.91342 0.87324 0.87664 0.87894 0.88026 0.90155 0.90067 0.92832 0.89333 0.78431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.29 10.49 -18.34 -0.19 -3.49 16 3 C 0.37 4.59 7.52 -16.79 -0.13 4.47 16 4 C -0.27 -3.28 9.22 -38.96 -0.36 -3.64 16 5 C 0.39 5.30 6.40 -154.72 -0.99 4.31 16 6 N -0.47 -6.38 4.67 -173.00 -0.81 -7.19 16 7 C 0.06 0.92 4.48 -3.79 -0.02 0.90 16 8 C -0.10 -1.57 4.73 -26.85 -0.13 -1.70 16 9 C -0.01 -0.21 0.69 -155.77 -0.11 -0.31 16 10 C 0.10 2.07 3.68 -3.77 -0.01 2.05 16 11 N -0.46 -10.90 3.00 -112.66 -0.34 -11.24 16 12 C -0.30 -8.02 10.20 -15.11 -0.15 -8.17 16 13 H 0.11 3.16 7.61 -52.49 -0.40 2.76 16 14 C 0.05 1.35 5.43 -17.44 -0.09 1.26 16 15 N -0.86 -24.15 13.97 55.49 0.78 -23.38 16 16 Si 0.88 20.76 24.35 -169.99 -4.14 16.62 16 17 H -0.28 -6.26 6.84 56.52 0.39 -5.87 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.20 6.86 56.52 0.39 -5.81 16 20 C 0.20 4.45 6.64 -83.66 -0.56 3.90 16 21 C -0.20 -4.11 9.75 -39.16 -0.38 -4.49 16 22 C -0.06 -1.13 10.02 -39.71 -0.40 -1.53 16 23 C -0.23 -3.90 10.06 -39.53 -0.40 -4.30 16 24 C -0.04 -0.69 10.03 -39.61 -0.40 -1.08 16 25 C -0.21 -3.88 4.87 -104.36 -0.51 -4.39 16 26 C -0.10 -1.36 4.74 -26.86 -0.13 -1.49 16 27 C 0.06 0.74 5.07 -3.78 -0.02 0.72 16 28 N -0.57 -7.93 8.84 -13.87 -0.12 -8.05 16 29 C 0.36 4.19 12.28 -92.23 -1.13 3.06 16 30 N -0.60 -7.22 9.38 -14.72 -0.14 -7.36 16 31 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.15 1.63 7.23 -52.49 -0.38 1.26 16 35 H 0.05 0.91 6.89 -51.93 -0.36 0.55 16 36 H 0.09 1.28 7.71 -51.93 -0.40 0.88 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.23 1.98 -51.93 -0.10 1.12 16 40 H 0.07 1.38 6.77 -51.93 -0.35 1.03 16 41 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.11 2.28 7.63 -52.49 -0.40 1.88 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.05 0.80 6.91 -51.93 -0.36 0.44 16 49 H 0.09 0.97 6.74 -51.93 -0.35 0.62 16 50 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -29.64 388.68 -10.87 -40.52 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.91 Total: 6.82 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -4.86 Total: -9.11 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.63 Total: -57.21 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.19 Total: -3.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.14 Total: 16.62 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.64 -10.87 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096078849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.722 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds