Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39676 * 126.06610 * 2 1 4 4 C 1.38403 * 105.35582 * 180.02562 * 3 2 1 5 5 C 1.47169 * 126.88077 * 179.97438 * 4 3 2 6 6 O 1.21629 * 120.00030 * 332.15557 * 5 4 3 7 7 N 1.34776 * 119.99647 * 152.16218 * 5 4 3 8 8 C 1.46930 * 120.61220 * 351.60726 * 7 5 4 9 9 C 1.53259 * 108.73801 * 234.07311 * 8 7 5 10 10 C 1.52619 * 109.40433 * 306.05530 * 9 8 7 11 11 C 1.53394 * 110.25782 * 297.91710 * 10 9 8 12 12 N 1.46637 * 105.04522 * 241.11200 * 11 10 9 13 13 C 1.36848 * 124.93890 * 180.24456 * 12 11 10 14 14 H 1.07996 * 120.00418 * 185.98789 * 13 12 11 15 15 C 1.38795 * 119.99777 * 5.97820 * 13 12 11 16 16 N 1.31598 * 120.00148 * 352.12792 * 15 13 12 17 17 Si 1.86806 * 119.99965 * 172.11973 * 15 13 12 18 18 H 1.48498 * 109.46911 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46923 * 120.00481 * 17 15 13 20 20 H 1.48497 * 109.47431 * 240.00342 * 17 15 13 21 21 C 1.39235 * 110.12723 * 0.33357 * 12 11 10 22 22 C 1.39822 * 129.33842 * 179.88733 * 21 12 11 23 23 C 1.37772 * 120.28665 * 179.69800 * 22 21 12 24 24 C 1.38350 * 120.24493 * 359.97050 * 23 22 21 25 25 C 1.38263 * 119.85858 * 0.02562 * 24 23 22 26 26 C 1.38112 * 120.20023 * 0.03351 * 25 24 23 27 27 C 1.52602 * 110.63446 * 60.17251 * 10 9 8 28 28 C 1.46937 * 120.60572 * 171.58658 * 7 5 4 29 29 N 1.36591 * 106.23479 * 0.26468 * 4 3 2 30 30 H 0.97001 * 125.19243 * 179.74299 * 29 4 3 31 31 N 1.28448 * 109.61663 * 359.54759 * 29 4 3 32 32 H 1.09004 * 109.47001 * 90.00165 * 1 2 3 33 33 H 1.08998 * 109.47041 * 210.00269 * 1 2 3 34 34 H 1.08995 * 109.47143 * 330.00500 * 1 2 3 35 35 H 1.08001 * 127.32508 * 0.02562 * 3 2 1 36 36 H 1.08990 * 109.59582 * 114.29703 * 8 7 5 37 37 H 1.08994 * 109.71210 * 353.91607 * 8 7 5 38 38 H 1.08998 * 109.47703 * 186.07826 * 9 8 7 39 39 H 1.08998 * 109.48182 * 66.03445 * 9 8 7 40 40 H 1.09008 * 110.32836 * 0.20248 * 11 10 9 41 41 H 1.09000 * 110.32627 * 122.31345 * 11 10 9 42 42 H 0.96993 * 119.99617 * 185.00055 * 16 15 13 43 43 H 1.07999 * 119.85900 * 359.67309 * 22 21 12 44 44 H 1.08002 * 119.87474 * 179.97438 * 23 22 21 45 45 H 1.07993 * 120.07203 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.90047 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47982 * 59.82041 * 27 10 9 48 48 H 1.09003 * 109.47836 * 179.84994 * 27 10 9 49 49 H 1.09004 * 109.58922 * 245.71019 * 28 7 5 50 50 H 1.08992 * 109.59315 * 6.15144 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1291 0.0000 4 6 3.6239 0.6396 -0.0006 5 6 4.8664 1.4284 -0.0014 6 8 4.8804 2.5405 -0.4935 7 7 5.9887 0.9182 0.5432 8 6 5.9476 -0.3398 1.3013 9 6 6.5662 -0.1023 2.6832 10 6 7.9589 0.4999 2.5186 11 6 8.8739 -0.4757 1.7676 12 7 9.9617 -0.7749 2.7042 13 6 11.0149 -1.6084 2.4418 14 1 11.7212 -1.8486 3.2226 15 6 11.1752 -2.1453 1.1719 16 7 10.2363 -1.9809 0.2647 17 14 12.7240 -3.1011 0.7507 18 1 13.6175 -3.1430 1.9360 19 1 12.3594 -4.4857 0.3568 20 1 13.4260 -2.4347 -0.3755 21 6 9.7663 -0.0894 3.9003 22 6 10.5509 -0.0849 5.0576 23 6 10.1811 0.6764 6.1447 24 6 9.0303 1.4432 6.0995 25 6 8.2486 1.4447 4.9591 26 6 8.6128 0.6830 3.8661 27 6 7.8847 1.8320 1.7780 28 6 7.2761 1.6096 0.3893 29 7 3.5173 -0.7221 -0.0070 30 1 4.2640 -1.3413 -0.0124 31 7 2.2775 -1.0577 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 2.0206 2.1640 0.0004 36 1 6.5169 -1.1040 0.7724 37 1 4.9141 -0.6669 1.4148 38 1 6.6406 -1.0503 3.2159 39 1 5.9376 0.5849 3.2496 40 1 8.3296 -1.3848 1.5118 41 1 9.2699 -0.0063 0.8671 42 1 10.3144 -2.4164 -0.5985 43 1 11.4504 -0.6810 5.0998 44 1 10.7918 0.6747 7.0355 45 1 8.7433 2.0392 6.9531 46 1 7.3504 2.0433 4.9229 47 1 7.2615 2.5268 2.3411 48 1 8.8876 2.2460 1.6733 49 1 7.9497 0.9984 -0.2114 50 1 7.1184 2.5712 -0.0990 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096078852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = 93.138573 kcal Electronic energy + Delta-G solvation = -33845.775953 eV Core-core repulsion = 29646.857302 eV Total energy + Delta-G solvation = -4198.918650 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.77305 -40.62143 -39.24872 -37.02558 -35.62536 -33.89007 -33.13022 -31.97232 -31.45579 -30.64721 -29.42046 -28.31484 -28.01790 -26.96212 -25.27995 -23.69796 -23.27450 -22.43990 -21.42541 -20.86616 -20.35668 -20.28802 -18.86235 -17.64928 -17.42467 -16.54942 -15.96707 -15.88721 -15.60798 -15.02959 -14.92169 -14.82686 -14.60920 -14.23387 -13.94269 -13.83221 -13.57711 -13.19847 -13.17535 -13.02312 -12.90235 -12.75723 -12.59339 -12.55259 -12.39953 -12.16234 -11.64751 -11.48685 -11.39776 -11.22690 -11.05650 -10.92163 -10.74947 -10.57086 -10.52239 -10.36023 -10.10526 -10.01783 -9.68257 -9.50950 -9.26776 -9.23381 -8.82815 -8.59440 -7.91922 -6.72168 -6.57380 -3.79721 1.19276 2.35494 2.37337 2.53168 2.60014 2.78719 3.06001 3.09326 3.12037 3.15749 3.89890 4.21516 4.45218 4.57513 4.69811 4.78896 4.88408 4.94698 5.00778 5.15105 5.23924 5.26099 5.41213 5.43958 5.46236 5.55169 5.59639 5.60984 5.72481 5.77458 5.81420 5.86411 5.90164 5.99601 6.08268 6.19258 6.28009 6.33354 6.34680 6.41542 6.55872 6.59611 6.72363 6.79469 6.96530 6.99827 7.05481 7.20697 7.28044 7.34134 7.52192 7.53203 7.62916 7.81094 8.00274 8.04583 8.45472 9.06669 9.54152 10.47256 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.003115 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.405422 B = 8987.171686 C =10568.210338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.024 3.976 3 C -0.161 4.161 4 C -0.025 4.025 5 C 0.589 3.411 6 O -0.527 6.527 7 N -0.598 5.598 8 C 0.088 3.912 9 C -0.107 4.107 10 C -0.026 4.026 11 C 0.159 3.841 12 N -0.441 5.441 13 C -0.287 4.287 14 H 0.100 0.900 15 C 0.024 3.976 16 N -0.886 5.886 17 Si 0.931 3.069 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.196 3.804 22 C -0.214 4.214 23 C -0.061 4.061 24 C -0.248 4.248 25 C -0.040 4.040 26 C -0.212 4.212 27 C -0.109 4.109 28 C 0.110 3.890 29 N -0.378 5.378 30 H 0.448 0.552 31 N -0.275 5.275 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.270 0.730 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 2.943 0.181 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C -0.190 4.190 4 C -0.154 4.154 5 C 0.375 3.625 6 O -0.402 6.402 7 N -0.331 5.331 8 C -0.035 4.035 9 C -0.145 4.145 10 C -0.027 4.027 11 C 0.036 3.964 12 N -0.125 5.125 13 C -0.415 4.415 14 H 0.118 0.882 15 C -0.179 4.179 16 N -0.524 5.524 17 Si 0.758 3.242 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.205 1.205 21 C 0.076 3.924 22 C -0.239 4.239 23 C -0.080 4.080 24 C -0.270 4.270 25 C -0.059 4.059 26 C -0.218 4.218 27 C -0.148 4.148 28 C -0.011 4.011 29 N -0.097 5.097 30 H 0.296 0.704 31 N -0.109 5.109 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.157 2.124 -0.709 12.361 hybrid contribution 1.340 -0.189 -0.174 1.364 sum -10.817 1.935 -0.883 11.024 Atomic orbital electron populations 1.20090 0.86364 1.03254 1.02817 1.22071 0.97271 0.88668 1.05439 1.22022 0.89581 1.00470 1.06893 1.21740 0.96464 0.84585 1.12580 1.17051 0.81365 0.85363 0.78710 1.90817 1.83849 1.18644 1.46862 1.48020 1.08076 1.24639 1.52340 1.22212 1.01333 0.86031 0.93958 1.21795 0.96001 1.01970 0.94765 1.19804 0.94274 0.95255 0.93318 1.21897 0.86330 0.96511 0.91662 1.42955 1.21108 1.39056 1.09396 1.19585 1.02515 1.23028 0.96363 0.88246 1.25236 0.98970 0.98565 0.95090 1.69948 1.32703 1.42900 1.06809 0.85761 0.80872 0.78718 0.78846 1.19325 1.20632 1.20470 1.18386 0.94024 0.92140 0.87830 1.19988 1.02463 1.07868 0.93543 1.20456 0.95824 0.95369 0.96390 1.20230 0.99599 1.08412 0.98762 1.19917 0.97574 0.96428 0.91977 1.19278 0.99533 1.06999 0.96030 1.21827 1.01344 0.97085 0.94514 1.21851 0.82592 0.98426 0.98271 1.44169 1.06583 1.05559 1.53413 0.70362 1.73099 0.89834 1.27699 1.20228 0.90786 0.90923 0.90496 0.82002 0.89683 0.90512 0.90342 0.91576 0.91162 0.90418 0.91977 0.88003 0.88070 0.88273 0.88579 0.91700 0.90381 0.90041 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.13 16 2 C 0.02 0.27 7.22 -82.47 -0.60 -0.33 16 3 C -0.16 -1.94 10.88 -38.98 -0.42 -2.37 16 4 C -0.03 -0.33 6.30 -82.06 -0.52 -0.85 16 5 C 0.59 8.76 7.63 -12.63 -0.10 8.66 16 6 O -0.53 -9.26 16.45 5.25 0.09 -9.18 16 7 N -0.60 -8.38 2.96 -174.05 -0.52 -8.89 16 8 C 0.09 1.13 5.02 -3.67 -0.02 1.11 16 9 C -0.11 -1.59 4.78 -26.79 -0.13 -1.72 16 10 C -0.03 -0.44 0.69 -155.76 -0.11 -0.55 16 11 C 0.16 3.27 3.91 -3.76 -0.01 3.26 16 12 N -0.44 -10.31 3.18 -112.66 -0.36 -10.67 16 13 C -0.29 -7.09 9.94 -15.11 -0.15 -7.24 16 14 H 0.10 2.42 7.21 -52.49 -0.38 2.04 16 15 C 0.02 0.58 5.47 -17.45 -0.10 0.48 16 16 N -0.89 -21.35 10.29 55.49 0.57 -20.77 16 17 Si 0.93 19.05 29.56 -169.99 -5.03 14.02 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.20 4.30 6.64 -83.67 -0.56 3.75 16 22 C -0.21 -4.45 9.76 -39.16 -0.38 -4.83 16 23 C -0.06 -1.12 10.02 -39.71 -0.40 -1.52 16 24 C -0.25 -4.37 10.06 -39.53 -0.40 -4.77 16 25 C -0.04 -0.71 10.03 -39.62 -0.40 -1.11 16 26 C -0.21 -4.11 4.86 -104.34 -0.51 -4.61 16 27 C -0.11 -1.73 4.79 -26.81 -0.13 -1.86 16 28 C 0.11 1.63 6.12 -3.68 -0.02 1.61 16 29 N -0.38 -4.45 5.59 33.48 0.19 -4.27 16 30 H 0.45 4.46 6.92 -190.45 -1.32 3.14 16 31 N -0.27 -3.41 12.14 33.64 0.41 -3.00 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.09 1.12 6.80 -51.93 -0.35 0.76 16 37 H 0.08 0.86 4.64 -51.93 -0.24 0.62 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.51 5.95 -51.92 -0.31 1.20 16 41 H 0.08 1.72 5.69 -51.93 -0.30 1.42 16 42 H 0.27 6.23 8.32 -40.82 -0.34 5.89 16 43 H 0.10 2.09 7.48 -52.49 -0.39 1.70 16 44 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.08 1.27 6.81 -51.93 -0.35 0.91 16 50 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -28.15 392.09 -11.09 -39.24 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -7.79 Total: 10.61 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -4.56 Total: -13.00 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.29 Total: -47.60 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.15 -11.09 -39.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096078852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.377 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds