Wall clock time and date at job start Tue Mar 31 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 119.99904 * 2 1 4 4 H 1.48499 * 109.47578 * 269.99997 * 3 2 1 5 5 H 1.48498 * 109.47444 * 30.00796 * 3 2 1 6 6 H 1.48504 * 109.46940 * 150.00679 * 3 2 1 7 7 C 1.37879 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99629 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46735 * 180.02562 * 9 7 2 11 11 C 1.35612 * 124.78300 * 264.97547 * 10 9 7 12 12 C 1.36658 * 109.69885 * 180.02562 * 11 10 9 13 13 C 1.46380 * 126.78795 * 179.97438 * 12 11 10 14 14 C 1.35458 * 119.99900 * 312.77532 * 13 12 11 15 15 C 1.41490 * 119.99710 * 348.54679 * 14 13 12 16 16 O 1.21780 * 120.00214 * 353.07817 * 15 14 13 17 17 N 1.34777 * 119.99920 * 173.07810 * 15 14 13 18 18 C 1.47421 * 125.64796 * 0.02562 * 17 15 14 19 19 C 1.54909 * 104.83607 * 204.09334 * 18 17 15 20 20 C 1.55163 * 101.58170 * 322.99648 * 19 18 17 21 21 H 1.09002 * 110.71719 * 277.13464 * 20 19 18 22 22 C 1.50691 * 110.72382 * 154.04036 * 20 19 18 23 23 N 1.34774 * 120.00665 * 179.97438 * 22 20 19 24 24 O 1.21290 * 119.99809 * 359.97438 * 22 20 19 25 25 C 1.47023 * 125.64794 * 179.71984 * 17 15 14 26 26 C 1.47524 * 106.42953 * 0.22522 * 12 11 10 27 27 C 1.39243 * 133.96695 * 180.44254 * 26 12 11 28 28 C 1.37771 * 119.67703 * 179.61105 * 27 26 12 29 29 C 1.38747 * 120.29413 * 359.77878 * 28 27 26 30 30 C 1.37771 * 120.63040 * 359.95863 * 29 28 27 31 31 C 1.37983 * 124.78126 * 85.02130 * 10 9 7 32 32 H 0.96997 * 119.99826 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46914 * 60.00896 * 9 7 2 34 34 H 1.08999 * 109.47420 * 300.00285 * 9 7 2 35 35 H 1.08002 * 125.14704 * 0.04306 * 11 10 9 36 36 H 1.07998 * 120.00246 * 132.49581 * 13 12 11 37 37 H 1.07992 * 119.99984 * 168.54627 * 14 13 12 38 38 H 1.08999 * 110.36973 * 322.93288 * 18 17 15 39 39 H 1.09000 * 110.36481 * 85.14810 * 18 17 15 40 40 H 1.08999 * 111.00443 * 81.06640 * 19 18 17 41 41 H 1.08996 * 111.00740 * 204.92252 * 19 18 17 42 42 H 0.97008 * 119.99173 * 359.97438 * 23 22 20 43 43 H 0.96991 * 120.00847 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.88260 * 298.38900 * 25 17 15 45 45 H 1.08999 * 109.88432 * 59.55686 * 25 17 15 46 46 H 1.07998 * 120.16500 * 359.37351 * 27 26 12 47 47 H 1.08007 * 119.85481 * 179.75720 * 28 27 26 48 48 H 1.08005 * 119.68223 * 179.97438 * 29 28 27 49 49 H 1.07999 * 120.03197 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6316 -4.2641 -1.1101 12 6 3.5123 -5.2471 -0.7557 13 6 4.1998 -6.1742 -1.6560 14 6 3.5044 -6.8220 -2.6212 15 6 2.0898 -6.7963 -2.6121 16 8 1.4958 -6.3012 -1.6713 17 7 1.3996 -7.3197 -3.6446 18 6 1.9884 -7.9476 -4.8414 19 6 0.9021 -7.8094 -5.9370 20 6 -0.3971 -8.0242 -5.1164 21 1 -0.5987 -9.0873 -4.9847 22 6 -1.5652 -7.3401 -5.7784 23 7 -2.7904 -7.4077 -5.2208 24 8 -1.4029 -6.7285 -6.8132 25 6 -0.0653 -7.3647 -3.7610 26 6 3.6284 -5.1934 0.7139 27 6 4.3605 -5.9155 1.6528 28 6 4.2492 -5.6046 2.9904 29 6 3.4161 -4.5745 3.4025 30 6 2.6903 -3.8484 2.4837 31 6 2.7892 -4.1470 1.1285 32 1 -0.4850 0.8400 0.0004 33 1 0.6241 -2.5567 -0.8904 34 1 0.6246 -2.5571 0.8896 35 1 2.3237 -4.0397 -2.1207 36 1 5.2623 -6.3384 -1.5535 37 1 4.0298 -7.3580 -3.3977 38 1 2.8957 -7.4216 -5.1383 39 1 2.2053 -8.9986 -4.6505 40 1 0.9221 -6.8154 -6.3838 41 1 1.0150 -8.5808 -6.6988 42 1 -2.9202 -7.8972 -4.3934 43 1 -3.5423 -6.9677 -5.6471 44 1 -0.4839 -7.9559 -2.9465 45 1 -0.4706 -6.3532 -3.7340 46 1 5.0094 -6.7179 1.3345 47 1 4.8127 -6.1654 3.7214 48 1 3.3360 -4.3394 4.4536 49 1 2.0444 -3.0488 2.8152 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096179199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:29 Heat of formation + Delta-G solvation = 14.745761 kcal Electronic energy + Delta-G solvation = -32627.944495 eV Core-core repulsion = 28327.907816 eV Total energy + Delta-G solvation = -4300.036680 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.76646 -40.42941 -39.27256 -37.16422 -36.33866 -34.02095 -33.99265 -32.94137 -31.94535 -30.78236 -29.51989 -29.36273 -28.09118 -26.73345 -25.06004 -23.30026 -22.72741 -22.41651 -21.62097 -20.63112 -20.20869 -19.52141 -18.29217 -17.76550 -17.16873 -17.07089 -16.69706 -16.14111 -15.84913 -15.76538 -15.04926 -14.90139 -14.66615 -14.38039 -14.17894 -14.14152 -13.66889 -13.56677 -13.29311 -13.13453 -13.08106 -12.76249 -12.51752 -12.34138 -12.13997 -11.91231 -11.79360 -11.66644 -11.52063 -11.24469 -11.19715 -11.13634 -10.80755 -10.74510 -10.38845 -10.28830 -10.19839 -10.00703 -9.89829 -9.39803 -9.24277 -8.67235 -8.62905 -8.52656 -7.39742 -6.62940 -6.24158 -4.36561 1.24838 1.89841 2.27320 2.34813 2.99065 3.19529 3.25987 3.28126 3.30446 3.51857 3.74653 3.90040 4.03294 4.26598 4.28794 4.54399 4.58932 4.86010 4.93322 5.02704 5.06053 5.12096 5.25585 5.33670 5.37989 5.50086 5.54265 5.57423 5.58628 5.59823 5.68428 5.83237 5.90701 6.05520 6.15118 6.21871 6.35377 6.45152 6.45345 6.50765 6.65077 6.71240 6.89737 6.98056 7.01297 7.10623 7.18482 7.45456 7.56174 7.62977 7.65125 7.86802 7.93107 8.12290 8.18605 8.52007 8.71547 9.31112 10.79620 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007577 B = 0.002982 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3694.476243 B = 9387.989810 C =11853.526429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.438 5.438 11 C 0.168 3.832 12 C -0.227 4.227 13 C 0.077 3.923 14 C -0.278 4.278 15 C 0.565 3.435 16 O -0.520 6.520 17 N -0.626 5.626 18 C 0.101 3.899 19 C -0.114 4.114 20 C -0.127 4.127 21 H 0.110 0.890 22 C 0.530 3.470 23 N -0.854 5.854 24 O -0.538 6.538 25 C 0.123 3.877 26 C -0.076 4.076 27 C -0.093 4.093 28 C -0.151 4.151 29 C -0.127 4.127 30 C -0.103 4.103 31 C 0.097 3.903 32 H 0.268 0.732 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.403 0.597 43 H 0.403 0.597 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -19.676 -7.563 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.112 5.112 11 C 0.032 3.968 12 C -0.234 4.234 13 C 0.056 3.944 14 C -0.299 4.299 15 C 0.359 3.641 16 O -0.397 6.397 17 N -0.363 5.363 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.149 4.149 21 H 0.128 0.872 22 C 0.314 3.686 23 N -0.417 5.417 24 O -0.414 6.414 25 C -0.001 4.001 26 C -0.081 4.081 27 C -0.112 4.112 28 C -0.170 4.170 29 C -0.147 4.147 30 C -0.123 4.123 31 C -0.010 4.010 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.232 0.768 43 H 0.234 0.766 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.336 -18.577 -7.607 20.119 hybrid contribution -0.221 0.789 0.036 0.820 sum 1.115 -17.788 -7.571 19.364 Atomic orbital electron populations 1.69934 1.06096 1.27650 1.49087 1.24949 0.94935 0.99517 0.94328 0.86381 0.79831 0.82254 0.78419 1.20310 1.20854 1.19554 1.21365 0.93747 0.89839 1.53065 0.91657 1.19735 0.87117 0.81955 0.99608 1.44543 1.35350 1.27698 1.03580 1.21712 0.91803 0.91874 0.91435 1.18552 1.09454 1.04201 0.91193 1.21663 0.97739 0.86661 0.88336 1.21668 0.93233 1.10249 1.04744 1.16937 0.88512 0.77767 0.80850 1.91009 1.71329 1.44244 1.33087 1.48513 1.05858 1.61318 1.20577 1.22324 0.97269 0.98064 0.84548 1.22717 0.91157 1.04663 0.96678 1.22427 0.94610 1.01367 0.96523 0.87159 1.20274 0.84175 0.79712 0.84452 1.43887 1.10524 1.57802 1.29465 1.90766 1.84549 1.42271 1.23789 1.21632 0.82747 1.01186 0.94506 1.18890 0.99640 0.97396 0.92137 1.20209 0.99470 0.99394 0.92088 1.20683 1.01563 0.99589 0.95129 1.20600 0.98625 0.97159 0.98305 1.20166 1.01510 1.00811 0.89816 1.18200 0.97975 0.96003 0.88794 0.92275 0.93540 0.93664 0.82988 0.85894 0.86052 0.89973 0.91387 0.88980 0.89405 0.76836 0.76623 0.90867 0.91132 0.87193 0.87036 0.86684 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.07 1.82 5.46 -17.81 -0.10 1.72 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.90 9.39 -34.44 -0.32 -15.23 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.23 6.06 5.71 -5.19 -0.03 6.03 16 10 N -0.44 -10.23 2.73 -115.38 -0.31 -10.54 16 11 C 0.17 3.55 8.35 -16.45 -0.14 3.41 16 12 C -0.23 -4.30 4.63 -103.41 -0.48 -4.78 16 13 C 0.08 1.11 10.16 -37.30 -0.38 0.73 16 14 C -0.28 -3.62 9.26 -39.34 -0.36 -3.99 16 15 C 0.57 8.65 7.22 -15.02 -0.11 8.54 16 16 O -0.52 -10.23 12.70 5.12 0.06 -10.16 16 17 N -0.63 -7.48 3.33 -173.96 -0.58 -8.05 16 18 C 0.10 0.82 6.44 -2.53 -0.02 0.81 16 19 C -0.11 -0.91 6.18 -24.58 -0.15 -1.07 16 20 C -0.13 -1.01 3.32 -89.93 -0.30 -1.30 16 21 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 22 C 0.53 5.18 7.29 -10.99 -0.08 5.09 16 23 N -0.85 -5.53 8.87 31.22 0.28 -5.26 16 24 O -0.54 -7.55 16.54 5.55 0.09 -7.46 16 25 C 0.12 1.31 6.47 -3.06 -0.02 1.29 16 26 C -0.08 -1.53 6.36 -104.93 -0.67 -2.20 16 27 C -0.09 -1.59 10.09 -39.38 -0.40 -1.99 16 28 C -0.15 -2.42 10.03 -39.56 -0.40 -2.82 16 29 C -0.13 -2.20 10.01 -39.56 -0.40 -2.59 16 30 C -0.10 -2.11 9.97 -39.42 -0.39 -2.50 16 31 C 0.10 2.15 6.79 -83.96 -0.57 1.58 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.15 3.08 7.90 -52.49 -0.41 2.67 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.16 6.85 -52.49 -0.36 0.80 16 38 H 0.08 0.61 7.22 -51.93 -0.37 0.23 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.95 7.41 -51.93 -0.38 0.57 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 43 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 48 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 49 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 411.62 15.07 6.20 6.20 Total: -1.00 -35.42 411.62 -10.70 -46.13 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.86 Total: 6.83 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -5.31 Total: -9.27 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.12 Total: -48.43 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.16 Total: -17.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.42 -10.70 -46.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096179199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.875 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds