Wall clock time and date at job start Tue Mar 31 2020 05:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48503 * 109.47267 * 270.00461 * 3 2 1 5 5 H 1.48501 * 109.46969 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.46913 * 150.00127 * 3 2 1 7 7 C 1.37877 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00245 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47250 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99669 * 269.99425 * 10 9 7 12 12 C 1.50698 * 109.47289 * 270.00141 * 11 10 9 13 13 C 1.38229 * 119.61905 * 94.73339 * 12 11 10 14 14 C 1.38630 * 119.16220 * 179.75328 * 13 12 11 15 15 C 1.38674 * 118.41605 * 0.50849 * 14 13 12 16 16 C 1.38185 * 119.16686 * 359.72939 * 15 14 13 17 17 N 1.31859 * 119.61841 * 274.99771 * 12 11 10 18 18 C 1.34774 * 119.99631 * 90.00107 * 10 9 7 19 19 O 1.21725 * 119.99752 * 180.02562 * 18 10 9 20 20 C 1.46251 * 120.00563 * 359.97438 * 18 10 9 21 21 C 1.34989 * 120.00236 * 186.91388 * 20 18 10 22 22 C 1.47003 * 119.99749 * 11.29397 * 21 20 18 23 23 C 1.39953 * 120.10572 * 42.53924 * 22 21 20 24 24 C 1.37727 * 119.97660 * 180.02562 * 23 22 21 25 25 C 1.38886 * 120.24587 * 359.89949 * 24 23 22 26 26 C 1.39585 * 120.10067 * 0.09823 * 25 24 23 27 27 C 1.38079 * 120.00523 * 359.94914 * 26 25 24 28 28 O 1.36539 * 108.58998 * 179.97438 * 26 25 24 29 29 C 1.43976 * 105.45865 * 17.31874 * 28 26 25 30 30 O 1.36400 * 131.32653 * 180.02562 * 25 24 23 31 31 H 0.96995 * 120.00265 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47173 * 59.99488 * 9 7 2 33 33 H 1.09003 * 109.46779 * 299.99891 * 9 7 2 34 34 H 1.08998 * 109.47628 * 30.00649 * 11 10 9 35 35 H 1.09005 * 109.47003 * 150.00325 * 11 10 9 36 36 H 1.08000 * 120.41470 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.79191 * 180.25914 * 14 13 12 38 38 H 1.08003 * 120.41770 * 179.71244 * 15 14 13 39 39 H 1.08001 * 119.61520 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.00190 * 6.91787 * 20 18 10 41 41 H 1.07997 * 119.99988 * 191.29857 * 21 20 18 42 42 H 1.08004 * 120.01452 * 0.02562 * 23 22 21 43 43 H 1.07995 * 119.87309 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.06108 * 179.97438 * 27 26 25 45 45 H 1.08991 * 110.56665 * 214.21933 * 29 28 26 46 46 H 1.09004 * 110.56070 * 91.35836 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2656 1.2678 12 6 5.6680 -3.0287 1.7021 13 6 5.9523 -1.9984 2.5787 14 6 7.2643 -1.7922 2.9760 15 6 8.2472 -2.6271 2.4662 16 6 7.8880 -3.6333 1.5898 17 7 6.6285 -3.8034 1.2376 18 6 4.2239 -3.2109 -1.1682 19 8 4.6292 -4.3587 -1.1681 20 6 3.9792 -2.5220 -2.4348 21 6 4.0686 -3.1986 -3.5995 22 6 4.1643 -4.6655 -3.5918 23 6 3.3590 -5.4170 -2.7283 24 6 3.4512 -6.7912 -2.7230 25 6 4.3398 -7.4360 -3.5735 26 6 5.1461 -6.6932 -4.4375 27 6 5.0603 -5.3151 -4.4482 28 8 5.9217 -7.5553 -5.1583 29 6 5.2926 -8.8432 -5.0217 30 8 4.6130 -8.7600 -3.7551 31 1 -0.4850 0.8400 0.0004 32 1 3.8752 -0.6804 0.8888 33 1 3.8744 -0.6801 -0.8912 34 1 3.5640 -2.8814 2.0276 35 1 4.0775 -4.3349 1.1378 36 1 5.1617 -1.3643 2.9520 37 1 7.5156 -0.9976 3.6630 38 1 9.2804 -2.4925 2.7503 39 1 8.6475 -4.2880 1.1886 40 1 3.7270 -1.4719 -2.4385 41 1 4.0700 -2.6622 -4.5368 42 1 2.6655 -4.9195 -2.0664 43 1 2.8288 -7.3694 -2.0563 44 1 5.6841 -4.7394 -5.1160 45 1 6.0413 -9.6349 -5.0029 46 1 4.5792 -9.0083 -5.8292 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096292773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:39 Heat of formation + Delta-G solvation = 12.396058 kcal Electronic energy + Delta-G solvation = -32563.128553 eV Core-core repulsion = 28192.582799 eV Total energy + Delta-G solvation = -4370.545754 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94100 -40.16316 -39.29987 -37.53288 -36.13880 -35.22371 -33.27153 -32.68422 -32.26140 -31.52712 -30.31639 -28.95226 -28.23294 -26.52559 -25.58945 -23.64836 -23.38088 -22.66052 -22.49653 -22.10900 -20.71101 -18.37610 -17.75023 -17.35373 -17.18022 -16.91977 -16.74715 -16.52243 -16.01205 -15.94551 -15.41537 -15.18862 -14.57722 -14.32856 -14.16792 -13.88254 -13.70031 -13.65123 -13.40907 -13.17889 -13.14098 -12.85309 -12.80489 -12.65414 -12.52948 -12.28291 -11.99776 -11.73948 -11.57508 -11.44600 -10.98131 -10.91778 -10.84662 -10.61553 -10.36230 -9.74710 -9.69605 -9.24806 -9.19486 -9.14239 -8.83794 -8.74943 -8.52603 -7.77340 -7.36801 -6.26590 -4.28533 0.96846 1.21796 1.43960 1.58826 2.06487 2.94534 3.12154 3.20202 3.22491 3.55737 3.67702 3.91406 3.97557 4.20433 4.21645 4.55010 4.66273 4.72494 4.85173 4.89408 4.95314 5.03640 5.10051 5.16794 5.20010 5.28741 5.34060 5.41000 5.48327 5.69366 5.70911 5.77363 5.88248 5.92609 6.17200 6.19672 6.25250 6.27065 6.31199 6.36173 6.41368 6.48376 6.58097 6.67880 6.75462 6.84065 6.87525 7.26618 7.34867 7.38074 8.07134 8.25184 8.36192 8.78825 8.93786 9.32533 10.85898 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.003433 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.722177 B = 8154.800353 C =10626.987439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.208 3.792 10 N -0.579 5.579 11 C 0.168 3.832 12 C 0.120 3.880 13 C -0.160 4.160 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.455 5.455 18 C 0.539 3.461 19 O -0.532 6.532 20 C -0.170 4.170 21 C -0.057 4.057 22 C -0.046 4.046 23 C -0.015 4.015 24 C -0.110 4.110 25 C 0.034 3.966 26 C 0.008 3.992 27 C -0.084 4.084 28 O -0.315 6.315 29 C 0.214 3.786 30 O -0.313 6.313 31 H 0.267 0.733 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.914 -7.577 -3.309 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.098 0.902 9 C 0.087 3.913 10 N -0.309 5.309 11 C 0.044 3.956 12 C -0.019 4.019 13 C -0.180 4.180 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.064 4.064 17 N -0.164 5.164 18 C 0.329 3.671 19 O -0.412 6.412 20 C -0.191 4.191 21 C -0.077 4.077 22 C -0.046 4.046 23 C -0.034 4.034 24 C -0.129 4.129 25 C -0.010 4.010 26 C -0.035 4.035 27 C -0.102 4.102 28 O -0.231 6.231 29 C 0.102 3.898 30 O -0.230 6.230 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.870 -8.873 -3.857 15.314 hybrid contribution 0.741 1.777 0.643 2.029 sum 12.611 -7.097 -3.215 14.823 Atomic orbital electron populations 1.69880 1.06192 1.27220 1.49288 1.24857 0.94686 0.98771 0.94280 0.86984 0.80438 0.84156 0.79004 1.19813 1.20865 1.18924 1.21368 0.88856 0.95074 1.52514 0.90168 1.19873 0.95908 0.78020 0.97543 1.47811 1.63224 1.15813 1.04056 1.20148 0.88759 0.99765 0.86952 1.21918 0.96626 0.91078 0.92324 1.22121 0.97621 0.98953 0.99346 1.21540 0.92897 0.98220 0.98082 1.22101 1.00299 0.97672 1.00097 1.22780 0.93454 0.95881 0.94278 1.67667 1.00347 1.26663 1.21726 1.18342 0.78149 0.86079 0.84545 1.90852 1.46419 1.16876 1.87024 1.23334 1.01620 1.01966 0.92138 1.22088 0.96265 0.91550 0.97761 1.18536 0.96883 0.93025 0.96148 1.20946 0.97093 0.91602 0.93727 1.19840 0.98755 0.93997 1.00327 1.19888 0.99083 0.81931 1.00057 1.19443 0.94815 0.92310 0.96953 1.19956 1.00153 0.89264 1.00869 1.87314 1.48007 1.17967 1.69860 1.25490 0.92833 0.86612 0.84851 1.87294 1.74431 1.22815 1.38413 0.92317 0.95021 0.95153 0.88512 0.88716 0.84578 0.85163 0.85323 0.83286 0.84006 0.84851 0.84888 0.85256 0.85282 0.85795 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 13.96 55.43 0.77 -24.02 16 2 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 18.89 27.47 -169.99 -4.67 14.22 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 7 C -0.54 -13.37 9.94 -34.44 -0.34 -13.71 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.21 4.33 3.98 -5.19 -0.02 4.31 16 10 N -0.58 -11.32 2.44 -178.14 -0.43 -11.75 16 11 C 0.17 2.98 5.71 -5.20 -0.03 2.95 16 12 C 0.12 2.01 6.36 -82.58 -0.53 1.48 16 13 C -0.16 -2.30 9.72 -39.44 -0.38 -2.69 16 14 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 15 C -0.18 -2.14 10.11 -39.44 -0.40 -2.54 16 16 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 17 N -0.46 -7.93 10.27 -9.47 -0.10 -8.03 16 18 C 0.54 10.53 6.60 -13.04 -0.09 10.44 16 19 O -0.53 -11.00 11.68 5.17 0.06 -10.94 16 20 C -0.17 -2.97 9.13 -37.52 -0.34 -3.31 16 21 C -0.06 -0.86 9.81 -37.19 -0.36 -1.22 16 22 C -0.05 -0.73 4.58 -105.07 -0.48 -1.22 16 23 C -0.02 -0.26 6.56 -39.13 -0.26 -0.52 16 24 C -0.11 -1.78 10.04 -39.53 -0.40 -2.18 16 25 C 0.03 0.56 7.16 -38.84 -0.28 0.28 16 26 C 0.01 0.13 7.13 -39.14 -0.28 -0.15 16 27 C -0.08 -1.28 9.80 -39.00 -0.38 -1.66 16 28 O -0.31 -4.55 11.41 -45.81 -0.52 -5.07 16 29 C 0.21 2.37 8.88 101.05 0.90 3.27 16 30 O -0.31 -4.62 11.40 -45.36 -0.52 -5.13 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 33 H 0.03 0.62 5.45 -51.93 -0.28 0.34 16 34 H 0.10 1.61 7.97 -51.93 -0.41 1.20 16 35 H 0.09 1.75 7.42 -51.93 -0.39 1.37 16 36 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.14 2.43 6.15 -52.49 -0.32 2.11 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.36 6.91 -52.48 -0.36 2.00 16 43 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 45 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -32.04 391.82 -9.40 -41.44 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.53 Total: 8.20 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.36 Total: -4.83 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.24 Total: -43.80 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.98 Total: -21.14 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.67 Total: 14.22 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.04 -9.40 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096292773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.834 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds