Wall clock time and date at job start Tue Mar 31 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48503 * 109.47267 * 270.00461 * 3 2 1 5 5 H 1.48501 * 109.46969 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.46913 * 150.00127 * 3 2 1 7 7 C 1.37877 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00245 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47250 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99669 * 269.99425 * 10 9 7 12 12 C 1.50698 * 109.47289 * 270.00141 * 11 10 9 13 13 C 1.38229 * 119.61905 * 94.73339 * 12 11 10 14 14 C 1.38630 * 119.16220 * 179.75328 * 13 12 11 15 15 C 1.38674 * 118.41605 * 0.50849 * 14 13 12 16 16 C 1.38185 * 119.16686 * 359.72939 * 15 14 13 17 17 N 1.31859 * 119.61841 * 274.99771 * 12 11 10 18 18 C 1.34774 * 119.99631 * 90.00107 * 10 9 7 19 19 O 1.21725 * 119.99752 * 180.02562 * 18 10 9 20 20 C 1.46251 * 120.00563 * 359.97438 * 18 10 9 21 21 C 1.34989 * 120.00236 * 186.91388 * 20 18 10 22 22 C 1.47003 * 119.99749 * 11.29397 * 21 20 18 23 23 C 1.39953 * 120.10572 * 42.53924 * 22 21 20 24 24 C 1.37727 * 119.97660 * 180.02562 * 23 22 21 25 25 C 1.38886 * 120.24587 * 359.89949 * 24 23 22 26 26 C 1.39585 * 120.10067 * 0.09823 * 25 24 23 27 27 C 1.38079 * 120.00523 * 359.94914 * 26 25 24 28 28 O 1.36539 * 108.58998 * 179.97438 * 26 25 24 29 29 C 1.43976 * 105.45865 * 17.31874 * 28 26 25 30 30 O 1.36400 * 131.32653 * 180.02562 * 25 24 23 31 31 H 0.96995 * 120.00265 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47173 * 59.99488 * 9 7 2 33 33 H 1.09003 * 109.46779 * 299.99891 * 9 7 2 34 34 H 1.08998 * 109.47628 * 30.00649 * 11 10 9 35 35 H 1.09005 * 109.47003 * 150.00325 * 11 10 9 36 36 H 1.08000 * 120.41470 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.79191 * 180.25914 * 14 13 12 38 38 H 1.08003 * 120.41770 * 179.71244 * 15 14 13 39 39 H 1.08001 * 119.61520 * 180.02562 * 16 15 14 40 40 H 1.07997 * 120.00190 * 6.91787 * 20 18 10 41 41 H 1.07997 * 119.99988 * 191.29857 * 21 20 18 42 42 H 1.08004 * 120.01452 * 0.02562 * 23 22 21 43 43 H 1.07995 * 119.87309 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.06108 * 179.97438 * 27 26 25 45 45 H 1.08991 * 110.56665 * 214.21933 * 29 28 26 46 46 H 1.09004 * 110.56070 * 91.35836 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2445 -3.2656 1.2678 12 6 5.6680 -3.0287 1.7021 13 6 5.9523 -1.9984 2.5787 14 6 7.2643 -1.7922 2.9760 15 6 8.2472 -2.6271 2.4662 16 6 7.8880 -3.6333 1.5898 17 7 6.6285 -3.8034 1.2376 18 6 4.2239 -3.2109 -1.1682 19 8 4.6292 -4.3587 -1.1681 20 6 3.9792 -2.5220 -2.4348 21 6 4.0686 -3.1986 -3.5995 22 6 4.1643 -4.6655 -3.5918 23 6 3.3590 -5.4170 -2.7283 24 6 3.4512 -6.7912 -2.7230 25 6 4.3398 -7.4360 -3.5735 26 6 5.1461 -6.6932 -4.4375 27 6 5.0603 -5.3151 -4.4482 28 8 5.9217 -7.5553 -5.1583 29 6 5.2926 -8.8432 -5.0217 30 8 4.6130 -8.7600 -3.7551 31 1 -0.4850 0.8400 0.0004 32 1 3.8752 -0.6804 0.8888 33 1 3.8744 -0.6801 -0.8912 34 1 3.5640 -2.8814 2.0276 35 1 4.0775 -4.3349 1.1378 36 1 5.1617 -1.3643 2.9520 37 1 7.5156 -0.9976 3.6630 38 1 9.2804 -2.4925 2.7503 39 1 8.6475 -4.2880 1.1886 40 1 3.7270 -1.4719 -2.4385 41 1 4.0700 -2.6622 -4.5368 42 1 2.6655 -4.9195 -2.0664 43 1 2.8288 -7.3694 -2.0563 44 1 5.6841 -4.7394 -5.1160 45 1 6.0413 -9.6349 -5.0029 46 1 4.5792 -9.0083 -5.8292 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096292773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:38 Heat of formation + Delta-G solvation = -6.427285 kcal Electronic energy + Delta-G solvation = -32563.944795 eV Core-core repulsion = 28192.582799 eV Total energy + Delta-G solvation = -4371.361995 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.05821 -41.38674 -40.59533 -38.80952 -37.25505 -36.75144 -34.76700 -34.30371 -33.37682 -32.78220 -31.54293 -30.15372 -29.93454 -27.84354 -26.61522 -24.98603 -24.55796 -24.11643 -23.84084 -23.28645 -21.97459 -19.73793 -19.08183 -18.88547 -18.58922 -18.15156 -18.02785 -17.63466 -17.22072 -17.13531 -16.56284 -16.51309 -16.13866 -15.55406 -15.47894 -15.24526 -14.92041 -14.83088 -14.76520 -14.47551 -14.34750 -14.22243 -13.96998 -13.91473 -13.77512 -13.73734 -13.41447 -13.13070 -12.95225 -12.67065 -12.55527 -12.39400 -12.12166 -12.00119 -11.91764 -11.64873 -10.79188 -10.76591 -10.60302 -10.43256 -10.31660 -9.93877 -9.78903 -9.28982 -8.63160 -8.25081 -6.32218 -0.31682 0.14985 0.34131 0.42362 0.79039 1.42966 1.44705 1.53713 1.84820 2.33035 2.37876 2.48739 2.56395 2.70240 3.02841 3.08830 3.41695 3.52666 3.75415 3.80610 3.85461 3.93574 4.04245 4.08272 4.15382 4.20144 4.22544 4.27561 4.30322 4.49790 4.53700 4.59903 4.65083 4.75290 4.81162 4.87698 4.89670 4.99730 5.05052 5.14855 5.19249 5.25859 5.28346 5.40633 5.46162 5.47917 5.60539 5.76302 5.82841 6.17132 6.24162 6.66461 6.75999 7.16745 7.30707 7.46478 8.91075 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.003433 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.722177 B = 8154.800353 C =10626.987439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.534 4.534 8 H 0.032 0.968 9 C 0.220 3.780 10 N -0.586 5.586 11 C 0.169 3.831 12 C 0.097 3.903 13 C -0.168 4.168 14 C -0.076 4.076 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.497 5.497 18 C 0.532 3.468 19 O -0.551 6.551 20 C -0.204 4.204 21 C -0.028 4.028 22 C -0.060 4.060 23 C -0.027 4.027 24 C -0.123 4.123 25 C 0.026 3.974 26 C 0.003 3.997 27 C -0.081 4.081 28 O -0.323 6.323 29 C 0.204 3.796 30 O -0.327 6.327 31 H 0.267 0.733 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.176 0.824 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.399 -6.345 -4.055 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.573 4.573 8 H 0.050 0.950 9 C 0.098 3.902 10 N -0.315 5.315 11 C 0.046 3.954 12 C -0.041 4.041 13 C -0.188 4.188 14 C -0.102 4.102 15 C -0.185 4.185 16 C -0.080 4.080 17 N -0.207 5.207 18 C 0.323 3.677 19 O -0.432 6.432 20 C -0.225 4.225 21 C -0.047 4.047 22 C -0.060 4.060 23 C -0.046 4.046 24 C -0.142 4.142 25 C -0.018 4.018 26 C -0.041 4.041 27 C -0.099 4.099 28 O -0.240 6.240 29 C 0.094 3.906 30 O -0.244 6.244 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.162 0.838 41 H 0.193 0.807 42 H 0.130 0.870 43 H 0.153 0.847 44 H 0.174 0.826 45 H 0.178 0.822 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.377 -7.670 -4.602 17.789 hybrid contribution -0.311 1.133 0.836 1.442 sum 15.066 -6.537 -3.766 16.849 Atomic orbital electron populations 1.70048 1.08367 1.28271 1.51447 1.25725 0.95347 1.02830 0.93783 0.85885 0.79814 0.78676 0.79728 1.18614 1.21336 1.16228 1.21476 0.90999 0.93233 1.51591 0.94972 1.19656 0.92985 0.79136 0.98440 1.47845 1.63378 1.15472 1.04839 1.20088 0.90594 0.98317 0.86447 1.21620 0.95555 0.92759 0.94188 1.22249 0.99277 0.98348 0.98970 1.21979 0.91682 0.98741 0.97798 1.22503 1.02181 0.95806 0.98021 1.23209 0.92631 0.97162 0.95043 1.67542 1.01875 1.27950 1.23318 1.18764 0.77666 0.86014 0.85226 1.90833 1.47418 1.17603 1.87362 1.23292 1.05027 1.02223 0.91914 1.22514 0.92447 0.91084 0.98634 1.18709 0.97272 0.93664 0.96365 1.20834 0.97586 0.92103 0.94054 1.19931 0.99388 0.93986 1.00860 1.19994 0.98989 0.82833 0.99976 1.19632 0.94741 0.92799 0.96936 1.20194 0.99757 0.89418 1.00561 1.87292 1.48221 1.18897 1.69566 1.26105 0.94292 0.86073 0.84138 1.87268 1.74784 1.21968 1.40349 0.92347 0.93900 0.93701 0.88468 0.90857 0.83901 0.81529 0.81366 0.81597 0.83784 0.80727 0.87003 0.84741 0.82605 0.82201 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 13.96 21.45 0.30 -54.21 16 2 C 0.02 1.16 5.47 84.65 0.46 1.62 16 3 Si 0.94 38.37 27.47 68.60 1.88 40.26 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -8.75 6.54 99.48 0.65 -8.10 16 7 C -0.53 -27.49 9.94 25.60 0.25 -27.23 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 9 C 0.22 9.20 3.98 85.63 0.34 9.54 16 10 N -0.59 -23.82 2.44 -835.72 -2.04 -25.86 16 11 C 0.17 6.40 5.71 85.63 0.49 6.89 16 12 C 0.10 3.30 6.36 42.55 0.27 3.57 16 13 C -0.17 -4.62 9.72 22.36 0.22 -4.40 16 14 C -0.08 -1.60 10.18 22.47 0.23 -1.37 16 15 C -0.17 -3.34 10.11 22.36 0.23 -3.11 16 16 C 0.08 2.05 11.18 84.67 0.95 3.00 16 17 N -0.50 -17.49 10.27 -183.88 -1.89 -19.38 16 18 C 0.53 21.64 6.60 86.33 0.57 22.21 16 19 O -0.55 -23.96 11.68 -4.43 -0.05 -24.01 16 20 C -0.20 -7.17 9.13 23.61 0.22 -6.96 16 21 C -0.03 -0.81 9.81 23.82 0.23 -0.57 16 22 C -0.06 -1.92 4.58 -20.15 -0.09 -2.01 16 23 C -0.03 -0.97 6.56 22.56 0.15 -0.82 16 24 C -0.12 -4.16 10.04 22.30 0.22 -3.94 16 25 C 0.03 0.86 7.16 22.75 0.16 1.02 16 26 C 0.00 0.09 7.13 22.56 0.16 0.25 16 27 C -0.08 -2.36 9.80 22.65 0.22 -2.14 16 28 O -0.32 -8.70 11.41 -76.51 -0.87 -9.57 16 29 C 0.20 4.06 8.88 113.37 1.01 5.07 16 30 O -0.33 -9.38 11.40 -74.88 -0.85 -10.24 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.04 1.71 7.13 -2.39 -0.02 1.70 16 33 H 0.05 1.78 5.45 -2.39 -0.01 1.77 16 34 H 0.10 3.49 7.97 -2.39 -0.02 3.47 16 35 H 0.07 2.99 7.42 -2.38 -0.02 2.98 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.14 4.92 6.15 -2.91 -0.02 4.90 16 41 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.38 6.91 -2.91 -0.02 4.36 16 43 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.03 391.82 3.73 -70.30 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.96 Total: 32.10 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.29 Total: 0.61 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.63 Total: -99.44 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.78 Total: -43.82 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.88 Total: 40.26 kcal Total: -74.03 3.73 -70.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096292773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.871 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds