Wall clock time and date at job start Tue Mar 31 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47505 * 357.04659 * 3 2 1 5 5 C 1.37098 * 119.99980 * 89.02535 * 4 3 2 6 6 H 1.07999 * 120.00227 * 180.09762 * 5 4 3 7 7 C 1.38952 * 119.99887 * 0.10898 * 5 4 3 8 8 N 1.31414 * 119.99638 * 331.70962 * 7 5 4 9 9 Si 1.86800 * 120.00076 * 151.71686 * 7 5 4 10 10 H 1.48506 * 109.46977 * 94.99518 * 9 7 5 11 11 H 1.48497 * 109.47028 * 214.98887 * 9 7 5 12 12 H 1.48496 * 109.47314 * 334.99171 * 9 7 5 13 13 C 1.34771 * 120.00358 * 269.03100 * 4 3 2 14 14 O 1.21291 * 120.00342 * 184.87094 * 13 4 3 15 15 C 1.50704 * 120.00022 * 4.86639 * 13 4 3 16 16 C 1.53032 * 109.46290 * 203.23574 * 15 13 4 17 17 C 1.53197 * 109.31486 * 178.62868 * 16 15 13 18 18 N 1.46928 * 108.77495 * 54.62959 * 17 16 15 19 19 C 1.34775 * 120.62654 * 126.37001 * 18 17 16 20 20 O 1.21699 * 120.00296 * 354.80744 * 19 18 17 21 21 C 1.46431 * 120.00141 * 174.80649 * 19 18 17 22 22 C 1.34804 * 120.00045 * 188.11776 * 21 19 18 23 23 C 1.47208 * 120.00234 * 10.69983 * 22 21 19 24 24 C 1.39833 * 120.16994 * 224.13644 * 23 22 21 25 25 C 1.37881 * 119.82572 * 180.02562 * 24 23 22 26 26 C 1.38403 * 120.17601 * 359.97438 * 25 24 23 27 27 C 1.38405 * 120.33881 * 0.02564 * 26 25 24 28 28 C 1.37892 * 120.17300 * 359.97438 * 27 26 25 29 29 C 1.46923 * 118.74285 * 306.65032 * 18 17 16 30 30 C 1.52764 * 109.00929 * 53.30372 * 29 18 17 31 31 H 1.09005 * 109.47339 * 237.04299 * 3 2 1 32 32 H 1.09004 * 109.47281 * 117.05156 * 3 2 1 33 33 H 0.96999 * 119.99583 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.45531 * 323.21235 * 15 13 4 35 35 H 1.09006 * 109.49893 * 58.67754 * 16 15 13 36 36 H 1.09000 * 109.49581 * 298.57786 * 16 15 13 37 37 H 1.09001 * 109.58584 * 294.84872 * 17 16 15 38 38 H 1.08994 * 109.70649 * 174.49239 * 17 16 15 39 39 H 1.08000 * 119.99325 * 8.12694 * 21 19 18 40 40 H 1.08008 * 119.99866 * 190.69419 * 22 21 19 41 41 H 1.08000 * 120.08379 * 0.04751 * 24 23 22 42 42 H 1.08006 * 119.91648 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.83364 * 179.74076 * 26 25 24 44 44 H 1.08000 * 119.91227 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.08282 * 179.97438 * 28 27 26 46 46 H 1.08991 * 109.59015 * 173.14200 * 29 18 17 47 47 H 1.09004 * 109.58253 * 293.57095 * 29 18 17 48 48 H 1.09003 * 109.56397 * 185.55661 * 30 29 18 49 49 H 1.09002 * 109.35727 * 65.49994 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.3784 0.0712 5 6 3.3068 -2.0916 -1.0808 6 1 3.6658 -3.1089 -1.0283 7 6 3.0577 -1.5056 -2.3158 8 7 2.1505 -0.5611 -2.4239 9 14 4.0124 -2.0606 -3.8225 10 1 3.2309 -3.0918 -4.5514 11 1 4.2496 -0.8973 -4.7143 12 1 5.3152 -2.6340 -3.3995 13 6 3.3405 -1.9462 1.2689 14 8 3.8284 -3.0551 1.3266 15 6 3.0067 -1.2031 2.5369 16 6 3.8610 -1.7447 3.6852 17 6 3.5437 -0.9641 4.9647 18 7 2.0962 -1.0245 5.2088 19 6 1.6170 -1.4506 6.3942 20 8 2.3796 -1.8788 7.2404 21 6 0.1787 -1.3983 6.6640 22 6 -0.2854 -1.6680 7.9006 23 6 0.6521 -1.7827 9.0298 24 6 0.5154 -2.8234 9.9537 25 6 1.3971 -2.9238 11.0090 26 6 2.4157 -1.9983 11.1549 27 6 2.5575 -0.9654 10.2447 28 6 1.6838 -0.8515 9.1840 29 6 1.1808 -0.6175 4.1340 30 6 1.5247 -1.3967 2.8659 31 1 2.9711 0.5599 0.8623 32 1 2.9711 0.4682 -0.9153 33 1 1.9764 -0.1523 -3.2861 34 1 3.2127 -0.1414 2.4004 35 1 4.9166 -1.6277 3.4400 36 1 3.6374 -2.8005 3.8384 37 1 3.8509 0.0748 4.8445 38 1 4.0752 -1.4071 5.8068 39 1 -0.5103 -1.1437 5.8722 40 1 -1.3450 -1.7998 8.0629 41 1 -0.2785 -3.5469 9.8407 42 1 1.2926 -3.7268 11.7237 43 1 3.1007 -2.0797 11.9859 44 1 3.3546 -0.2467 10.3654 45 1 1.7955 -0.0447 8.4748 46 1 0.1537 -0.8342 4.4271 47 1 1.2915 0.4503 3.9447 48 1 0.9174 -1.0320 2.0374 49 1 1.3231 -2.4558 3.0268 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096315728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:44 Heat of formation + Delta-G solvation = 35.525492 kcal Electronic energy + Delta-G solvation = -32868.398168 eV Core-core repulsion = 28569.262565 eV Total energy + Delta-G solvation = -4299.135603 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.53527 -39.46801 -38.67778 -36.91168 -35.89935 -34.47516 -34.05164 -32.84927 -31.83727 -31.13207 -30.92810 -29.61512 -27.61678 -26.47025 -24.82907 -23.92314 -22.99610 -22.51447 -21.81675 -20.51422 -19.10367 -18.50669 -18.05832 -17.63996 -16.77493 -16.51064 -16.27770 -15.82764 -15.39768 -15.09280 -14.85166 -14.64857 -14.42375 -14.19673 -14.08717 -13.76045 -13.59176 -13.44067 -13.23681 -13.12531 -12.92487 -12.85683 -12.71173 -12.36929 -12.13629 -11.97640 -11.72436 -11.65880 -11.31391 -11.27213 -11.20456 -11.18201 -11.09819 -10.82338 -10.55560 -10.45158 -10.39533 -10.10079 -10.07044 -9.75428 -9.22995 -8.97926 -8.67050 -8.42613 -8.22878 -8.20299 -6.62632 -3.98079 0.60284 1.43712 1.76801 3.00074 3.03670 3.18792 3.25144 3.26124 3.46675 3.67066 3.81643 3.86014 4.04311 4.47319 4.49274 4.61637 4.74745 4.79771 4.86202 4.90312 4.96837 5.02993 5.13617 5.13890 5.19934 5.27964 5.37004 5.39958 5.46596 5.49576 5.57771 5.67757 5.76173 5.82221 5.88261 5.89293 5.95903 6.02811 6.06187 6.10208 6.17377 6.34441 6.42293 6.46770 6.52856 6.56824 6.59795 6.62465 6.95256 7.39711 7.40787 7.80680 8.20077 8.22171 8.59590 8.93993 9.14398 9.68214 10.42204 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.002037 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.442768 B =13742.696532 C =14326.645202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.248 3.752 3 C 0.206 3.794 4 N -0.442 5.442 5 C -0.315 4.315 6 H 0.112 0.888 7 C 0.035 3.965 8 N -0.872 5.872 9 Si 0.919 3.081 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.456 3.544 14 O -0.573 6.573 15 C -0.101 4.101 16 C -0.111 4.111 17 C 0.112 3.888 18 N -0.603 5.603 19 C 0.541 3.459 20 O -0.531 6.531 21 C -0.212 4.212 22 C -0.027 4.027 23 C -0.070 4.070 24 C -0.101 4.101 25 C -0.135 4.135 26 C -0.111 4.111 27 C -0.132 4.132 28 C -0.037 4.037 29 C 0.109 3.891 30 C -0.128 4.128 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.274 0.726 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 5.342 19.877 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.069 4.069 3 C 0.079 3.921 4 N -0.162 5.162 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.169 4.169 8 N -0.511 5.511 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.244 3.756 14 O -0.456 6.456 15 C -0.123 4.123 16 C -0.149 4.149 17 C -0.010 4.010 18 N -0.336 5.336 19 C 0.331 3.669 20 O -0.410 6.410 21 C -0.232 4.232 22 C -0.047 4.047 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.153 4.153 26 C -0.129 4.129 27 C -0.150 4.150 28 C -0.055 4.055 29 C -0.014 4.014 30 C -0.167 4.167 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.911 4.679 20.147 20.886 hybrid contribution 0.572 -0.188 -1.430 1.551 sum -2.338 4.491 18.717 19.390 Atomic orbital electron populations 1.80928 1.13516 1.08731 1.12307 1.29442 0.95449 0.92219 0.89833 1.19298 0.81528 0.86530 1.04739 1.43769 1.56118 1.10594 1.05691 1.19730 1.43003 0.99659 0.81781 0.87056 1.25191 0.95614 0.96787 0.99280 1.69997 1.26740 1.27861 1.26517 0.86031 0.80668 0.78309 0.80470 1.20535 1.20580 1.19125 1.19901 0.84449 0.87279 0.83941 1.90546 1.47818 1.20737 1.86461 1.21226 0.95879 1.00561 0.94650 1.21691 0.99999 1.00910 0.92321 1.21681 0.80103 1.00357 0.98872 1.48117 1.07479 1.64670 1.13352 1.18420 0.88984 0.77796 0.81681 1.90875 1.59359 1.45897 1.44841 1.23167 0.95262 1.06388 0.98430 1.22410 0.98866 0.91777 0.91634 1.18877 0.96482 0.96695 0.94918 1.21149 0.99379 0.97257 0.94081 1.20929 0.96183 0.99585 0.98621 1.21160 0.97815 0.94888 0.99018 1.20937 0.99583 0.99035 0.95482 1.21027 0.92116 0.97486 0.94908 1.21756 0.93612 0.99102 0.86896 1.21860 0.95720 1.01767 0.97340 0.89875 0.84083 0.91569 0.89791 0.90333 0.90540 0.91503 0.88866 0.84571 0.84663 0.86307 0.86401 0.86563 0.86460 0.87031 0.89479 0.90978 0.89951 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.28 18.20 42.15 0.77 -9.51 16 2 C 0.25 5.04 11.74 -20.76 -0.24 4.80 16 3 C 0.21 3.86 4.97 -6.83 -0.03 3.82 16 4 N -0.44 -9.81 2.58 -117.93 -0.30 -10.11 16 5 C -0.32 -7.89 9.44 -14.93 -0.14 -8.04 16 6 H 0.11 3.01 7.31 -52.49 -0.38 2.62 16 7 C 0.03 0.82 4.96 -17.47 -0.09 0.74 16 8 N -0.87 -20.74 9.25 55.50 0.51 -20.23 16 9 Si 0.92 19.08 29.64 -169.99 -5.04 14.04 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.46 9.73 6.74 -10.99 -0.07 9.66 16 14 O -0.57 -14.47 15.69 5.55 0.09 -14.38 16 15 C -0.10 -1.60 1.83 -91.73 -0.17 -1.77 16 16 C -0.11 -1.64 4.84 -26.61 -0.13 -1.77 16 17 C 0.11 1.40 6.44 -3.71 -0.02 1.37 16 18 N -0.60 -7.55 2.98 -174.67 -0.52 -8.07 16 19 C 0.54 7.15 6.63 -12.96 -0.09 7.06 16 20 O -0.53 -8.36 11.66 5.19 0.06 -8.30 16 21 C -0.21 -2.21 9.24 -37.50 -0.35 -2.56 16 22 C -0.03 -0.26 9.81 -37.16 -0.36 -0.63 16 23 C -0.07 -0.80 4.51 -105.06 -0.47 -1.27 16 24 C -0.10 -1.06 9.80 -39.12 -0.38 -1.44 16 25 C -0.14 -1.35 10.03 -39.65 -0.40 -1.75 16 26 C -0.11 -1.12 10.04 -39.46 -0.40 -1.52 16 27 C -0.13 -1.45 10.03 -39.65 -0.40 -1.85 16 28 C -0.04 -0.44 6.63 -39.11 -0.26 -0.70 16 29 C 0.11 1.25 6.29 -3.93 -0.02 1.23 16 30 C -0.13 -1.92 5.31 -26.83 -0.14 -2.06 16 31 H 0.08 1.18 5.92 -51.93 -0.31 0.87 16 32 H 0.14 2.78 5.86 -51.93 -0.30 2.48 16 33 H 0.27 6.27 8.31 -40.82 -0.34 5.94 16 34 H 0.08 1.12 6.05 -51.93 -0.31 0.81 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.24 6.99 -51.93 -0.36 0.88 16 39 H 0.14 1.12 5.90 -52.49 -0.31 0.81 16 40 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.11 1.32 7.06 -52.49 -0.37 0.95 16 46 H 0.09 0.85 5.37 -51.93 -0.28 0.57 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.37 5.15 -51.93 -0.27 1.10 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -31.71 395.30 -8.90 -40.61 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.25 Total: 6.68 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -4.17 Total: 3.32 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.46 Total: -47.92 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.15 Total: -22.68 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.04 Total: 14.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.71 -8.90 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096315728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.131 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds