Wall clock time and date at job start Tue Mar 31 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47505 * 357.04659 * 3 2 1 5 5 C 1.37098 * 119.99980 * 89.02535 * 4 3 2 6 6 H 1.07999 * 120.00227 * 180.09762 * 5 4 3 7 7 C 1.38952 * 119.99887 * 0.10898 * 5 4 3 8 8 N 1.31414 * 119.99638 * 331.70962 * 7 5 4 9 9 Si 1.86800 * 120.00076 * 151.71686 * 7 5 4 10 10 H 1.48506 * 109.46977 * 94.99518 * 9 7 5 11 11 H 1.48497 * 109.47028 * 214.98887 * 9 7 5 12 12 H 1.48496 * 109.47314 * 334.99171 * 9 7 5 13 13 C 1.34771 * 120.00358 * 269.03100 * 4 3 2 14 14 O 1.21291 * 120.00342 * 184.87094 * 13 4 3 15 15 C 1.50704 * 120.00022 * 4.86639 * 13 4 3 16 16 C 1.53032 * 109.46290 * 203.23574 * 15 13 4 17 17 C 1.53197 * 109.31486 * 178.62868 * 16 15 13 18 18 N 1.46928 * 108.77495 * 54.62959 * 17 16 15 19 19 C 1.34775 * 120.62654 * 126.37001 * 18 17 16 20 20 O 1.21699 * 120.00296 * 354.80744 * 19 18 17 21 21 C 1.46431 * 120.00141 * 174.80649 * 19 18 17 22 22 C 1.34804 * 120.00045 * 188.11776 * 21 19 18 23 23 C 1.47208 * 120.00234 * 10.69983 * 22 21 19 24 24 C 1.39833 * 120.16994 * 224.13644 * 23 22 21 25 25 C 1.37881 * 119.82572 * 180.02562 * 24 23 22 26 26 C 1.38403 * 120.17601 * 359.97438 * 25 24 23 27 27 C 1.38405 * 120.33881 * 0.02564 * 26 25 24 28 28 C 1.37892 * 120.17300 * 359.97438 * 27 26 25 29 29 C 1.46923 * 118.74285 * 306.65032 * 18 17 16 30 30 C 1.52764 * 109.00929 * 53.30372 * 29 18 17 31 31 H 1.09005 * 109.47339 * 237.04299 * 3 2 1 32 32 H 1.09004 * 109.47281 * 117.05156 * 3 2 1 33 33 H 0.96999 * 119.99583 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.45531 * 323.21235 * 15 13 4 35 35 H 1.09006 * 109.49893 * 58.67754 * 16 15 13 36 36 H 1.09000 * 109.49581 * 298.57786 * 16 15 13 37 37 H 1.09001 * 109.58584 * 294.84872 * 17 16 15 38 38 H 1.08994 * 109.70649 * 174.49239 * 17 16 15 39 39 H 1.08000 * 119.99325 * 8.12694 * 21 19 18 40 40 H 1.08008 * 119.99866 * 190.69419 * 22 21 19 41 41 H 1.08000 * 120.08379 * 0.04751 * 24 23 22 42 42 H 1.08006 * 119.91648 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.83364 * 179.74076 * 26 25 24 44 44 H 1.08000 * 119.91227 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.08282 * 179.97438 * 28 27 26 46 46 H 1.08991 * 109.59015 * 173.14200 * 29 18 17 47 47 H 1.09004 * 109.58253 * 293.57095 * 29 18 17 48 48 H 1.09003 * 109.56397 * 185.55661 * 30 29 18 49 49 H 1.09002 * 109.35727 * 65.49994 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.3784 0.0712 5 6 3.3068 -2.0916 -1.0808 6 1 3.6658 -3.1089 -1.0283 7 6 3.0577 -1.5056 -2.3158 8 7 2.1505 -0.5611 -2.4239 9 14 4.0124 -2.0606 -3.8225 10 1 3.2309 -3.0918 -4.5514 11 1 4.2496 -0.8973 -4.7143 12 1 5.3152 -2.6340 -3.3995 13 6 3.3405 -1.9462 1.2689 14 8 3.8284 -3.0551 1.3266 15 6 3.0067 -1.2031 2.5369 16 6 3.8610 -1.7447 3.6852 17 6 3.5437 -0.9641 4.9647 18 7 2.0962 -1.0245 5.2088 19 6 1.6170 -1.4506 6.3942 20 8 2.3796 -1.8788 7.2404 21 6 0.1787 -1.3983 6.6640 22 6 -0.2854 -1.6680 7.9006 23 6 0.6521 -1.7827 9.0298 24 6 0.5154 -2.8234 9.9537 25 6 1.3971 -2.9238 11.0090 26 6 2.4157 -1.9983 11.1549 27 6 2.5575 -0.9654 10.2447 28 6 1.6838 -0.8515 9.1840 29 6 1.1808 -0.6175 4.1340 30 6 1.5247 -1.3967 2.8659 31 1 2.9711 0.5599 0.8623 32 1 2.9711 0.4682 -0.9153 33 1 1.9764 -0.1523 -3.2861 34 1 3.2127 -0.1414 2.4004 35 1 4.9166 -1.6277 3.4400 36 1 3.6374 -2.8005 3.8384 37 1 3.8509 0.0748 4.8445 38 1 4.0752 -1.4071 5.8068 39 1 -0.5103 -1.1437 5.8722 40 1 -1.3450 -1.7998 8.0629 41 1 -0.2785 -3.5469 9.8407 42 1 1.2926 -3.7268 11.7237 43 1 3.1007 -2.0797 11.9859 44 1 3.3546 -0.2467 10.3654 45 1 1.7955 -0.0447 8.4748 46 1 0.1537 -0.8342 4.4271 47 1 1.2915 0.4503 3.9447 48 1 0.9174 -1.0320 2.0374 49 1 1.3231 -2.4558 3.0268 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096315728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:43 Heat of formation + Delta-G solvation = 18.844638 kcal Electronic energy + Delta-G solvation = -32869.121504 eV Core-core repulsion = 28569.262565 eV Total energy + Delta-G solvation = -4299.858939 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.61485 -40.78290 -39.66089 -38.10128 -37.57022 -36.18607 -34.85251 -34.19968 -33.47005 -32.21126 -31.72009 -30.43250 -29.24580 -27.79593 -26.23180 -25.00760 -24.02350 -23.31406 -22.86884 -21.61329 -20.47416 -19.83203 -19.40760 -18.65020 -18.15765 -17.87716 -17.55331 -16.71843 -16.62633 -16.29483 -16.03775 -15.89080 -15.59702 -15.52685 -15.16706 -14.99545 -14.74353 -14.59408 -14.44987 -14.28053 -14.23704 -13.85236 -13.65996 -13.60321 -13.48784 -13.36277 -13.17367 -13.08171 -12.89721 -12.70598 -12.36420 -12.22149 -12.21198 -12.09463 -12.01831 -11.95231 -11.66947 -11.47017 -11.02811 -10.90585 -10.68041 -10.34818 -10.01253 -9.80410 -9.44120 -9.04100 -8.45980 -5.87719 -0.18118 0.64545 0.98142 1.34761 1.47842 1.58938 1.81161 2.02913 2.06598 2.26160 2.33149 2.36132 2.92108 3.03169 3.10120 3.52148 3.62153 3.70898 3.82378 3.89053 3.91748 4.06242 4.08289 4.16970 4.20009 4.30727 4.33595 4.39692 4.45654 4.61080 4.63041 4.71686 4.73420 4.77001 4.79386 4.86826 4.96257 5.04101 5.09158 5.13932 5.14479 5.25850 5.30892 5.34104 5.49528 5.58508 5.65238 5.69647 5.75811 5.99799 6.19819 6.40689 6.45757 6.99252 7.12363 7.24207 7.37208 7.94534 8.56476 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.002037 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.442768 B =13742.696532 C =14326.645202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.258 3.742 3 C 0.207 3.793 4 N -0.452 5.452 5 C -0.349 4.349 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.878 5.878 9 Si 0.974 3.026 10 H -0.286 1.286 11 H -0.264 1.264 12 H -0.275 1.275 13 C 0.448 3.552 14 O -0.623 6.623 15 C -0.091 4.091 16 C -0.103 4.103 17 C 0.120 3.880 18 N -0.606 5.606 19 C 0.533 3.467 20 O -0.563 6.563 21 C -0.225 4.225 22 C -0.017 4.017 23 C -0.089 4.089 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.120 4.120 27 C -0.148 4.148 28 C -0.053 4.053 29 C 0.115 3.885 30 C -0.121 4.121 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.278 0.722 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 7.322 20.784 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.059 4.059 3 C 0.081 3.919 4 N -0.171 5.171 5 C -0.476 4.476 6 H 0.095 0.905 7 C -0.188 4.188 8 N -0.516 5.516 9 Si 0.799 3.201 10 H -0.213 1.213 11 H -0.188 1.188 12 H -0.199 1.199 13 C 0.239 3.761 14 O -0.509 6.509 15 C -0.112 4.112 16 C -0.141 4.141 17 C -0.002 4.002 18 N -0.338 5.338 19 C 0.326 3.674 20 O -0.444 6.444 21 C -0.245 4.245 22 C -0.036 4.036 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.161 4.161 26 C -0.138 4.138 27 C -0.166 4.166 28 C -0.071 4.071 29 C -0.007 4.007 30 C -0.160 4.160 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.742 6.702 21.041 22.397 hybrid contribution 0.840 -0.888 -1.692 2.088 sum -2.902 5.813 19.349 20.410 Atomic orbital electron populations 1.80929 1.14308 1.09459 1.13284 1.29700 0.95697 0.91466 0.89039 1.19529 0.80547 0.84995 1.06870 1.43889 1.56183 1.11787 1.05229 1.19510 1.45115 0.99240 0.83722 0.90473 1.25688 0.95613 0.96837 1.00699 1.70047 1.26447 1.27924 1.27223 0.85230 0.78909 0.78130 0.77840 1.21286 1.18828 1.19946 1.20914 0.82861 0.87016 0.85325 1.90513 1.49774 1.23237 1.87389 1.21236 0.96650 1.01641 0.91695 1.21596 0.99975 0.99193 0.93378 1.21609 0.80436 1.01469 0.96723 1.48194 1.07512 1.64515 1.13538 1.18937 0.90079 0.77029 0.81406 1.90863 1.60409 1.47297 1.45848 1.23251 0.93861 1.07814 0.99606 1.22765 1.00189 0.89947 0.90729 1.19195 0.96938 0.96964 0.95850 1.21476 1.00071 0.97445 0.94045 1.21285 0.95876 1.00045 0.98941 1.21477 0.98285 0.94585 0.99440 1.21197 0.99920 0.99780 0.95717 1.21111 0.92856 0.97898 0.95254 1.21837 0.94400 0.99889 0.84544 1.21779 0.94606 1.00726 0.98931 0.84586 0.84779 0.91148 0.86103 0.90161 0.94147 0.88307 0.90000 0.82178 0.81356 0.84488 0.84266 0.84554 0.85468 0.87646 0.87421 0.88069 0.91171 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.95 18.20 20.00 0.36 -20.59 16 2 C 0.26 10.08 11.74 89.44 1.05 11.13 16 3 C 0.21 7.35 4.97 84.57 0.42 7.77 16 4 N -0.45 -20.08 2.58 -645.42 -1.67 -21.75 16 5 C -0.35 -17.90 9.44 84.04 0.79 -17.11 16 6 H 0.08 4.41 7.31 -2.91 -0.02 4.39 16 7 C 0.01 0.70 4.96 84.93 0.42 1.12 16 8 N -0.88 -40.99 9.25 21.66 0.20 -40.79 16 9 Si 0.97 39.16 29.64 68.60 2.03 41.19 16 10 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 C 0.45 19.41 6.74 87.66 0.59 20.00 16 14 O -0.62 -33.00 15.69 -3.06 -0.05 -33.05 16 15 C -0.09 -2.76 1.83 -11.51 -0.02 -2.78 16 16 C -0.10 -3.01 4.84 30.67 0.15 -2.86 16 17 C 0.12 2.80 6.44 86.36 0.56 3.36 16 18 N -0.61 -14.02 2.98 -824.74 -2.46 -16.47 16 19 C 0.53 13.46 6.63 86.38 0.57 14.03 16 20 O -0.56 -17.62 11.66 -4.34 -0.05 -17.68 16 21 C -0.23 -4.21 9.24 23.62 0.22 -3.99 16 22 C -0.02 -0.29 9.81 23.84 0.23 -0.06 16 23 C -0.09 -1.94 4.51 -20.15 -0.09 -2.03 16 24 C -0.11 -2.22 9.80 22.57 0.22 -2.00 16 25 C -0.14 -2.69 10.03 22.22 0.22 -2.47 16 26 C -0.12 -2.32 10.04 22.35 0.22 -2.10 16 27 C -0.15 -3.20 10.03 22.23 0.22 -2.98 16 28 C -0.05 -1.24 6.63 22.57 0.15 -1.09 16 29 C 0.12 2.31 6.29 86.22 0.54 2.85 16 30 C -0.12 -3.49 5.31 30.53 0.16 -3.32 16 31 H 0.14 3.31 5.92 -2.38 -0.01 3.30 16 32 H 0.13 5.05 5.86 -2.39 -0.01 5.04 16 33 H 0.28 12.36 8.31 -92.71 -0.77 11.59 16 34 H 0.12 2.76 6.05 -2.39 -0.01 2.75 16 35 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.04 1.46 7.93 -2.39 -0.02 1.45 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.15 6.99 -2.39 -0.02 2.13 16 39 H 0.16 2.11 5.90 -2.91 -0.02 2.09 16 40 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 45 H 0.11 2.48 7.06 -2.91 -0.02 2.46 16 46 H 0.11 1.74 5.37 -2.39 -0.01 1.73 16 47 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.07 2.22 5.15 -2.39 -0.01 2.21 16 49 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -72.70 395.30 6.01 -66.69 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.99 Total: 24.98 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.64 Total: 17.46 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -3.56 Total: -99.60 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.10 Total: -50.72 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -72.70 6.01 -66.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096315728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.534 kcal (2) G-P(sol) polarization free energy of solvation -72.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds