Wall clock time and date at job start Tue Mar 31 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48499 * 109.47428 * 239.99865 * 3 2 1 5 5 H 1.48497 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46758 * 120.00178 * 3 2 1 7 7 C 1.37881 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00126 * 90.00237 * 10 9 7 12 12 O 1.21720 * 120.00213 * 184.98636 * 11 10 9 13 13 C 1.46394 * 119.99950 * 4.97781 * 11 10 9 14 14 C 1.34827 * 119.99736 * 173.20182 * 13 11 10 15 15 C 1.47208 * 120.00110 * 349.20788 * 14 13 11 16 16 C 1.40267 * 120.58390 * 136.47140 * 15 14 13 17 17 C 1.38285 * 118.26622 * 179.97438 * 16 15 14 18 18 C 1.38389 * 119.33338 * 0.02562 * 17 16 15 19 19 N 1.31935 * 121.13987 * 0.02562 * 18 17 16 20 20 C 1.31663 * 121.90661 * 359.67915 * 19 18 17 21 21 C 1.39993 * 120.00078 * 269.99809 * 10 9 7 22 22 C 1.38874 * 120.01980 * 113.03600 * 21 10 9 23 23 C 1.38129 * 120.03179 * 179.77567 * 22 21 10 24 24 C 1.38711 * 120.16143 * 0.56454 * 23 22 21 25 25 C 1.38999 * 119.94444 * 359.62338 * 24 23 22 26 26 C 1.38640 * 119.88137 * 0.12324 * 25 24 23 27 27 O 1.36115 * 120.78371 * 180.26590 * 25 24 23 28 28 C 1.43163 * 116.73216 * 342.80189 * 27 25 24 29 29 C 1.53464 * 108.24673 * 46.19378 * 28 27 25 30 30 O 1.36217 * 119.31137 * 179.53660 * 24 23 22 31 31 H 0.96992 * 120.00200 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47188 * 60.00269 * 9 7 2 33 33 H 1.09008 * 109.47246 * 300.00098 * 9 7 2 34 34 H 1.07995 * 120.00181 * 352.92653 * 13 11 10 35 35 H 1.07998 * 120.00001 * 169.20717 * 14 13 11 36 36 H 1.08006 * 120.86749 * 359.96302 * 16 15 14 37 37 H 1.08001 * 120.33104 * 180.02562 * 17 16 15 38 38 H 1.08000 * 119.42914 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.73938 * 180.31708 * 20 19 18 40 40 H 1.07999 * 119.98346 * 0.04341 * 22 21 10 41 41 H 1.08000 * 119.91396 * 180.26893 * 23 22 21 42 42 H 1.08007 * 119.98687 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.70753 * 165.87877 * 28 27 25 44 44 H 1.08996 * 109.70894 * 286.50625 * 28 27 25 45 45 H 1.08998 * 109.71368 * 59.91305 * 29 28 27 46 46 H 1.09007 * 109.71414 * 180.54688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6410 -4.1249 1.1667 12 8 3.4994 -4.9879 1.1687 13 6 2.0844 -3.6432 2.4321 14 6 2.4197 -4.2479 3.5896 15 6 3.1476 -5.5272 3.5677 16 6 4.2248 -5.7504 4.4380 17 6 4.8742 -6.9697 4.3771 18 6 4.4455 -7.9215 3.4685 19 7 3.4297 -7.6847 2.6606 20 6 2.7745 -6.5429 2.6826 21 6 2.6580 -4.1447 -1.2129 22 6 3.9896 -3.9994 -1.5794 23 6 4.4397 -4.5283 -2.7734 24 6 3.5618 -5.1954 -3.6150 25 6 2.2275 -5.3391 -3.2529 26 6 1.7772 -4.8127 -2.0520 27 8 1.3526 -5.9952 -4.0633 28 6 1.7533 -6.1842 -5.4246 29 6 3.2034 -6.6863 -5.4334 30 8 4.0222 -5.7019 -4.7927 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 1.4087 -2.8008 2.4389 35 1 2.1542 -3.7937 4.5327 36 1 4.5390 -4.9896 5.1372 37 1 5.7075 -7.1772 5.0321 38 1 4.9518 -8.8742 3.4193 39 1 1.9446 -6.3883 2.0089 40 1 4.6745 -3.4763 -0.9285 41 1 5.4766 -4.4179 -3.0544 42 1 0.7407 -4.9231 -1.7691 43 1 1.1061 -6.9217 -5.8993 44 1 1.6887 -5.2378 -5.9615 45 1 3.2693 -7.6291 -4.8905 46 1 3.5368 -6.8293 -6.4613 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096405715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:32 Heat of formation + Delta-G solvation = -2.698438 kcal Electronic energy + Delta-G solvation = -32763.021310 eV Core-core repulsion = 28391.821009 eV Total energy + Delta-G solvation = -4371.200301 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07129 -40.17272 -39.26962 -37.28377 -37.07665 -34.96796 -33.93812 -32.64948 -31.86925 -30.88746 -30.28129 -29.48234 -28.16190 -26.98519 -24.94409 -24.04341 -23.29446 -23.14805 -22.47587 -21.68277 -20.32301 -18.68448 -18.15961 -17.46358 -17.16329 -16.84167 -16.53596 -16.38637 -15.89391 -15.71526 -15.24476 -14.90653 -14.72576 -14.43401 -14.32010 -14.24846 -13.87400 -13.60222 -13.56363 -13.29598 -13.15203 -12.88364 -12.82885 -12.41721 -12.38817 -12.21624 -11.70564 -11.64623 -11.37606 -11.13037 -11.02101 -10.92101 -10.73790 -10.40436 -10.23263 -9.99696 -9.88389 -9.57958 -9.37146 -8.97248 -8.61603 -8.46608 -8.11240 -7.95114 -7.48327 -6.24254 -4.31675 0.90270 1.57206 1.60808 1.64917 2.07486 3.12055 3.21958 3.26204 3.26901 3.30422 3.69659 3.89733 4.03497 4.17406 4.26185 4.30356 4.70573 4.78031 4.82930 4.85725 5.00100 5.04602 5.09657 5.14787 5.19251 5.20352 5.38339 5.41076 5.54895 5.58055 5.69821 5.75762 5.81068 6.03354 6.06501 6.15443 6.26676 6.30955 6.39542 6.55327 6.60522 6.61386 6.81994 6.91696 6.98745 7.04057 7.10100 7.46681 7.64237 7.71361 7.95448 8.09204 8.30568 8.69229 8.85308 9.35839 10.82553 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.005486 B = 0.004675 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5103.122535 B = 5988.321978 C =10020.880075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.548 5.548 11 C 0.544 3.456 12 O -0.546 6.546 13 C -0.168 4.168 14 C -0.058 4.058 15 C -0.105 4.105 16 C -0.067 4.067 17 C -0.190 4.190 18 C 0.095 3.905 19 N -0.494 5.494 20 C 0.182 3.818 21 C 0.180 3.820 22 C -0.094 4.094 23 C -0.105 4.105 24 C 0.036 3.964 25 C 0.058 3.942 26 C -0.117 4.117 27 O -0.308 6.308 28 C 0.022 3.978 29 C 0.021 3.979 30 O -0.310 6.310 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -11.926 -0.741 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.275 5.275 11 C 0.336 3.664 12 O -0.426 6.426 13 C -0.188 4.188 14 C -0.078 4.078 15 C -0.107 4.107 16 C -0.092 4.092 17 C -0.210 4.210 18 C -0.060 4.060 19 N -0.204 5.204 20 C 0.024 3.976 21 C 0.089 3.911 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.008 4.008 25 C 0.013 3.987 26 C -0.137 4.137 27 O -0.222 6.222 28 C -0.054 4.054 29 C -0.055 4.055 30 O -0.225 6.225 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.355 -12.892 -1.381 13.678 hybrid contribution 0.653 1.916 0.207 2.035 sum 5.008 -10.976 -1.174 12.121 Atomic orbital electron populations 1.69902 1.05969 1.27580 1.49386 1.24905 0.94856 0.99244 0.94573 0.86554 0.79582 0.82457 0.78920 1.20068 1.21081 1.20016 1.21391 0.93640 0.90190 1.52459 0.92018 1.19672 0.87302 0.81950 0.99258 1.45867 1.45222 1.34135 1.02247 1.18476 0.82218 0.81288 0.84420 1.90812 1.32182 1.32438 1.87204 1.23371 1.01261 1.02619 0.91594 1.22170 0.95185 0.92534 0.97948 1.19932 0.97620 0.95395 0.97722 1.21564 0.93997 0.96630 0.97051 1.21856 1.02009 0.95138 1.01950 1.22653 0.93157 0.98786 0.91453 1.67575 1.08068 1.22519 1.22209 1.22691 0.96421 0.87070 0.91450 1.17087 0.91894 0.94854 0.87315 1.21004 0.95582 0.99356 0.95418 1.20196 0.98953 1.00371 0.92894 1.18778 0.91341 1.02185 0.88543 1.18483 0.87391 0.99694 0.93164 1.20349 1.00947 0.99056 0.93352 1.86292 1.42430 1.73062 1.20444 1.23568 0.96581 1.02886 0.82400 1.23558 0.91065 0.91269 0.99566 1.86298 1.47106 1.55474 1.33637 0.92346 0.94102 0.93548 0.83073 0.84572 0.85297 0.85481 0.83648 0.83921 0.85156 0.84952 0.84672 0.86435 0.90616 0.90753 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.29 55.43 0.74 -23.07 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.63 9.39 -34.44 -0.32 -13.96 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.42 4.89 -5.20 -0.03 5.40 16 10 N -0.55 -11.43 2.51 -116.29 -0.29 -11.72 16 11 C 0.54 10.84 6.54 -12.98 -0.08 10.76 16 12 O -0.55 -11.57 11.68 5.17 0.06 -11.51 16 13 C -0.17 -2.89 9.10 -37.51 -0.34 -3.23 16 14 C -0.06 -0.84 9.84 -37.15 -0.37 -1.21 16 15 C -0.10 -1.62 4.55 -104.91 -0.48 -2.10 16 16 C -0.07 -0.90 9.95 -38.80 -0.39 -1.29 16 17 C -0.19 -2.38 10.09 -39.51 -0.40 -2.78 16 18 C 0.09 1.33 11.17 -17.45 -0.19 1.14 16 19 N -0.49 -8.49 10.34 -12.83 -0.13 -8.62 16 20 C 0.18 3.14 7.78 -17.04 -0.13 3.01 16 21 C 0.18 3.66 4.87 -83.69 -0.41 3.25 16 22 C -0.09 -1.81 9.30 -39.39 -0.37 -2.17 16 23 C -0.10 -1.81 9.95 -39.45 -0.39 -2.20 16 24 C 0.04 0.61 6.49 -39.12 -0.25 0.36 16 25 C 0.06 1.02 6.49 -39.15 -0.25 0.77 16 26 C -0.12 -2.22 9.55 -39.23 -0.37 -2.60 16 27 O -0.31 -4.79 10.42 -32.89 -0.34 -5.14 16 28 C 0.02 0.23 7.26 37.40 0.27 0.50 16 29 C 0.02 0.22 7.26 37.40 0.27 0.49 16 30 O -0.31 -4.61 10.42 -33.21 -0.35 -4.95 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.04 1.00 7.82 -51.93 -0.41 0.60 16 33 H 0.05 1.05 5.99 -51.92 -0.31 0.74 16 34 H 0.15 2.64 6.21 -52.49 -0.33 2.31 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.14 2.54 7.02 -52.48 -0.37 2.17 16 40 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 41 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 43 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -31.55 391.57 -9.38 -40.92 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.61 Total: 7.18 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.33 Total: -4.21 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.31 Total: -43.41 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.63 Total: -21.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.55 -9.38 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.224 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds