Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99806 * 2 1 4 4 H 1.48499 * 109.47428 * 239.99865 * 3 2 1 5 5 H 1.48497 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46758 * 120.00178 * 3 2 1 7 7 C 1.37881 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00126 * 90.00237 * 10 9 7 12 12 O 1.21720 * 120.00213 * 184.98636 * 11 10 9 13 13 C 1.46394 * 119.99950 * 4.97781 * 11 10 9 14 14 C 1.34827 * 119.99736 * 173.20182 * 13 11 10 15 15 C 1.47208 * 120.00110 * 349.20788 * 14 13 11 16 16 C 1.40267 * 120.58390 * 136.47140 * 15 14 13 17 17 C 1.38285 * 118.26622 * 179.97438 * 16 15 14 18 18 C 1.38389 * 119.33338 * 0.02562 * 17 16 15 19 19 N 1.31935 * 121.13987 * 0.02562 * 18 17 16 20 20 C 1.31663 * 121.90661 * 359.67915 * 19 18 17 21 21 C 1.39993 * 120.00078 * 269.99809 * 10 9 7 22 22 C 1.38874 * 120.01980 * 113.03600 * 21 10 9 23 23 C 1.38129 * 120.03179 * 179.77567 * 22 21 10 24 24 C 1.38711 * 120.16143 * 0.56454 * 23 22 21 25 25 C 1.38999 * 119.94444 * 359.62338 * 24 23 22 26 26 C 1.38640 * 119.88137 * 0.12324 * 25 24 23 27 27 O 1.36115 * 120.78371 * 180.26590 * 25 24 23 28 28 C 1.43163 * 116.73216 * 342.80189 * 27 25 24 29 29 C 1.53464 * 108.24673 * 46.19378 * 28 27 25 30 30 O 1.36217 * 119.31137 * 179.53660 * 24 23 22 31 31 H 0.96992 * 120.00200 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47188 * 60.00269 * 9 7 2 33 33 H 1.09008 * 109.47246 * 300.00098 * 9 7 2 34 34 H 1.07995 * 120.00181 * 352.92653 * 13 11 10 35 35 H 1.07998 * 120.00001 * 169.20717 * 14 13 11 36 36 H 1.08006 * 120.86749 * 359.96302 * 16 15 14 37 37 H 1.08001 * 120.33104 * 180.02562 * 17 16 15 38 38 H 1.08000 * 119.42914 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.73938 * 180.31708 * 20 19 18 40 40 H 1.07999 * 119.98346 * 0.04341 * 22 21 10 41 41 H 1.08000 * 119.91396 * 180.26893 * 23 22 21 42 42 H 1.08007 * 119.98687 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.70753 * 165.87877 * 28 27 25 44 44 H 1.08996 * 109.70894 * 286.50625 * 28 27 25 45 45 H 1.08998 * 109.71368 * 59.91305 * 29 28 27 46 46 H 1.09007 * 109.71414 * 180.54688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6410 -4.1249 1.1667 12 8 3.4994 -4.9879 1.1687 13 6 2.0844 -3.6432 2.4321 14 6 2.4197 -4.2479 3.5896 15 6 3.1476 -5.5272 3.5677 16 6 4.2248 -5.7504 4.4380 17 6 4.8742 -6.9697 4.3771 18 6 4.4455 -7.9215 3.4685 19 7 3.4297 -7.6847 2.6606 20 6 2.7745 -6.5429 2.6826 21 6 2.6580 -4.1447 -1.2129 22 6 3.9896 -3.9994 -1.5794 23 6 4.4397 -4.5283 -2.7734 24 6 3.5618 -5.1954 -3.6150 25 6 2.2275 -5.3391 -3.2529 26 6 1.7772 -4.8127 -2.0520 27 8 1.3526 -5.9952 -4.0633 28 6 1.7533 -6.1842 -5.4246 29 6 3.2034 -6.6863 -5.4334 30 8 4.0222 -5.7019 -4.7927 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 1.4087 -2.8008 2.4389 35 1 2.1542 -3.7937 4.5327 36 1 4.5390 -4.9896 5.1372 37 1 5.7075 -7.1772 5.0321 38 1 4.9518 -8.8742 3.4193 39 1 1.9446 -6.3883 2.0089 40 1 4.6745 -3.4763 -0.9285 41 1 5.4766 -4.4179 -3.0544 42 1 0.7407 -4.9231 -1.7691 43 1 1.1061 -6.9217 -5.8993 44 1 1.6887 -5.2378 -5.9615 45 1 3.2693 -7.6291 -4.8905 46 1 3.5368 -6.8293 -6.4613 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096405715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -20.532800 kcal Electronic energy + Delta-G solvation = -32763.794666 eV Core-core repulsion = 28391.821009 eV Total energy + Delta-G solvation = -4371.973656 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31697 -41.49488 -40.55532 -38.65083 -38.25544 -36.55937 -35.22493 -34.52130 -32.99505 -32.04123 -31.63859 -30.68202 -29.65719 -28.61410 -26.16115 -25.23066 -25.07756 -24.31251 -23.83021 -22.97663 -21.54174 -19.96406 -19.47741 -18.78832 -18.69573 -18.16778 -18.05516 -17.72928 -17.22849 -16.99758 -16.46509 -16.41808 -16.00751 -15.77104 -15.69289 -15.40196 -15.13846 -14.93417 -14.82579 -14.62130 -14.37302 -14.29288 -14.06206 -13.90263 -13.73812 -13.54355 -13.36488 -13.05501 -12.83888 -12.67280 -12.52910 -12.29554 -12.04864 -11.95422 -11.77919 -11.51702 -11.24669 -10.98302 -10.60369 -10.51850 -10.19495 -9.95471 -9.57788 -9.19484 -8.92963 -8.21085 -6.35793 -0.32244 0.16185 0.22948 0.50393 0.85929 1.42349 1.43377 1.51043 1.92699 2.08245 2.26549 2.42398 2.50122 2.61026 3.02246 3.09329 3.26908 3.58716 3.63602 3.80581 3.86996 3.95877 4.02472 4.07324 4.10844 4.13790 4.17321 4.29711 4.34721 4.45689 4.57728 4.60660 4.65856 4.70157 4.76997 4.91075 4.98091 5.01844 5.04364 5.16160 5.19286 5.30394 5.38308 5.43953 5.46419 5.67471 5.83917 5.88081 5.96683 6.02232 6.36654 6.45880 6.75116 7.15452 7.25877 7.37344 8.84238 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.005486 B = 0.004675 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5103.122535 B = 5988.321978 C =10020.880075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.254 3.746 10 N -0.554 5.554 11 C 0.541 3.459 12 O -0.564 6.564 13 C -0.206 4.206 14 C -0.017 4.017 15 C -0.127 4.127 16 C -0.064 4.064 17 C -0.180 4.180 18 C 0.084 3.916 19 N -0.528 5.528 20 C 0.161 3.839 21 C 0.154 3.846 22 C -0.110 4.110 23 C -0.103 4.103 24 C 0.040 3.960 25 C 0.059 3.941 26 C -0.135 4.135 27 O -0.323 6.323 28 C 0.012 3.988 29 C 0.015 3.985 30 O -0.317 6.317 31 H 0.269 0.731 32 H 0.016 0.984 33 H 0.046 0.954 34 H 0.144 0.856 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.129 0.871 43 H 0.158 0.842 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -12.611 -0.341 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.069 0.931 9 C 0.135 3.865 10 N -0.280 5.280 11 C 0.335 3.665 12 O -0.445 6.445 13 C -0.226 4.226 14 C -0.037 4.037 15 C -0.129 4.129 16 C -0.089 4.089 17 C -0.199 4.199 18 C -0.071 4.071 19 N -0.238 5.238 20 C 0.003 3.997 21 C 0.062 3.938 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.006 4.006 25 C 0.014 3.986 26 C -0.156 4.156 27 O -0.238 6.238 28 C -0.063 4.063 29 C -0.060 4.060 30 O -0.232 6.232 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.195 0.805 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.191 0.809 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.175 0.825 42 H 0.147 0.853 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.269 -13.596 -0.995 15.005 hybrid contribution 0.111 1.882 0.019 1.886 sum 6.380 -11.714 -0.976 13.375 Atomic orbital electron populations 1.69993 1.07111 1.28352 1.50188 1.25588 0.95562 1.02089 0.94221 0.85648 0.78483 0.78945 0.78876 1.20311 1.20414 1.19199 1.21546 0.93184 0.91391 1.52244 0.93130 1.19275 0.87250 0.82170 0.97839 1.45790 1.45197 1.33909 1.03111 1.18916 0.81929 0.80785 0.84888 1.90785 1.33094 1.33138 1.87496 1.23171 1.03939 1.04121 0.91369 1.22598 0.91575 0.91012 0.98479 1.20079 0.99137 0.95243 0.98487 1.22017 0.92684 0.97790 0.96434 1.22308 1.02248 0.94057 1.01313 1.23254 0.92321 1.00491 0.91067 1.67509 1.09558 1.22908 1.23812 1.22472 0.96752 0.88310 0.92160 1.17358 0.92742 0.96043 0.87633 1.21001 0.95107 1.00456 0.96452 1.20425 1.00187 0.99522 0.92077 1.18812 0.90880 1.01606 0.89253 1.18504 0.88083 0.99103 0.92952 1.20396 1.00647 1.00109 0.94400 1.86272 1.42579 1.72373 1.22550 1.24035 0.97850 1.04402 0.79983 1.23995 0.90363 0.90155 1.01477 1.86288 1.48146 1.56321 1.32408 0.92188 0.96589 0.93648 0.83837 0.80484 0.81984 0.81405 0.80851 0.86323 0.86089 0.82525 0.85301 0.82420 0.90272 0.90275 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.29 21.45 0.28 -49.98 16 2 C 0.03 1.37 5.46 84.66 0.46 1.84 16 3 Si 0.96 41.88 29.54 68.60 2.03 43.90 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.55 -28.76 9.39 25.60 0.24 -28.52 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.25 12.46 4.89 85.63 0.42 12.88 16 10 N -0.55 -24.84 2.51 -640.02 -1.61 -26.45 16 11 C 0.54 22.94 6.54 86.37 0.57 23.50 16 12 O -0.56 -25.14 11.68 -4.41 -0.05 -25.19 16 13 C -0.21 -7.35 9.10 23.61 0.21 -7.13 16 14 C -0.02 -0.47 9.84 23.84 0.23 -0.24 16 15 C -0.13 -3.87 4.55 -20.05 -0.09 -3.96 16 16 C -0.06 -1.54 9.95 22.77 0.23 -1.31 16 17 C -0.18 -3.94 10.09 22.32 0.23 -3.71 16 18 C 0.08 2.22 11.17 84.71 0.95 3.16 16 19 N -0.53 -18.36 10.34 -194.52 -2.01 -20.37 16 20 C 0.16 5.74 7.78 85.10 0.66 6.40 16 21 C 0.15 6.69 4.87 38.12 0.19 6.87 16 22 C -0.11 -4.48 9.30 22.40 0.21 -4.27 16 23 C -0.10 -3.61 9.95 22.36 0.22 -3.39 16 24 C 0.04 1.35 6.49 22.57 0.15 1.50 16 25 C 0.06 2.15 6.49 22.55 0.15 2.30 16 26 C -0.14 -5.52 9.55 22.50 0.21 -5.31 16 27 O -0.32 -10.01 10.42 -82.64 -0.86 -10.88 16 28 C 0.01 0.23 7.26 72.14 0.52 0.75 16 29 C 0.01 0.27 7.26 72.14 0.52 0.79 16 30 O -0.32 -8.86 10.42 -83.81 -0.87 -9.74 16 31 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.02 0.85 7.82 -2.39 -0.02 0.83 16 33 H 0.05 2.21 5.99 -2.38 -0.01 2.20 16 34 H 0.14 5.29 6.21 -2.91 -0.02 5.27 16 35 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.12 4.63 7.02 -2.91 -0.02 4.61 16 40 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.16 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.13 5.22 8.06 -2.91 -0.02 5.19 16 43 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.16 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -72.50 391.57 4.20 -68.30 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 1.01 Total: 28.24 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.28 Total: 2.16 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -3.33 Total: -96.80 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -1.79 Total: -45.81 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -72.50 4.20 -68.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.771 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds