Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36983 * 120.00054 * 2 1 4 4 H 1.08001 * 120.00379 * 136.95406 * 3 2 1 5 5 C 1.38962 * 119.99856 * 316.67288 * 3 2 1 6 6 N 1.31432 * 119.99839 * 72.75574 * 5 3 2 7 7 Si 1.86798 * 120.00383 * 252.75172 * 5 3 2 8 8 H 1.48496 * 109.46921 * 60.00060 * 7 5 3 9 9 H 1.48502 * 109.47245 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47082 * 300.00133 * 7 5 3 11 11 C 1.34770 * 120.00102 * 179.97438 * 2 1 3 12 12 O 1.21679 * 120.00199 * 171.62828 * 11 2 1 13 13 C 1.47002 * 120.00099 * 351.63358 * 11 2 1 14 14 C 1.44526 * 123.48891 * 327.78810 * 13 11 2 15 15 C 1.32797 * 113.07729 * 180.02562 * 14 13 11 16 16 Br 1.89099 * 124.68938 * 179.97438 * 15 14 13 17 17 S 1.75501 * 110.61982 * 0.02562 * 15 14 13 18 18 C 1.36232 * 123.49135 * 147.49594 * 13 11 2 19 19 Br 1.89094 * 124.60043 * 0.02562 * 18 13 11 20 20 H 1.09004 * 109.47047 * 25.02188 * 1 2 3 21 21 H 1.08993 * 109.47436 * 145.02290 * 1 2 3 22 22 H 1.08997 * 109.47112 * 265.03058 * 1 2 3 23 23 H 0.96996 * 120.00165 * 180.02562 * 6 5 3 24 24 H 1.08005 * 123.45858 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.0119 1.3123 0.6384 5 6 1.7391 2.2257 -0.8258 6 7 0.6465 2.8985 -0.5412 7 14 2.7398 2.6669 -2.3401 8 1 2.8079 1.4934 -3.2475 9 1 2.0944 3.8026 -3.0464 10 1 4.1130 3.0558 -1.9300 11 6 2.1388 -1.1671 0.0005 12 8 3.3459 -1.1728 -0.1529 13 6 1.4156 -2.4334 0.1863 14 6 0.2257 -2.5606 0.9967 15 6 -0.2577 -3.7972 1.0210 16 35 -1.7995 -4.3315 1.9768 17 16 0.7328 -4.8674 0.0444 18 6 1.7942 -3.6072 -0.3922 19 35 3.2975 -3.8123 -1.5208 20 1 -0.3633 0.9313 -0.4347 21 1 -0.3634 -0.8420 -0.5891 22 1 -0.3633 -0.0890 1.0238 23 1 0.3595 3.6238 -1.1178 24 1 -0.2240 -1.7348 1.5280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096408403.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = 30.875413 kcal Electronic energy + Delta-G solvation = -14994.101408 eV Core-core repulsion = 12128.170834 eV Total energy + Delta-G solvation = -2865.930575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 366.862 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.98543 -36.41873 -34.71940 -32.42919 -32.24464 -30.77847 -27.76613 -26.73974 -25.18010 -23.37419 -20.58864 -18.64727 -17.69943 -17.01353 -15.62934 -15.08776 -14.57245 -14.32858 -13.92063 -13.37953 -13.04392 -12.97142 -12.45266 -12.11896 -11.72221 -11.51857 -11.34019 -11.21791 -10.87148 -10.57599 -10.36486 -10.26397 -10.13438 -9.91148 -8.65864 -8.53626 -8.34869 -8.18922 -7.71276 -7.32922 -3.74859 0.67168 0.88208 1.54950 1.78051 2.12329 2.20614 3.07393 3.26880 3.39784 3.94345 4.11834 4.49519 4.88131 5.29308 5.41665 5.69869 5.97046 6.14761 6.24110 6.40600 6.75178 7.02540 8.33461 8.38202 9.05117 9.23325 9.77527 10.02851 Molecular weight = 366.86amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005269 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.095439 B = 5312.874265 C = 7465.617683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.413 5.413 3 C -0.431 4.431 4 H 0.102 0.898 5 C 0.161 3.839 6 N -0.726 5.726 7 Si 0.811 3.189 8 H -0.263 1.263 9 H -0.288 1.288 10 H -0.261 1.261 11 C 0.478 3.522 12 O -0.555 6.555 13 C -0.075 4.075 14 C -0.065 4.065 15 C -0.217 4.217 16 Br 0.005 6.995 17 S 0.232 5.768 18 C -0.203 4.203 19 Br 0.031 6.969 20 H 0.088 0.912 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.283 0.717 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 -14.165 1.564 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.131 5.131 3 C -0.550 4.550 4 H 0.120 0.880 5 C -0.065 4.065 6 N -0.347 5.347 7 Si 0.631 3.369 8 H -0.188 1.188 9 H -0.214 1.214 10 H -0.185 1.185 11 C 0.267 3.733 12 O -0.440 6.440 13 C -0.095 4.095 14 C -0.099 4.099 15 C -0.414 4.414 16 Br 0.088 6.912 17 S 0.495 5.505 18 C -0.403 4.403 19 Br 0.115 6.885 20 H 0.106 0.894 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.692 -15.808 1.128 17.203 hybrid contribution 0.355 2.093 -0.398 2.160 sum -6.337 -13.715 0.730 15.125 Atomic orbital electron populations 1.22349 0.84054 1.02382 0.99519 1.43092 1.03919 1.04562 1.61518 1.18351 1.16926 0.89977 1.29787 0.88039 1.25626 0.92341 0.92484 0.96055 1.70785 1.22693 1.10423 1.30823 0.87798 0.84668 0.77995 0.86479 1.18815 1.21440 1.18548 1.17145 0.87630 0.81598 0.86945 1.90689 1.13159 1.85417 1.54774 1.20734 0.95292 0.95808 0.97672 1.21741 0.94038 0.96221 0.97906 1.25977 1.03311 1.00578 1.11500 1.96676 1.31228 1.90827 1.72438 1.82800 1.16266 1.08174 1.43265 1.25853 1.04166 1.00581 1.09741 1.96686 1.34668 1.96726 1.60394 0.89371 0.94088 0.94265 0.90592 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 8.77 59.85 0.52 1.77 14 2 N -0.41 -10.24 2.99 -123.57 -0.37 -10.61 14 3 C -0.43 -11.62 8.57 -14.98 -0.13 -11.75 14 4 H 0.10 2.96 8.06 -52.49 -0.42 2.54 14 5 C 0.16 4.03 4.79 -17.45 -0.08 3.95 14 6 N -0.73 -17.22 12.22 55.50 0.68 -16.55 14 7 Si 0.81 18.80 29.69 -169.99 -5.05 13.76 14 8 H -0.26 -6.48 7.11 56.52 0.40 -6.08 14 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 14 10 H -0.26 -6.18 7.11 56.52 0.40 -5.78 14 11 C 0.48 11.77 7.27 -12.71 -0.09 11.67 14 12 O -0.56 -15.38 15.38 5.21 0.08 -15.30 14 13 C -0.07 -1.50 5.22 -104.59 -0.55 -2.05 14 14 C -0.06 -1.09 8.26 -38.97 -0.32 -1.41 14 15 C -0.22 -3.16 6.88 28.86 0.20 -2.96 14 16 Br 0.00 0.06 34.05 -68.01 -2.32 -2.26 14 17 S 0.23 3.27 23.01 -107.50 -2.47 0.80 14 18 C -0.20 -3.69 6.74 30.01 0.20 -3.49 14 19 Br 0.03 0.56 32.24 -68.01 -2.19 -1.63 14 20 H 0.09 1.93 5.78 -51.93 -0.30 1.63 14 21 H 0.04 0.77 6.64 -51.93 -0.34 0.42 14 22 H 0.04 0.74 6.44 -51.93 -0.33 0.40 14 23 H 0.28 6.09 8.31 -40.82 -0.34 5.75 14 24 H 0.17 2.66 5.69 -52.48 -0.30 2.36 14 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -28.02 268.31 -8.68 -36.70 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: -0.84 Total: -4.70 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.25 Total: -4.26 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.31 Total: -27.16 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.05 Total: 13.76 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.47 Total: 0.80 kcal Atomic # 35 Polarization: 0.62 SS G_CDS: -4.51 Total: -3.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.02 -8.68 -36.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096408403.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.572 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds