Wall clock time and date at job start Tue Mar 31 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36983 * 120.00054 * 2 1 4 4 H 1.08001 * 120.00379 * 136.95406 * 3 2 1 5 5 C 1.38962 * 119.99856 * 316.67288 * 3 2 1 6 6 N 1.31432 * 119.99839 * 72.75574 * 5 3 2 7 7 Si 1.86798 * 120.00383 * 252.75172 * 5 3 2 8 8 H 1.48496 * 109.46921 * 60.00060 * 7 5 3 9 9 H 1.48502 * 109.47245 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47082 * 300.00133 * 7 5 3 11 11 C 1.34770 * 120.00102 * 179.97438 * 2 1 3 12 12 O 1.21679 * 120.00199 * 171.62828 * 11 2 1 13 13 C 1.47002 * 120.00099 * 351.63358 * 11 2 1 14 14 C 1.44526 * 123.48891 * 327.78810 * 13 11 2 15 15 C 1.32797 * 113.07729 * 180.02562 * 14 13 11 16 16 Br 1.89099 * 124.68938 * 179.97438 * 15 14 13 17 17 S 1.75501 * 110.61982 * 0.02562 * 15 14 13 18 18 C 1.36232 * 123.49135 * 147.49594 * 13 11 2 19 19 Br 1.89094 * 124.60043 * 0.02562 * 18 13 11 20 20 H 1.09004 * 109.47047 * 25.02188 * 1 2 3 21 21 H 1.08993 * 109.47436 * 145.02290 * 1 2 3 22 22 H 1.08997 * 109.47112 * 265.03058 * 1 2 3 23 23 H 0.96996 * 120.00165 * 180.02562 * 6 5 3 24 24 H 1.08005 * 123.45858 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.0119 1.3123 0.6384 5 6 1.7391 2.2257 -0.8258 6 7 0.6465 2.8985 -0.5412 7 14 2.7398 2.6669 -2.3401 8 1 2.8079 1.4934 -3.2475 9 1 2.0944 3.8026 -3.0464 10 1 4.1130 3.0558 -1.9300 11 6 2.1388 -1.1671 0.0005 12 8 3.3459 -1.1728 -0.1529 13 6 1.4156 -2.4334 0.1863 14 6 0.2257 -2.5606 0.9967 15 6 -0.2577 -3.7972 1.0210 16 35 -1.7995 -4.3315 1.9768 17 16 0.7328 -4.8674 0.0444 18 6 1.7942 -3.6072 -0.3922 19 35 3.2975 -3.8123 -1.5208 20 1 -0.3633 0.9313 -0.4347 21 1 -0.3634 -0.8420 -0.5891 22 1 -0.3633 -0.0890 1.0238 23 1 0.3595 3.6238 -1.1178 24 1 -0.2240 -1.7348 1.5280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096408403.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:16 Heat of formation + Delta-G solvation = 14.682432 kcal Electronic energy + Delta-G solvation = -14994.803589 eV Core-core repulsion = 12128.170834 eV Total energy + Delta-G solvation = -2866.632755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 366.862 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.67471 -37.94916 -36.60962 -34.30298 -33.54484 -32.07435 -29.14858 -28.48734 -26.88769 -24.96213 -22.06240 -20.28099 -19.23938 -18.71064 -17.23012 -16.87846 -16.38694 -16.04750 -15.46983 -14.83995 -14.55304 -14.33094 -14.18940 -13.85798 -13.38976 -13.24055 -12.82180 -12.69382 -12.49181 -12.32165 -12.09675 -11.44579 -11.39477 -11.34357 -10.54421 -10.23199 -9.80562 -9.58340 -9.51303 -9.22922 -5.74904 -0.68320 -0.36102 0.29865 0.46078 0.76707 0.81445 1.17962 1.39028 1.49950 2.06062 2.28899 2.63086 3.16320 3.90272 3.93567 4.36641 4.45104 4.56955 4.75858 4.90142 5.04126 5.25129 6.28524 6.51347 7.15239 7.37393 7.92491 8.15049 Molecular weight = 366.86amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005269 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.095439 B = 5312.874265 C = 7465.617683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.426 5.426 3 C -0.483 4.483 4 H 0.060 0.940 5 C 0.150 3.850 6 N -0.723 5.723 7 Si 0.857 3.143 8 H -0.287 1.287 9 H -0.259 1.259 10 H -0.274 1.274 11 C 0.472 3.528 12 O -0.600 6.600 13 C -0.103 4.103 14 C -0.075 4.075 15 C -0.215 4.215 16 Br 0.041 6.959 17 S 0.328 5.672 18 C -0.217 4.217 19 Br 0.024 6.976 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.298 0.702 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 -15.886 1.445 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.144 5.144 3 C -0.601 4.601 4 H 0.078 0.922 5 C -0.078 4.078 6 N -0.344 5.344 7 Si 0.677 3.323 8 H -0.213 1.213 9 H -0.184 1.184 10 H -0.199 1.199 11 C 0.262 3.738 12 O -0.488 6.488 13 C -0.124 4.124 14 C -0.108 4.108 15 C -0.412 4.412 16 Br 0.124 6.876 17 S 0.591 5.409 18 C -0.417 4.417 19 Br 0.108 6.892 20 H 0.094 0.906 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.940 -17.501 1.007 19.678 hybrid contribution 0.953 2.382 -0.311 2.584 sum -7.987 -15.119 0.697 17.114 Atomic orbital electron populations 1.22317 0.81685 1.02507 1.00984 1.43192 1.05387 1.04029 1.61768 1.17932 1.17644 0.91880 1.32643 0.92215 1.25731 0.93300 0.92320 0.96472 1.70654 1.22400 1.10230 1.31154 0.87131 0.83404 0.77622 0.84134 1.21293 1.18407 1.19928 1.17816 0.87484 0.83036 0.85452 1.90631 1.15276 1.86588 1.56270 1.20414 0.97198 0.94269 1.00562 1.21533 0.93431 0.97444 0.98432 1.26248 1.04037 1.00141 1.10751 1.96736 1.28991 1.90254 1.71604 1.82530 1.13068 1.04809 1.40451 1.26322 1.04503 1.02001 1.08888 1.96680 1.35427 1.96614 1.60449 0.90582 0.92134 0.92385 0.88972 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.78 8.77 127.77 1.12 3.90 14 2 N -0.43 -21.72 2.99 -663.09 -1.98 -23.71 14 3 C -0.48 -27.20 8.57 84.06 0.72 -26.48 14 4 H 0.06 3.77 8.06 -2.91 -0.02 3.75 14 5 C 0.15 7.61 4.79 84.93 0.41 8.02 14 6 N -0.72 -34.04 12.22 21.67 0.26 -33.78 14 7 Si 0.86 39.44 29.69 68.60 2.04 41.47 14 8 H -0.29 -14.24 7.11 99.48 0.71 -13.54 14 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 14 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 14 11 C 0.47 23.90 7.27 86.54 0.63 24.53 14 12 O -0.60 -34.69 15.38 -4.28 -0.07 -34.75 14 13 C -0.10 -4.09 5.22 -19.85 -0.10 -4.19 14 14 C -0.08 -2.38 8.26 22.70 0.19 -2.19 14 15 C -0.21 -5.56 6.88 66.64 0.46 -5.10 14 16 Br 0.04 0.82 34.05 -20.37 -0.69 0.12 14 17 S 0.33 8.12 23.01 -56.49 -1.30 6.82 14 18 C -0.22 -7.57 6.74 67.35 0.45 -7.12 14 19 Br 0.02 0.86 32.24 -20.37 -0.66 0.20 14 20 H 0.08 3.29 5.78 -2.38 -0.01 3.28 14 21 H 0.06 2.21 6.64 -2.39 -0.02 2.19 14 22 H 0.06 2.13 6.44 -2.39 -0.02 2.11 14 23 H 0.30 12.40 8.31 -92.71 -0.77 11.63 14 24 H 0.17 5.15 5.69 -2.91 -0.02 5.13 14 Total: -1.00 -62.73 268.31 2.74 -59.99 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: 1.27 Total: -7.74 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 3.87 Total: -8.63 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -1.72 Total: -57.48 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.07 Total: -34.75 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.04 Total: 41.47 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.30 Total: 6.82 kcal Atomic # 35 Polarization: 1.68 SS G_CDS: -1.35 Total: 0.33 kcal Total: -62.73 2.74 -59.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096408403.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.671 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds