Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47449 * 2 1 4 4 C 1.34225 * 116.99782 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00459 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99841 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47487 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47517 * 180.02562 * 7 6 4 9 9 C 1.38285 * 119.92689 * 270.25192 * 8 7 6 10 10 C 1.38115 * 120.06974 * 180.25104 * 9 8 7 11 11 C 1.38885 * 119.92934 * 359.49573 * 10 9 8 12 12 N 1.39847 * 120.07104 * 180.27453 * 11 10 9 13 13 C 1.34783 * 119.99829 * 213.62063 * 12 11 10 14 14 O 1.21558 * 119.99829 * 5.13344 * 13 12 11 15 15 C 1.47857 * 119.99873 * 185.14145 * 13 12 11 16 16 C 1.39929 * 120.02446 * 359.71978 * 15 13 12 17 17 C 1.38329 * 120.35096 * 179.76849 * 16 15 13 18 18 C 1.37756 * 120.41539 * 0.51009 * 17 16 15 19 19 C 1.40751 * 120.04112 * 359.74502 * 18 17 16 20 20 C 1.41438 * 120.17427 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00058 * 331.72056 * 20 19 18 22 22 C 1.39937 * 119.99751 * 151.72419 * 20 19 18 23 23 N 1.30823 * 120.00069 * 348.99893 * 22 20 19 24 24 Si 1.86801 * 119.99761 * 169.00176 * 22 20 19 25 25 H 1.48500 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47128 * 119.99867 * 24 22 20 27 27 H 1.48502 * 109.46966 * 240.00077 * 24 22 20 28 28 C 1.39013 * 120.02220 * 179.97438 * 15 13 12 29 29 C 1.38894 * 119.85304 * 0.25288 * 11 10 9 30 30 C 1.38098 * 119.92898 * 0.02562 * 29 11 10 31 31 H 1.09006 * 109.46579 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.47176 * 59.99534 * 1 2 3 33 33 H 1.08997 * 109.47682 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46969 * 240.00238 * 2 1 3 35 35 H 1.08997 * 109.47401 * 120.00493 * 2 1 3 36 36 H 1.09006 * 109.46839 * 60.00124 * 6 4 3 37 37 H 1.08993 * 109.47500 * 300.00441 * 6 4 3 38 38 H 1.08996 * 109.47528 * 59.99913 * 7 6 4 39 39 H 1.09008 * 109.47434 * 300.00363 * 7 6 4 40 40 H 1.07995 * 119.96497 * 0.02562 * 9 8 7 41 41 H 1.08003 * 120.03077 * 179.77473 * 10 9 8 42 42 H 0.96991 * 120.00601 * 33.61820 * 12 11 10 43 43 H 1.07999 * 119.82224 * 359.97438 * 16 15 13 44 44 H 1.07998 * 119.79046 * 180.23669 * 17 16 15 45 45 H 1.07993 * 119.97704 * 179.72470 * 18 17 16 46 46 H 0.97001 * 120.00164 * 179.97438 * 23 22 20 47 47 H 1.08001 * 120.20677 * 359.95284 * 28 15 13 48 48 H 1.08006 * 120.03252 * 180.02562 * 29 11 10 49 49 H 1.08002 * 119.96455 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 -0.0012 7 6 5.4487 2.8571 -0.0023 8 6 6.0248 4.2496 -0.0023 9 6 6.2828 4.8895 -1.2007 10 6 6.8156 6.1638 -1.2042 11 6 7.0825 6.8065 -0.0023 12 7 7.6166 8.0989 -0.0024 13 6 8.4722 8.4745 0.9690 14 8 8.8523 7.6637 1.7910 15 6 8.9483 9.8728 1.0347 16 6 8.5156 10.8052 0.0853 17 6 8.9529 12.1162 0.1432 18 6 9.8274 12.5168 1.1294 19 6 10.2778 11.5918 2.0900 20 6 11.1752 12.0001 3.1041 21 1 11.8593 12.8160 2.9234 22 6 11.1767 11.3468 4.3416 23 7 10.2160 10.5108 4.6411 24 14 12.5504 11.6684 5.5658 25 1 13.5075 12.6472 4.9901 26 1 11.9766 12.2162 6.8211 27 1 13.2597 10.3972 5.8592 28 6 9.8304 10.2609 2.0367 29 6 6.8173 6.1630 1.1996 30 6 6.2900 4.8867 1.1961 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.5852 3.4696 0.8889 37 1 3.5846 3.4692 -0.8911 38 1 5.7840 2.3249 -0.8924 39 1 5.7854 2.3250 0.8875 40 1 6.0708 4.3910 -2.1350 41 1 7.0202 6.6615 -2.1406 42 1 7.3715 8.7251 -0.7013 43 1 7.8338 10.5003 -0.6949 44 1 8.6101 12.8292 -0.5920 45 1 10.1678 13.5410 1.1654 46 1 10.2173 10.0576 5.4988 47 1 10.1697 9.5438 2.7696 48 1 7.0234 6.6602 2.1360 49 1 6.0840 4.3856 2.1304 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096416514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = -92.496995 kcal Electronic energy + Delta-G solvation = -30472.002549 eV Core-core repulsion = 26135.022723 eV Total energy + Delta-G solvation = -4336.979826 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83861 -40.24042 -38.66558 -37.22861 -36.98524 -35.07472 -33.82952 -33.19367 -32.09762 -30.88138 -30.46299 -29.53662 -28.82910 -25.63194 -25.17170 -23.56259 -22.95280 -22.61782 -21.37654 -21.01704 -20.57620 -19.59600 -18.11099 -17.98356 -17.36161 -17.13642 -16.65394 -16.08655 -15.56395 -15.31545 -15.13203 -14.81783 -14.73744 -14.28601 -14.05944 -13.95661 -13.68469 -13.57246 -13.32172 -13.20085 -13.09986 -13.00059 -12.75250 -12.60182 -12.31631 -12.20380 -11.99169 -11.71137 -11.55218 -11.51275 -11.21641 -11.14802 -11.01291 -10.92067 -10.81212 -10.77116 -10.54590 -10.09849 -9.97953 -9.77747 -9.32971 -9.19026 -8.82744 -7.92925 -7.67309 -7.56594 -6.80655 -4.49688 1.27550 1.48469 1.88866 2.09644 2.34035 2.74377 3.05714 3.08512 3.10530 3.44657 3.60825 3.88743 3.94900 4.28044 4.47486 4.53710 4.59248 4.65806 4.71519 4.81918 4.89007 4.95339 5.07679 5.21305 5.29916 5.31174 5.34487 5.44515 5.48572 5.50820 5.52604 5.74026 5.81645 5.86529 5.96742 6.10096 6.10735 6.16693 6.35696 6.47880 6.63753 6.64462 6.70811 6.89191 6.92258 7.14533 7.20026 7.28771 7.42201 7.58744 7.63287 7.80842 7.93770 8.09923 8.43210 8.68901 8.74962 8.77190 10.13214 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.001495 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.664195 B =18727.671671 C =19753.705266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.509 6.509 6 C -0.109 4.109 7 C -0.062 4.062 8 C -0.117 4.117 9 C -0.094 4.094 10 C -0.153 4.153 11 C 0.165 3.835 12 N -0.680 5.680 13 C 0.564 3.436 14 O -0.523 6.523 15 C -0.133 4.133 16 C -0.214 4.214 17 C -0.099 4.099 18 C -0.205 4.205 19 C 0.097 3.903 20 C -0.459 4.459 21 H 0.082 0.918 22 C 0.071 3.929 23 N -0.792 5.792 24 Si 0.913 3.087 25 H -0.260 1.260 26 H -0.274 1.274 27 H -0.271 1.271 28 C -0.082 4.082 29 C -0.121 4.121 30 C -0.092 4.092 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.410 0.590 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.284 0.716 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 -14.867 -9.646 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.305 3.695 5 O -0.397 6.397 6 C -0.146 4.146 7 C -0.099 4.099 8 C -0.118 4.118 9 C -0.113 4.113 10 C -0.173 4.173 11 C 0.069 3.931 12 N -0.326 5.326 13 C 0.357 3.643 14 O -0.399 6.399 15 C -0.137 4.137 16 C -0.234 4.234 17 C -0.117 4.117 18 C -0.225 4.225 19 C 0.095 3.905 20 C -0.488 4.488 21 H 0.100 0.900 22 C -0.147 4.147 23 N -0.417 5.417 24 Si 0.738 3.262 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.102 4.102 29 C -0.141 4.141 30 C -0.111 4.111 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.247 0.753 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.336 -15.836 -8.815 23.742 hybrid contribution 0.379 0.352 0.207 0.557 sum -14.957 -15.484 -8.607 23.185 Atomic orbital electron populations 1.21814 0.92562 1.03020 1.03627 1.23030 0.95433 0.80224 1.02623 1.86523 1.24790 1.32438 1.84031 1.23931 0.80435 0.93076 0.72079 1.90680 1.60381 1.43346 1.45279 1.21477 0.96383 0.90392 1.06379 1.20306 0.91393 0.93768 1.04449 1.19601 1.02899 0.95880 0.93387 1.20732 0.99054 0.94161 0.97341 1.20875 1.04300 0.95663 0.96508 1.17871 0.95316 0.85932 0.93948 1.43698 1.46267 1.12124 1.30509 1.19023 0.76756 0.89106 0.79439 1.90723 1.56352 1.53437 1.39375 1.19394 1.03709 0.90416 1.00162 1.20361 1.07313 0.94445 1.01286 1.20447 0.98400 0.94831 0.98041 1.21181 1.02931 0.98245 1.00121 1.17628 0.90952 0.90405 0.91561 1.19629 1.17260 1.15547 0.96362 0.90033 1.25957 0.95923 0.93421 0.99443 1.69749 1.28281 1.20981 1.22643 0.86171 0.81048 0.79345 0.79670 1.18380 1.19880 1.19619 1.21730 0.95989 0.96656 0.95833 1.21258 0.98949 0.95772 0.98138 1.20905 0.98325 0.94411 0.97433 0.91386 0.91428 0.90217 0.91238 0.91205 0.87325 0.87410 0.90232 0.90155 0.85981 0.85806 0.75286 0.89162 0.88698 0.88421 0.90511 0.84449 0.84467 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -3.17 10.22 -39.24 -0.40 -3.57 16 4 C 0.46 4.38 7.96 36.01 0.29 4.67 16 5 O -0.51 -6.24 15.73 -18.75 -0.29 -6.53 16 6 C -0.11 -0.82 5.79 -27.89 -0.16 -0.98 16 7 C -0.06 -0.56 4.63 -27.89 -0.13 -0.69 16 8 C -0.12 -1.28 5.14 -104.59 -0.54 -1.82 16 9 C -0.09 -1.01 9.69 -39.61 -0.38 -1.39 16 10 C -0.15 -1.88 9.96 -39.39 -0.39 -2.27 16 11 C 0.16 2.53 6.27 -83.72 -0.53 2.01 16 12 N -0.68 -11.24 5.28 -10.71 -0.06 -11.30 16 13 C 0.56 11.94 7.51 -12.32 -0.09 11.85 16 14 O -0.52 -12.57 14.03 5.31 0.07 -12.49 16 15 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 16 C -0.21 -4.29 9.55 -38.92 -0.37 -4.67 16 17 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 18 C -0.20 -4.70 9.78 -38.81 -0.38 -5.08 16 19 C 0.10 2.50 5.55 -106.87 -0.59 1.90 16 20 C -0.46 -11.79 9.06 -37.73 -0.34 -12.13 16 21 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 22 C 0.07 1.75 5.25 -17.35 -0.09 1.66 16 23 N -0.79 -20.58 10.82 55.55 0.60 -19.98 16 24 Si 0.91 18.54 29.57 -169.99 -5.03 13.52 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 C -0.08 -2.12 8.21 -38.44 -0.32 -2.44 16 29 C -0.12 -1.92 8.65 -39.39 -0.34 -2.26 16 30 C -0.09 -1.18 9.69 -39.61 -0.38 -1.56 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 39 H 0.08 0.77 8.04 -51.92 -0.42 0.35 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.41 5.63 6.85 -40.82 -0.28 5.35 16 43 H 0.09 1.46 6.39 -52.49 -0.34 1.13 16 44 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 46 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 47 H 0.14 3.86 5.76 -52.49 -0.30 3.56 16 48 H 0.14 2.51 6.43 -52.48 -0.34 2.17 16 49 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 416.98 15.07 6.28 6.28 Total: -1.00 -30.94 416.98 -10.69 -41.63 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.71 Total: 11.36 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -5.15 Total: -18.92 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.54 Total: -31.28 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.62 Total: -22.59 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.94 -10.69 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096416514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.870 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds