Wall clock time and date at job start Tue Mar 31 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47449 * 2 1 4 4 C 1.34225 * 116.99782 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00459 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99841 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47487 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47517 * 180.02562 * 7 6 4 9 9 C 1.38285 * 119.92689 * 270.25192 * 8 7 6 10 10 C 1.38115 * 120.06974 * 180.25104 * 9 8 7 11 11 C 1.38885 * 119.92934 * 359.49573 * 10 9 8 12 12 N 1.39847 * 120.07104 * 180.27453 * 11 10 9 13 13 C 1.34783 * 119.99829 * 213.62063 * 12 11 10 14 14 O 1.21558 * 119.99829 * 5.13344 * 13 12 11 15 15 C 1.47857 * 119.99873 * 185.14145 * 13 12 11 16 16 C 1.39929 * 120.02446 * 359.71978 * 15 13 12 17 17 C 1.38329 * 120.35096 * 179.76849 * 16 15 13 18 18 C 1.37756 * 120.41539 * 0.51009 * 17 16 15 19 19 C 1.40751 * 120.04112 * 359.74502 * 18 17 16 20 20 C 1.41438 * 120.17427 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00058 * 331.72056 * 20 19 18 22 22 C 1.39937 * 119.99751 * 151.72419 * 20 19 18 23 23 N 1.30823 * 120.00069 * 348.99893 * 22 20 19 24 24 Si 1.86801 * 119.99761 * 169.00176 * 22 20 19 25 25 H 1.48500 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47128 * 119.99867 * 24 22 20 27 27 H 1.48502 * 109.46966 * 240.00077 * 24 22 20 28 28 C 1.39013 * 120.02220 * 179.97438 * 15 13 12 29 29 C 1.38894 * 119.85304 * 0.25288 * 11 10 9 30 30 C 1.38098 * 119.92898 * 0.02562 * 29 11 10 31 31 H 1.09006 * 109.46579 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.47176 * 59.99534 * 1 2 3 33 33 H 1.08997 * 109.47682 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46969 * 240.00238 * 2 1 3 35 35 H 1.08997 * 109.47401 * 120.00493 * 2 1 3 36 36 H 1.09006 * 109.46839 * 60.00124 * 6 4 3 37 37 H 1.08993 * 109.47500 * 300.00441 * 6 4 3 38 38 H 1.08996 * 109.47528 * 59.99913 * 7 6 4 39 39 H 1.09008 * 109.47434 * 300.00363 * 7 6 4 40 40 H 1.07995 * 119.96497 * 0.02562 * 9 8 7 41 41 H 1.08003 * 120.03077 * 179.77473 * 10 9 8 42 42 H 0.96991 * 120.00601 * 33.61820 * 12 11 10 43 43 H 1.07999 * 119.82224 * 359.97438 * 16 15 13 44 44 H 1.07998 * 119.79046 * 180.23669 * 17 16 15 45 45 H 1.07993 * 119.97704 * 179.72470 * 18 17 16 46 46 H 0.97001 * 120.00164 * 179.97438 * 23 22 20 47 47 H 1.08001 * 120.20677 * 359.95284 * 28 15 13 48 48 H 1.08006 * 120.03252 * 180.02562 * 29 11 10 49 49 H 1.08002 * 119.96455 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0015 6 6 3.9209 2.9372 -0.0012 7 6 5.4487 2.8571 -0.0023 8 6 6.0248 4.2496 -0.0023 9 6 6.2828 4.8895 -1.2007 10 6 6.8156 6.1638 -1.2042 11 6 7.0825 6.8065 -0.0023 12 7 7.6166 8.0989 -0.0024 13 6 8.4722 8.4745 0.9690 14 8 8.8523 7.6637 1.7910 15 6 8.9483 9.8728 1.0347 16 6 8.5156 10.8052 0.0853 17 6 8.9529 12.1162 0.1432 18 6 9.8274 12.5168 1.1294 19 6 10.2778 11.5918 2.0900 20 6 11.1752 12.0001 3.1041 21 1 11.8593 12.8160 2.9234 22 6 11.1767 11.3468 4.3416 23 7 10.2160 10.5108 4.6411 24 14 12.5504 11.6684 5.5658 25 1 13.5075 12.6472 4.9901 26 1 11.9766 12.2162 6.8211 27 1 13.2597 10.3972 5.8592 28 6 9.8304 10.2609 2.0367 29 6 6.8173 6.1630 1.1996 30 6 6.2900 4.8867 1.1961 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.5852 3.4696 0.8889 37 1 3.5846 3.4692 -0.8911 38 1 5.7840 2.3249 -0.8924 39 1 5.7854 2.3250 0.8875 40 1 6.0708 4.3910 -2.1350 41 1 7.0202 6.6615 -2.1406 42 1 7.3715 8.7251 -0.7013 43 1 7.8338 10.5003 -0.6949 44 1 8.6101 12.8292 -0.5920 45 1 10.1678 13.5410 1.1654 46 1 10.2173 10.0576 5.4988 47 1 10.1697 9.5438 2.7696 48 1 7.0234 6.6602 2.1360 49 1 6.0840 4.3856 2.1304 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096416514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:24 Heat of formation + Delta-G solvation = -107.602972 kcal Electronic energy + Delta-G solvation = -30472.657593 eV Core-core repulsion = 26135.022723 eV Total energy + Delta-G solvation = -4337.634870 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.69260 -41.48152 -39.94784 -38.81186 -37.81138 -36.33928 -35.59054 -34.25216 -32.65095 -32.07670 -31.87900 -31.30858 -29.90087 -27.28580 -26.29519 -24.62292 -23.88327 -23.69495 -22.85636 -22.24474 -21.47747 -21.11307 -19.62156 -18.84920 -18.73099 -17.82825 -17.69149 -17.35505 -17.05221 -16.56943 -16.40640 -16.22166 -15.81728 -15.68586 -15.26251 -15.09358 -14.83575 -14.61250 -14.47100 -14.36857 -14.28115 -14.01282 -13.89296 -13.65435 -13.50584 -13.06294 -12.96671 -12.88306 -12.82409 -12.56667 -12.53492 -12.44303 -12.32796 -12.19068 -11.92972 -11.82514 -11.55038 -11.52558 -11.51629 -11.25485 -11.14531 -10.79299 -9.85870 -9.57700 -9.38132 -8.96999 -8.62982 -6.42203 0.06661 0.47373 0.52166 0.98682 1.17352 1.36165 1.44760 1.51797 1.70961 2.01765 2.08937 2.18965 2.74915 2.87906 3.61640 3.65884 3.80503 3.94630 3.97307 4.00482 4.07414 4.08995 4.18389 4.22967 4.35796 4.38837 4.49382 4.53777 4.55438 4.59872 4.68848 4.87413 4.87518 4.91608 4.93433 5.06481 5.10372 5.13138 5.15387 5.17669 5.29646 5.32375 5.42493 5.48847 5.49534 5.57068 5.68281 5.82741 5.88379 6.04076 6.09245 6.26151 6.44084 6.61031 6.72206 6.87386 6.91970 7.16838 8.32655 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.001495 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.664195 B =18727.671671 C =19753.705266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.103 4.103 7 C -0.057 4.057 8 C -0.101 4.101 9 C -0.087 4.087 10 C -0.140 4.140 11 C 0.131 3.869 12 N -0.659 5.659 13 C 0.562 3.438 14 O -0.565 6.565 15 C -0.144 4.144 16 C -0.191 4.191 17 C -0.097 4.097 18 C -0.208 4.208 19 C 0.064 3.936 20 C -0.496 4.496 21 H 0.084 0.916 22 C 0.026 3.974 23 N -0.834 5.834 24 Si 0.984 3.016 25 H -0.251 1.251 26 H -0.265 1.265 27 H -0.272 1.272 28 C -0.120 4.120 29 C -0.147 4.147 30 C -0.099 4.099 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.424 0.576 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.111 0.889 46 H 0.284 0.716 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 -15.149 -13.029 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.309 3.691 5 O -0.432 6.432 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.101 4.101 9 C -0.105 4.105 10 C -0.161 4.161 11 C 0.037 3.963 12 N -0.306 5.306 13 C 0.353 3.647 14 O -0.444 6.444 15 C -0.147 4.147 16 C -0.210 4.210 17 C -0.115 4.115 18 C -0.228 4.228 19 C 0.062 3.938 20 C -0.526 4.526 21 H 0.102 0.898 22 C -0.187 4.187 23 N -0.461 5.461 24 Si 0.805 3.195 25 H -0.174 1.174 26 H -0.190 1.190 27 H -0.197 1.197 28 C -0.141 4.141 29 C -0.168 4.168 30 C -0.117 4.117 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.264 0.736 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.129 0.871 46 H 0.095 0.905 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.418 -16.107 -12.253 26.702 hybrid contribution 0.798 0.307 1.039 1.346 sum -16.620 -15.800 -11.214 25.527 Atomic orbital electron populations 1.21828 0.90650 1.04281 1.03714 1.23257 0.96966 0.79391 1.02478 1.86525 1.24387 1.33555 1.83656 1.24255 0.80461 0.93360 0.71027 1.90672 1.61050 1.44521 1.46982 1.21476 0.95009 0.89534 1.07994 1.20261 0.92498 0.92217 1.04488 1.19811 1.01205 0.96333 0.92796 1.21182 0.97257 0.93435 0.98616 1.21177 1.02761 0.96017 0.96100 1.18110 0.97404 0.85741 0.95061 1.43330 1.44756 1.13200 1.29275 1.18880 0.77396 0.88326 0.80058 1.90703 1.58149 1.54283 1.41291 1.19692 1.02979 0.92078 0.99957 1.20913 1.05886 0.93668 1.00546 1.20952 0.96879 0.95815 0.97863 1.21498 1.03005 0.98449 0.99857 1.17965 0.91996 0.90970 0.92839 1.19891 1.18561 1.16733 0.97404 0.89813 1.26833 0.97936 0.92863 1.01096 1.69870 1.30365 1.22621 1.23233 0.85116 0.77951 0.79132 0.77281 1.17378 1.19003 1.19708 1.21505 0.98879 0.96491 0.97215 1.21123 1.01189 0.97274 0.97189 1.21032 0.98239 0.93411 0.99051 0.91430 0.91143 0.88401 0.91223 0.91606 0.86308 0.85087 0.89482 0.91000 0.82155 0.82938 0.73577 0.84242 0.84005 0.87112 0.90502 0.88113 0.88353 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 71.98 0.74 -0.32 16 2 C 0.05 0.66 6.19 71.98 0.45 1.10 16 3 O -0.36 -5.79 10.22 -51.37 -0.53 -6.32 16 4 C 0.46 7.99 7.96 71.24 0.57 8.55 16 5 O -0.54 -12.68 15.73 21.95 0.35 -12.34 16 6 C -0.10 -1.26 5.79 29.85 0.17 -1.09 16 7 C -0.06 -0.89 4.63 29.84 0.14 -0.75 16 8 C -0.10 -1.95 5.14 -19.84 -0.10 -2.05 16 9 C -0.09 -1.50 9.69 22.25 0.22 -1.28 16 10 C -0.14 -2.97 9.96 22.40 0.22 -2.75 16 11 C 0.13 3.91 6.27 38.17 0.24 4.15 16 12 N -0.66 -21.22 5.28 -306.08 -1.62 -22.84 16 13 C 0.56 24.56 7.51 86.79 0.65 25.21 16 14 O -0.56 -29.21 14.03 -3.90 -0.05 -29.26 16 15 C -0.14 -6.67 5.87 -20.14 -0.12 -6.79 16 16 C -0.19 -7.17 9.55 22.70 0.22 -6.95 16 17 C -0.10 -3.69 10.01 22.18 0.22 -3.47 16 18 C -0.21 -9.48 9.78 22.77 0.22 -9.26 16 19 C 0.06 3.46 5.55 -21.32 -0.12 3.34 16 20 C -0.50 -26.87 9.06 23.47 0.21 -26.66 16 21 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 22 C 0.03 1.37 5.25 85.25 0.45 1.82 16 23 N -0.83 -46.76 10.82 21.82 0.24 -46.52 16 24 Si 0.98 39.88 29.57 68.60 2.03 41.91 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 26 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 28 C -0.12 -6.62 8.21 23.01 0.19 -6.43 16 29 C -0.15 -4.84 8.65 22.39 0.19 -4.65 16 30 C -0.10 -2.49 9.69 22.25 0.22 -2.28 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 35 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 39 H 0.07 1.28 8.04 -2.38 -0.02 1.26 16 40 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.42 10.43 6.85 -92.72 -0.63 9.80 16 43 H 0.14 3.83 6.39 -2.91 -0.02 3.81 16 44 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 46 H 0.28 14.73 8.30 -92.71 -0.77 13.96 16 47 H 0.10 6.23 5.76 -2.91 -0.02 6.21 16 48 H 0.10 3.97 6.43 -2.91 -0.02 3.95 16 49 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -75.05 416.98 5.74 -69.32 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.35 Total: 36.59 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 4.98 Total: -30.54 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.38 Total: -69.36 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.23 Total: -47.92 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -75.05 5.74 -69.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096416514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.286 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds