Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38063 * 119.57494 * 2 1 4 4 C 1.38845 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.25134 * 4 3 2 6 6 C 1.39101 * 119.09641 * 359.52452 * 5 4 3 7 7 N 1.39002 * 119.70374 * 180.22633 * 6 5 4 8 8 C 1.46500 * 120.00312 * 0.25780 * 7 6 5 9 9 C 1.53044 * 109.45986 * 275.06650 * 8 7 6 10 10 C 1.53192 * 109.31095 * 178.61181 * 9 8 7 11 11 N 1.46927 * 108.77689 * 54.63508 * 10 9 8 12 12 S 1.65597 * 120.63155 * 126.40918 * 11 10 9 13 13 O 1.42104 * 104.27461 * 26.05089 * 12 11 10 14 14 O 1.42096 * 104.28059 * 153.90644 * 12 11 10 15 15 C 1.81399 * 104.45184 * 269.97831 * 12 11 10 16 16 C 1.53004 * 109.47266 * 179.97438 * 15 12 11 17 17 C 1.53004 * 109.47045 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.46675 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00457 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99759 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99978 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47109 * 89.99759 * 22 20 18 24 24 H 1.48496 * 109.46803 * 209.99986 * 22 20 18 25 25 H 1.48500 * 109.46872 * 329.99689 * 22 20 18 26 26 C 1.46924 * 118.73674 * 306.38944 * 11 10 9 27 27 C 1.53038 * 109.46134 * 154.99646 * 8 7 6 28 28 N 1.31947 * 119.57261 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47390 * 90.00120 * 1 2 3 30 30 H 1.09000 * 109.46998 * 210.00381 * 1 2 3 31 31 H 1.09005 * 109.47089 * 330.00212 * 1 2 3 32 32 H 1.08000 * 120.33564 * 359.97225 * 3 2 1 33 33 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.45228 * 179.72755 * 5 4 3 35 35 H 0.97006 * 120.00234 * 180.25198 * 7 6 5 36 36 H 1.09002 * 109.46062 * 35.02429 * 8 7 6 37 37 H 1.09006 * 109.49333 * 298.56371 * 9 8 7 38 38 H 1.09000 * 109.49648 * 58.65932 * 9 8 7 39 39 H 1.08996 * 109.59044 * 294.84440 * 10 9 8 40 40 H 1.09001 * 109.58603 * 174.42077 * 10 9 8 41 41 H 1.08998 * 109.46974 * 299.99802 * 15 12 11 42 42 H 1.09000 * 109.47088 * 59.99996 * 15 12 11 43 43 H 1.09005 * 109.46681 * 300.00071 * 16 15 12 44 44 H 1.09000 * 109.47065 * 59.99989 * 16 15 12 45 45 H 1.08998 * 109.46801 * 299.99568 * 17 16 15 46 46 H 1.08993 * 109.47344 * 59.99516 * 17 16 15 47 47 H 0.96997 * 119.99989 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.58721 * 293.81821 * 26 11 10 49 49 H 1.09005 * 109.70168 * 173.46370 * 26 11 10 50 50 H 1.09002 * 109.49946 * 301.33031 * 27 8 7 51 51 H 1.08997 * 109.49961 * 61.43739 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0064 6 6 3.4815 -1.1950 -0.0014 7 7 4.1267 -2.4263 -0.0024 8 6 5.5904 -2.4863 -0.0030 9 6 6.1045 -2.3790 -1.4405 10 6 7.6362 -2.4072 -1.4342 11 7 8.0840 -3.6115 -0.7215 12 16 9.1400 -4.6698 -1.4338 13 8 9.8579 -3.8738 -2.3666 14 8 9.8010 -5.2938 -0.3416 15 6 8.0761 -5.8585 -2.2972 16 6 8.9449 -6.9008 -3.0043 17 6 8.0475 -7.9030 -3.7331 18 6 8.9032 -8.9299 -4.4290 19 1 9.9794 -8.8731 -4.3589 20 6 8.3122 -9.9420 -5.1553 21 7 9.0590 -10.8378 -5.7630 22 14 6.4507 -10.0398 -5.2772 23 1 5.9903 -9.2624 -6.4556 24 1 6.0385 -11.4584 -5.4282 25 1 5.8437 -9.4765 -4.0446 26 6 7.5775 -3.8587 0.6353 27 6 6.0465 -3.8142 0.6059 28 7 2.1581 -1.1476 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6469 2.1352 -0.0005 33 1 4.1329 2.1206 -0.0010 34 1 5.3110 -0.0650 -0.0114 35 1 3.6077 -3.2458 -0.0027 36 1 5.9880 -1.6606 0.5872 37 1 5.7275 -3.2181 -2.0253 38 1 5.7597 -1.4436 -1.8813 39 1 8.0160 -1.5202 -0.9273 40 1 8.0055 -2.4309 -2.4595 41 1 7.4265 -6.3551 -1.5765 42 1 7.4675 -5.3335 -3.0335 43 1 9.5942 -6.4038 -3.7252 44 1 9.5538 -7.4258 -2.2684 45 1 7.3980 -8.4000 -3.0126 46 1 7.4389 -7.3777 -4.4690 47 1 8.6432 -11.5500 -6.2736 48 1 7.9525 -3.0900 1.3111 49 1 7.9080 -4.8393 0.9780 50 1 5.6605 -3.9003 1.6216 51 1 5.6701 -4.6398 0.0018 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -44.304103 kcal Electronic energy + Delta-G solvation = -30954.998031 eV Core-core repulsion = 26787.844708 eV Total energy + Delta-G solvation = -4167.153323 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.172 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71236 -39.14449 -37.09646 -36.05271 -35.80600 -34.84426 -33.04861 -32.52609 -32.23816 -31.54309 -30.02681 -28.41310 -27.52113 -24.71651 -23.88985 -23.61673 -22.97032 -21.99931 -20.86176 -20.29854 -19.02644 -17.94487 -17.70536 -16.97995 -16.91168 -16.34139 -16.07064 -15.98076 -15.30069 -15.08304 -15.03978 -14.79703 -14.47164 -14.36247 -14.20286 -14.17438 -13.53949 -13.27157 -13.13055 -13.00380 -12.82202 -12.78177 -12.51918 -12.38467 -12.18864 -12.14713 -11.97987 -11.92820 -11.74304 -11.64981 -11.62089 -11.38656 -11.02056 -10.98361 -10.97234 -10.47353 -10.12949 -9.91675 -9.86220 -9.79144 -9.73233 -9.32231 -9.16690 -8.61147 -8.01930 -6.10766 -4.10172 0.29101 0.95359 1.16997 2.56875 2.70441 3.24551 3.32326 3.33900 3.57591 3.88736 4.09098 4.13342 4.21626 4.36971 4.37969 4.43572 4.51737 4.66519 4.70517 4.72480 4.90250 4.92059 4.95624 5.00255 5.01656 5.15650 5.22718 5.22938 5.24512 5.28381 5.30892 5.32874 5.37880 5.49565 5.62426 5.66429 5.69710 5.76579 5.82004 5.82484 6.00555 6.08735 6.22681 6.25925 6.31635 6.63324 6.70892 7.09256 7.23249 7.23731 7.68489 7.89989 8.45063 8.93574 9.50245 11.02467 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.002188 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.973383 B =12792.202877 C =14760.541558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.176 3.824 3 C -0.238 4.238 4 C -0.031 4.031 5 C -0.248 4.248 6 C 0.411 3.589 7 N -0.721 5.721 8 C 0.159 3.841 9 C -0.154 4.154 10 C 0.124 3.876 11 N -1.005 6.005 12 S 2.601 3.399 13 O -0.956 6.956 14 O -0.956 6.956 15 C -0.615 4.615 16 C -0.098 4.098 17 C -0.004 4.004 18 C -0.528 4.528 19 H 0.075 0.925 20 C 0.067 3.933 21 N -0.899 5.899 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.126 3.874 27 C -0.145 4.145 28 N -0.547 5.547 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.405 0.595 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.019 0.981 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.084 0.916 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.990 25.942 15.632 33.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.037 3.963 3 C -0.261 4.261 4 C -0.057 4.057 5 C -0.273 4.273 6 C 0.175 3.825 7 N -0.352 5.352 8 C 0.053 3.947 9 C -0.195 4.195 10 C -0.002 4.002 11 N -0.842 5.842 12 S 2.697 3.303 13 O -0.946 6.946 14 O -0.947 6.947 15 C -0.747 4.747 16 C -0.137 4.137 17 C -0.042 4.042 18 C -0.566 4.566 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.538 5.538 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 C 0.000 4.000 27 C -0.184 4.184 28 N -0.266 5.266 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.240 0.760 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.033 0.967 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.117 0.883 50 H 0.102 0.898 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.290 25.097 15.613 32.407 hybrid contribution -1.426 0.061 -0.436 1.493 sum -14.716 25.158 15.176 32.860 Atomic orbital electron populations 1.20737 0.89045 1.03363 1.03115 1.20907 0.96347 0.87489 0.91510 1.21611 0.94849 0.98856 1.10800 1.21310 0.94256 0.97576 0.92520 1.21421 1.00827 0.91996 1.13060 1.18309 0.88104 0.86356 0.89719 1.44634 1.05433 1.04916 1.80222 1.20924 0.78705 0.98822 0.96253 1.22507 0.95853 1.03752 0.97384 1.21374 0.93376 0.87380 0.98037 1.57978 1.65594 1.36074 1.24539 1.05424 0.75270 0.74903 0.74682 1.93574 1.69106 1.67052 1.64899 1.93572 1.71504 1.77511 1.52064 1.30660 1.15338 1.15281 1.13388 1.21316 0.97737 0.95304 0.99330 1.19520 0.95435 0.94006 0.95270 1.21129 0.95049 1.09523 1.30852 0.90727 1.25032 0.98145 0.95324 0.94923 1.69909 1.35433 1.15193 1.33261 0.86775 0.86233 0.77316 0.78919 1.20228 1.21242 1.19096 1.21337 0.92247 1.03529 0.82871 1.22246 0.96679 0.97188 1.02334 1.66960 1.07698 1.30304 1.21626 0.90342 0.90568 0.90655 0.85359 0.85107 0.85075 0.75969 0.89742 0.90587 0.90235 0.90828 0.88501 0.85531 0.85542 0.91031 0.90995 0.96229 0.96671 0.92605 0.90685 0.88271 0.89782 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.17 36.00 0.37 -0.27 16 2 C 0.18 1.55 6.78 -82.61 -0.56 0.99 16 3 C -0.24 -1.79 9.73 -39.42 -0.38 -2.17 16 4 C -0.03 -0.22 10.17 -39.32 -0.40 -0.62 16 5 C -0.25 -1.99 8.81 -39.22 -0.35 -2.34 16 6 C 0.41 3.89 7.63 -155.02 -1.18 2.71 16 7 N -0.72 -5.63 5.25 -53.89 -0.28 -5.92 16 8 C 0.16 1.03 2.10 -67.89 -0.14 0.88 16 9 C -0.15 -1.08 5.56 -26.61 -0.15 -1.23 16 10 C 0.12 0.98 6.31 -3.71 -0.02 0.96 16 11 N -1.01 -9.45 3.22 -113.52 -0.37 -9.82 16 12 S 2.60 34.78 5.41 -107.50 -0.58 34.20 16 13 O -0.96 -15.51 16.72 -57.54 -0.96 -16.47 16 14 O -0.96 -15.39 16.73 -57.54 -0.96 -16.35 16 15 C -0.62 -8.45 6.18 37.16 0.23 -8.22 16 16 C -0.10 -1.86 5.16 -26.73 -0.14 -1.99 16 17 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 18 C -0.53 -14.93 9.66 -34.44 -0.33 -15.27 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 22 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 26 C 0.13 0.95 6.31 -3.71 -0.02 0.92 16 27 C -0.14 -0.89 5.55 -26.61 -0.15 -1.04 16 28 N -0.55 -5.79 10.30 -8.67 -0.09 -5.87 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.84 6.07 -52.49 -0.32 0.52 16 35 H 0.40 3.12 8.73 -40.82 -0.36 2.76 16 36 H 0.08 0.50 6.46 -51.93 -0.34 0.17 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.54 7.64 -51.93 -0.40 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.82 7.10 -51.93 -0.37 0.45 16 41 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 46 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.78 7.11 -51.93 -0.37 0.42 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 417.37 15.07 6.29 6.29 Total: -1.00 -36.52 417.37 -12.71 -49.22 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.41 Total: -0.14 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.44 Total: -25.02 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.04 Total: -48.43 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.92 Total: -32.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 34.78 SS G_CDS: -0.58 Total: 34.20 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.52 -12.71 -49.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.921 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds