Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 108.44109 * 2 1 4 4 C 1.47550 * 108.50453 * 117.66454 * 2 1 3 5 5 C 1.54943 * 109.73470 * 183.32388 * 4 2 1 6 6 N 1.44677 * 109.52363 * 290.51679 * 5 4 2 7 7 S 1.65598 * 118.55184 * 269.08689 * 6 5 4 8 8 O 1.42096 * 104.27814 * 26.04446 * 7 6 5 9 9 O 1.42095 * 104.28112 * 153.90936 * 7 6 5 10 10 C 1.81407 * 104.44650 * 269.97812 * 7 6 5 11 11 C 1.53000 * 109.46966 * 179.97438 * 10 7 6 12 12 C 1.50699 * 109.47031 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00007 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99966 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00194 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46881 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46959 * 120.00104 * 16 14 12 19 19 H 1.48492 * 109.47496 * 240.00440 * 16 14 12 20 20 C 1.47787 * 122.90242 * 89.06087 * 6 5 4 21 21 C 1.54026 * 111.49855 * 318.17039 * 20 6 5 22 22 N 1.44647 * 109.71447 * 319.87580 * 21 20 6 23 23 C 1.46908 * 111.04415 * 217.94075 * 22 21 20 24 24 C 1.50693 * 109.46977 * 52.97317 * 23 22 21 25 25 C 1.38230 * 120.00258 * 263.21675 * 24 23 22 26 26 C 1.38234 * 120.00316 * 179.78803 * 25 24 23 27 27 C 1.38232 * 119.99802 * 0.44500 * 26 25 24 28 28 C 1.38238 * 120.00055 * 359.80654 * 27 26 25 29 29 C 1.38229 * 120.00108 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47257 * 302.33367 * 1 2 3 31 31 H 1.09001 * 109.47062 * 62.33100 * 1 2 3 32 32 H 1.09007 * 109.47216 * 182.33461 * 1 2 3 33 33 H 1.09004 * 109.42185 * 63.24301 * 4 2 1 34 34 H 1.08994 * 109.42538 * 303.40749 * 4 2 1 35 35 H 1.09003 * 109.46077 * 170.50547 * 5 4 2 36 36 H 1.08997 * 109.45605 * 50.53235 * 5 4 2 37 37 H 1.08995 * 109.47203 * 300.00014 * 10 7 6 38 38 H 1.08999 * 109.47037 * 60.00034 * 10 7 6 39 39 H 1.08995 * 109.47397 * 300.00171 * 11 10 7 40 40 H 1.08999 * 109.46990 * 60.00281 * 11 10 7 41 41 H 0.96996 * 120.00359 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.05725 * 78.66794 * 20 6 5 43 43 H 1.09000 * 109.06220 * 197.67003 * 20 6 5 44 44 H 1.09005 * 109.43525 * 80.03259 * 21 20 6 45 45 H 1.08998 * 109.43645 * 199.90361 * 21 20 6 46 46 H 1.09001 * 109.47047 * 172.97333 * 23 22 21 47 47 H 1.09001 * 109.47096 * 292.96999 * 23 22 21 48 48 H 1.08003 * 120.00147 * 0.02562 * 25 24 23 49 49 H 1.07996 * 120.00160 * 180.27422 * 26 25 24 50 50 H 1.08003 * 120.00659 * 179.83581 * 27 26 25 51 51 H 1.08001 * 120.00032 * 180.02562 * 28 27 26 52 52 H 1.07998 * 120.00564 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8747 1.0340 0.0000 4 6 1.9983 -0.6496 1.2393 5 6 3.5450 -0.5906 1.3087 6 7 4.1079 -1.4603 0.2988 7 16 4.4367 -3.0324 0.7022 8 8 3.5350 -3.3181 1.7626 9 8 4.3626 -3.7336 -0.5315 10 6 6.1449 -2.9955 1.3117 11 6 6.5707 -4.4067 1.7216 12 6 7.9895 -4.3759 2.2286 13 1 8.5333 -3.4431 2.2553 14 6 8.5938 -5.5387 2.6573 15 7 7.9322 -6.6748 2.6234 16 14 10.3528 -5.5007 3.2851 17 1 10.8712 -4.1106 3.2209 18 1 10.3868 -5.9768 4.6912 19 1 11.1983 -6.3841 2.4427 20 6 4.4019 -1.0079 -1.0771 21 6 3.2765 -0.1133 -1.6297 22 7 1.9912 -0.6431 -1.2301 23 6 1.0015 -0.4935 -2.3053 24 6 1.5475 -1.0897 -3.5771 25 6 2.1522 -0.2769 -4.5175 26 6 2.6570 -0.8244 -5.6821 27 6 2.5488 -2.1835 -5.9104 28 6 1.9394 -2.9956 -4.9723 29 6 1.4387 -2.4488 -3.8057 30 1 -0.3634 0.5496 0.8683 31 1 -0.3633 0.4772 -0.9102 32 1 -0.3634 -1.0269 0.0419 33 1 1.6744 -1.6904 1.2476 34 1 1.5766 -0.1327 2.1012 35 1 3.8770 -0.9163 2.2945 36 1 3.8775 0.4325 1.1332 37 1 6.8040 -2.6311 0.5238 38 1 6.2085 -2.3322 2.1743 39 1 5.9115 -4.7706 2.5097 40 1 6.5070 -5.0703 0.8593 41 1 8.3574 -7.4929 2.9246 42 1 5.3355 -0.4452 -1.0748 43 1 4.5132 -1.8794 -1.7222 44 1 3.3911 0.8974 -1.2379 45 1 3.3342 -0.0884 -2.7179 46 1 0.0824 -1.0095 -2.0275 47 1 0.7913 0.5646 -2.4610 48 1 2.2338 0.7854 -4.3407 49 1 3.1334 -0.1900 -6.4148 50 1 2.9408 -2.6110 -6.8215 51 1 1.8553 -4.0575 -5.1505 52 1 0.9622 -3.0831 -3.0729 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096433538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -53.155392 kcal Electronic energy + Delta-G solvation = -32540.944918 eV Core-core repulsion = 28438.833686 eV Total energy + Delta-G solvation = -4102.111232 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.10087 -39.56182 -38.15856 -36.97772 -36.57739 -35.90152 -34.67552 -33.12984 -32.34868 -31.74648 -29.68226 -29.17284 -27.58169 -26.06644 -24.67741 -23.66831 -23.43212 -22.53822 -21.95963 -20.70045 -19.65255 -18.96897 -18.29836 -17.81493 -17.56419 -17.16211 -16.80536 -16.56460 -16.42635 -16.26895 -15.94848 -15.52388 -15.22526 -14.95119 -14.65029 -14.46770 -14.29549 -14.27481 -13.85344 -13.73465 -13.69579 -13.49580 -13.32866 -13.09625 -13.06194 -12.95283 -12.94993 -12.78316 -12.64698 -12.60360 -12.28397 -12.27318 -12.10096 -11.91122 -11.84204 -11.74996 -11.64613 -11.54556 -11.44193 -11.06384 -10.67211 -9.80408 -9.70354 -9.60808 -9.07202 -8.27117 -6.41951 -0.62898 0.45045 0.54771 1.39752 1.41000 1.54423 1.85387 2.37292 2.76244 2.96119 3.05773 3.19231 3.26383 3.73838 3.85211 3.89075 3.98161 4.04931 4.07831 4.15109 4.17221 4.20542 4.30336 4.32054 4.45384 4.46705 4.58383 4.64379 4.68306 4.72837 4.74889 4.76629 4.81112 4.83107 4.85714 4.93792 4.98663 5.07828 5.16279 5.19953 5.24611 5.24787 5.29066 5.36343 5.49412 5.59507 5.66807 5.67686 5.74269 5.89655 6.04658 6.15097 6.30068 6.37421 6.71805 7.28393 8.85520 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.002755 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.019716 B =10161.080137 C =11478.418568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.090 3.910 3 H 0.064 0.936 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.973 5.973 7 S 2.607 3.393 8 O -0.993 6.993 9 O -0.996 6.996 10 C -0.593 4.593 11 C 0.022 3.978 12 C -0.539 4.539 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.114 3.886 21 C 0.045 3.955 22 N -0.546 5.546 23 C 0.100 3.900 24 C -0.093 4.093 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.137 4.137 29 C -0.116 4.116 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.143 0.857 49 H 0.145 0.855 50 H 0.136 0.864 51 H 0.122 0.878 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 22.230 -13.290 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.176 4.176 5 C -0.006 4.006 6 N -0.811 5.811 7 S 2.704 3.296 8 O -0.983 6.983 9 O -0.986 6.986 10 C -0.724 4.724 11 C -0.017 4.017 12 C -0.578 4.578 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.178 1.178 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.011 4.011 21 C -0.085 4.085 22 N -0.271 5.271 23 C -0.026 4.026 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.155 4.155 29 C -0.135 4.135 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.161 0.839 49 H 0.163 0.837 50 H 0.154 0.846 51 H 0.141 0.859 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.344 20.890 -13.246 28.594 hybrid contribution 1.117 -0.160 0.482 1.227 sum -13.227 20.730 -12.763 27.706 Atomic orbital electron populations 1.22275 0.94357 1.01972 1.03243 1.20555 0.95584 0.96205 0.89410 0.91842 1.21552 0.96315 1.01555 0.98189 1.21455 0.93221 0.96128 0.89792 1.56778 1.77140 1.29000 1.18220 1.04892 0.77440 0.73939 0.73280 1.93474 1.61839 1.83940 1.59055 1.93466 1.87465 1.72763 1.44894 1.30439 1.22552 1.06622 1.12767 1.18792 0.98169 0.89001 0.95694 1.21549 0.98083 0.95190 1.42992 0.90602 1.26167 1.03572 0.94913 0.95718 1.70116 1.39531 0.99794 1.48015 0.85228 0.77907 0.79037 0.77864 1.17808 1.20229 1.20257 1.22044 0.98691 0.99952 0.80463 1.22429 0.88257 0.96256 1.01571 1.60819 1.02851 1.59850 1.03574 1.21218 0.94998 0.99333 0.87066 1.19962 0.99460 0.93646 0.96238 1.21286 0.98117 1.00376 0.93782 1.21438 0.99660 0.95252 0.97876 1.21437 0.99007 0.94487 0.99721 1.21382 0.98989 1.00500 0.94629 1.21131 1.00025 0.95386 0.96930 0.90841 0.90880 0.93531 0.93697 0.88199 0.90634 0.87358 0.84489 0.84296 0.97821 0.97984 0.92350 0.89134 0.91339 0.91388 0.88758 0.89910 0.91855 0.83919 0.83675 0.84563 0.85947 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 7.85 71.98 0.56 -1.81 16 2 C 0.09 1.56 2.25 43.33 0.10 1.66 16 3 H 0.06 0.84 7.18 -2.39 -0.02 0.82 16 4 C -0.14 -2.94 5.12 29.55 0.15 -2.78 16 5 C 0.12 2.60 5.24 87.38 0.46 3.05 16 6 N -0.97 -26.63 2.76 -511.43 -1.41 -28.05 16 7 S 2.61 101.77 5.29 -56.49 -0.30 101.47 16 8 O -0.99 -44.01 16.11 -127.65 -2.06 -46.07 16 9 O -1.00 -45.43 16.35 -127.65 -2.09 -47.52 16 10 C -0.59 -23.90 6.12 71.98 0.44 -23.46 16 11 C 0.02 1.22 4.98 29.85 0.15 1.37 16 12 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 13 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 14 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 15 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 16 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 17 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.11 2.65 6.57 86.48 0.57 3.22 16 21 C 0.04 0.80 5.23 87.07 0.46 1.26 16 22 N -0.55 -11.20 4.23 -891.00 -3.77 -14.97 16 23 C 0.10 1.73 3.84 85.55 0.33 2.06 16 24 C -0.09 -1.83 4.42 -19.87 -0.09 -1.92 16 25 C -0.12 -1.84 7.70 22.27 0.17 -1.67 16 26 C -0.12 -1.95 10.05 22.27 0.22 -1.72 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 28 C -0.14 -3.08 10.05 22.27 0.22 -2.85 16 29 C -0.12 -2.81 9.73 22.27 0.22 -2.59 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.87 5.92 -2.39 -0.01 0.85 16 32 H 0.05 0.86 7.90 -2.38 -0.02 0.84 16 33 H 0.04 1.33 7.39 -2.38 -0.02 1.31 16 34 H 0.10 1.65 8.13 -2.39 -0.02 1.63 16 35 H 0.08 1.71 7.61 -2.39 -0.02 1.69 16 36 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 38 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.07 2.01 6.59 -2.39 -0.02 1.99 16 44 H 0.07 0.89 7.14 -2.38 -0.02 0.87 16 45 H 0.09 1.58 4.48 -2.39 -0.01 1.57 16 46 H 0.08 1.49 6.50 -2.39 -0.02 1.48 16 47 H 0.06 0.80 7.41 -2.39 -0.02 0.78 16 48 H 0.14 1.47 7.99 -2.91 -0.02 1.45 16 49 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 50 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 51 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 52 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -80.43 412.11 -1.55 -81.98 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.89 Total: 23.81 kcal Atomic # 6 Polarization: -63.62 SS G_CDS: 4.88 Total: -58.74 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -4.90 Total: -100.91 kcal Atomic # 8 Polarization: -89.44 SS G_CDS: -4.14 Total: -93.59 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 101.77 SS G_CDS: -0.30 Total: 101.47 kcal Total: -80.43 -1.55 -81.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.824 kcal (2) G-P(sol) polarization free energy of solvation -80.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds