Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00121 * 2 1 4 4 H 1.48498 * 109.47019 * 240.00534 * 3 2 1 5 5 H 1.48504 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47166 * 120.00252 * 3 2 1 7 7 C 1.37882 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99619 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47056 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99597 * 89.99725 * 10 9 7 12 12 O 1.21598 * 119.99905 * 186.94587 * 11 10 9 13 13 N 1.34773 * 120.00266 * 6.94693 * 11 10 9 14 14 C 1.40188 * 120.00115 * 184.16238 * 13 11 10 15 15 C 1.39366 * 120.42390 * 143.33531 * 14 13 11 16 16 C 1.38325 * 118.42427 * 180.02562 * 15 14 13 17 17 C 1.38900 * 119.18861 * 359.97438 * 16 15 14 18 18 O 1.35755 * 119.61319 * 180.02562 * 17 16 15 19 19 C 1.42907 * 117.00235 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47038 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99647 * 269.72260 * 20 19 18 22 22 C 1.38243 * 119.99979 * 179.76946 * 21 20 19 23 23 C 1.38236 * 119.99570 * 0.50616 * 22 21 20 24 24 C 1.38238 * 120.00081 * 359.74908 * 23 22 21 25 25 C 1.38234 * 120.00192 * 359.97438 * 24 23 22 26 26 N 1.32205 * 120.77905 * 0.02562 * 17 16 15 27 27 C 1.31956 * 121.71666 * 0.02562 * 26 17 16 28 28 C 1.46491 * 120.00132 * 270.00155 * 10 9 7 29 29 C 1.53005 * 117.49782 * 194.83147 * 28 10 9 30 30 C 1.53001 * 59.99977 * 252.51018 * 29 28 10 31 31 H 0.97001 * 120.00247 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47232 * 60.00214 * 9 7 2 33 33 H 1.09000 * 109.46906 * 299.99807 * 9 7 2 34 34 H 0.97001 * 120.00316 * 4.16071 * 13 11 10 35 35 H 1.07998 * 120.78702 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.41036 * 179.72484 * 16 15 14 37 37 H 1.09000 * 109.46508 * 299.99554 * 19 18 17 38 38 H 1.09003 * 109.46866 * 59.99384 * 19 18 17 39 39 H 1.08001 * 120.00642 * 359.97438 * 21 20 19 40 40 H 1.07992 * 120.00103 * 180.23095 * 22 21 20 41 41 H 1.07996 * 120.00171 * 179.72386 * 23 22 21 42 42 H 1.07995 * 120.00026 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00269 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.62965 * 180.02562 * 27 26 17 45 45 H 1.08998 * 115.54847 * 340.53560 * 28 10 9 46 46 H 1.08998 * 117.50135 * 359.97438 * 29 28 10 47 47 H 1.08997 * 117.49734 * 145.01759 * 29 28 10 48 48 H 1.09006 * 117.49463 * 252.51160 * 30 29 28 49 49 H 1.08996 * 117.51581 * 107.48810 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6418 -4.1254 1.1649 12 8 3.5244 -4.9618 1.1678 13 7 2.1024 -3.7110 2.3284 14 6 2.6174 -4.1784 3.5456 15 6 2.6863 -3.3351 4.6530 16 6 3.2023 -3.8392 5.8333 17 6 3.6311 -5.1597 5.8758 18 8 4.1384 -5.6634 7.0298 19 6 4.5631 -7.0278 7.0108 20 6 5.0938 -7.4077 8.3692 21 6 6.4352 -7.2412 8.6584 22 6 6.9212 -7.5852 9.9060 23 6 6.0676 -8.1055 10.8608 24 6 4.7271 -8.2769 10.5698 25 6 4.2401 -7.9275 9.3241 26 7 3.5509 -5.9318 4.8056 27 6 3.0655 -5.4852 3.6628 28 6 2.6780 -4.1689 -1.2710 29 6 3.3819 -5.5267 -1.2280 30 6 4.1909 -4.2534 -1.4831 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 1.3578 -3.0893 2.3236 35 1 2.3458 -2.3121 4.5910 36 1 3.2747 -3.2126 6.7100 37 1 3.7176 -7.6679 6.7586 38 1 5.3489 -7.1534 6.2659 39 1 7.1031 -6.8393 7.9108 40 1 7.9685 -7.4517 10.1332 41 1 6.4480 -8.3784 11.8340 42 1 4.0603 -8.6837 11.3156 43 1 3.1930 -8.0618 9.0966 44 1 3.0152 -6.1455 2.8096 45 1 2.0593 -3.9497 -2.1412 46 1 3.4919 -6.0060 -0.2552 47 1 3.2261 -6.2013 -2.0699 48 1 4.5674 -4.0903 -2.4930 49 1 4.8328 -3.8950 -0.6784 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096434149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = 47.865480 kcal Electronic energy + Delta-G solvation = -31653.262428 eV Core-core repulsion = 27354.661928 eV Total energy + Delta-G solvation = -4298.600501 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81889 -39.98410 -39.38359 -37.83285 -36.21422 -34.78342 -33.63079 -32.50924 -32.30107 -31.77770 -31.20234 -28.80275 -27.16958 -26.51027 -23.88289 -23.33511 -22.89680 -22.88065 -21.81353 -21.74903 -21.46314 -19.60287 -18.36984 -17.57799 -17.23495 -16.98743 -16.45321 -16.34013 -16.19961 -15.44584 -15.30945 -14.95620 -14.72614 -14.54539 -14.37192 -14.23345 -13.86063 -13.71427 -13.42247 -13.25251 -13.00166 -12.98274 -12.69278 -12.53822 -12.42407 -12.31023 -11.70776 -11.49986 -11.28936 -11.25291 -11.14701 -10.95079 -10.81015 -10.65921 -10.31637 -10.16259 -9.76753 -9.71645 -9.65868 -9.30927 -9.21571 -9.08845 -9.06941 -8.65585 -7.82737 -7.45864 -6.27750 -4.35904 0.92745 1.10792 1.33059 1.39303 2.98209 3.14354 3.19306 3.24341 3.28588 3.55101 3.66790 4.02560 4.21455 4.38529 4.49302 4.54724 4.56360 4.60931 4.71343 4.82736 5.04272 5.04979 5.09335 5.14735 5.19067 5.27472 5.38040 5.41415 5.44553 5.53622 5.65748 5.67333 5.74479 5.80295 5.93248 6.13450 6.15393 6.19638 6.21143 6.27234 6.30538 6.37326 6.55830 6.65367 6.67328 6.84403 6.96077 7.07783 7.27460 7.37942 7.63472 7.67915 7.92737 8.01629 8.41142 8.74063 9.09577 9.33093 10.78130 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.001915 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.394376 B =14618.807549 C =15857.221997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.581 5.581 11 C 0.711 3.289 12 O -0.596 6.596 13 N -0.677 5.677 14 C 0.098 3.902 15 C -0.072 4.072 16 C -0.169 4.169 17 C 0.289 3.711 18 O -0.304 6.304 19 C 0.114 3.886 20 C -0.093 4.093 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.096 4.096 26 N -0.524 5.524 27 C 0.138 3.862 28 C 0.104 3.896 29 C -0.203 4.203 30 C -0.188 4.188 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.417 0.583 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.174 0.826 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -13.270 15.141 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.123 3.877 10 N -0.312 5.312 11 C 0.414 3.586 12 O -0.478 6.478 13 N -0.327 5.327 14 C -0.001 4.001 15 C -0.100 4.100 16 C -0.190 4.190 17 C 0.110 3.890 18 O -0.212 6.212 19 C 0.038 3.962 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.114 4.114 26 N -0.247 5.247 27 C -0.021 4.021 28 C -0.002 4.002 29 C -0.240 4.240 30 C -0.227 4.227 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.257 0.743 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.191 0.809 45 H 0.143 0.857 46 H 0.155 0.845 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.902 -14.412 15.354 22.160 hybrid contribution -0.183 2.289 -0.324 2.320 sum 6.719 -12.122 15.029 20.444 Atomic orbital electron populations 1.69901 1.05962 1.27608 1.49511 1.24945 0.94878 0.99353 0.94612 0.86536 0.79533 0.82386 0.78934 1.20053 1.21118 1.20114 1.21462 0.93732 0.90248 1.52237 0.91974 1.19383 0.87279 0.82678 0.98380 1.46794 1.47046 1.35236 1.02077 1.15823 0.81130 0.81134 0.80481 1.90660 1.34027 1.37383 1.85725 1.42815 1.37167 1.50309 1.02432 1.18443 1.01552 0.93595 0.86487 1.21303 0.97583 0.99655 0.91448 1.20794 1.04807 0.93766 0.99606 1.19730 0.93737 0.90183 0.85325 1.86271 1.76213 1.28666 1.30080 1.21327 0.99920 0.81161 0.93752 1.19659 0.93963 1.00439 0.95244 1.21140 0.94974 0.98240 0.97029 1.21166 0.99957 0.99581 0.93541 1.21219 0.93803 0.98885 0.99316 1.21159 0.95758 1.00594 0.96775 1.21121 0.99560 0.97713 0.93009 1.67378 1.19741 1.37815 0.99770 1.22681 0.93220 0.92547 0.93620 1.21344 0.93688 0.98231 0.86919 1.23892 1.03836 0.91252 1.05023 1.23142 0.95392 1.02438 1.01727 0.92347 0.94049 0.95130 0.74305 0.83591 0.84135 0.90775 0.90749 0.85745 0.85829 0.85997 0.85843 0.85774 0.80906 0.85726 0.84499 0.90208 0.89557 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 13.29 55.43 0.74 -22.75 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.49 9.39 -34.44 -0.32 -13.81 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.24 5.42 5.16 -5.19 -0.03 5.40 16 10 N -0.58 -11.71 2.82 -173.17 -0.49 -12.20 16 11 C 0.71 14.11 7.92 -86.92 -0.69 13.42 16 12 O -0.60 -12.23 9.71 5.28 0.05 -12.18 16 13 N -0.68 -12.08 5.24 -14.09 -0.07 -12.15 16 14 C 0.10 1.61 6.29 -83.47 -0.53 1.09 16 15 C -0.07 -1.03 10.10 -39.13 -0.40 -1.43 16 16 C -0.17 -2.30 10.03 -39.30 -0.39 -2.69 16 17 C 0.29 4.31 7.49 -17.15 -0.13 4.18 16 18 O -0.30 -4.19 10.10 -18.97 -0.19 -4.38 16 19 C 0.11 1.33 5.43 36.00 0.20 1.52 16 20 C -0.09 -0.97 5.51 -104.63 -0.58 -1.55 16 21 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 23 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 26 N -0.52 -8.33 9.20 -13.18 -0.12 -8.45 16 27 C 0.14 2.29 9.86 -17.35 -0.17 2.12 16 28 C 0.10 1.89 6.62 -67.93 -0.45 1.44 16 29 C -0.20 -3.35 9.62 -26.73 -0.26 -3.61 16 30 C -0.19 -3.28 9.89 -26.73 -0.26 -3.54 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.03 0.68 6.08 -51.93 -0.32 0.37 16 34 H 0.42 7.33 6.46 -40.82 -0.26 7.07 16 35 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.17 2.99 6.36 -52.49 -0.33 2.66 16 45 H 0.13 2.09 8.10 -51.93 -0.42 1.67 16 46 H 0.14 2.54 5.14 -52.37 -0.27 2.27 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.09 1.84 7.68 -51.93 -0.40 1.44 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -28.46 412.29 -11.56 -40.02 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.61 Total: 13.30 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -6.06 Total: -2.55 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.05 Total: -55.56 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.14 Total: -16.56 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -28.46 -11.56 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096434149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.885 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds