Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48506 * 109.47176 * 270.00052 * 3 2 1 5 5 H 1.48508 * 109.46972 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99661 * 3 2 1 7 7 C 1.37874 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00304 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99803 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99679 * 90.00235 * 10 9 7 12 12 O 1.21589 * 119.99755 * 176.62553 * 11 10 9 13 13 N 1.34770 * 120.00209 * 356.62216 * 11 10 9 14 14 C 1.39951 * 120.00054 * 183.28786 * 13 11 10 15 15 C 1.38866 * 120.07062 * 323.16487 * 14 13 11 16 16 C 1.38109 * 119.92761 * 179.76524 * 15 14 13 17 17 C 1.38282 * 120.07155 * 0.50719 * 16 15 14 18 18 C 1.50700 * 119.93008 * 179.72267 * 17 16 15 19 19 N 1.46502 * 109.46929 * 270.02404 * 18 17 16 20 20 C 1.35770 * 119.62583 * 90.00224 * 19 18 17 21 21 C 1.35346 * 120.70091 * 180.02562 * 20 19 18 22 22 C 1.40191 * 119.95022 * 359.97438 * 21 20 19 23 23 C 1.36397 * 119.26669 * 359.97438 * 22 21 20 24 24 C 1.34657 * 119.62629 * 269.72753 * 19 18 17 25 25 O 1.22060 * 119.98473 * 359.97438 * 24 19 18 26 26 C 1.38279 * 120.14128 * 359.74552 * 17 16 15 27 27 C 1.38118 * 120.06905 * 0.02562 * 26 17 16 28 28 C 1.46497 * 119.99917 * 270.00187 * 10 9 7 29 29 C 1.52999 * 117.49903 * 200.60026 * 28 10 9 30 30 C 1.52996 * 60.00339 * 252.51383 * 29 28 10 31 31 H 0.96999 * 120.00379 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47311 * 60.00632 * 9 7 2 33 33 H 1.08998 * 109.47503 * 299.99916 * 9 7 2 34 34 H 0.97003 * 120.00180 * 3.29311 * 13 11 10 35 35 H 1.07996 * 120.03291 * 0.02562 * 15 14 13 36 36 H 1.08004 * 119.96445 * 180.25234 * 16 15 14 37 37 H 1.09003 * 109.47382 * 30.02072 * 18 17 16 38 38 H 1.09000 * 109.47109 * 150.02638 * 18 17 16 39 39 H 1.07997 * 119.64724 * 0.02562 * 20 19 18 40 40 H 1.08003 * 120.02215 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.36934 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.35031 * 180.02562 * 23 22 21 43 43 H 1.07994 * 119.96671 * 180.02562 * 26 17 16 44 44 H 1.07995 * 120.03567 * 179.97438 * 27 26 17 45 45 H 1.09000 * 115.55132 * 346.30946 * 28 10 9 46 46 H 1.09002 * 117.49847 * 0.02562 * 29 28 10 47 47 H 1.09004 * 117.49682 * 145.01815 * 29 28 10 48 48 H 1.09001 * 117.49471 * 252.51098 * 30 29 28 49 49 H 1.09000 * 117.51800 * 107.47964 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2250 -3.2103 -1.1663 12 8 4.6882 -4.3345 -1.1673 13 7 3.9366 -2.5993 -2.3324 14 6 4.1055 -3.2835 -3.5414 15 6 5.1720 -4.1582 -3.7029 16 6 5.3331 -4.8356 -4.8956 17 6 4.4398 -4.6357 -5.9321 18 6 4.6222 -5.3719 -7.2343 19 7 5.4644 -4.5764 -8.1311 20 6 6.8118 -4.7410 -8.1082 21 6 7.6105 -4.0172 -8.9269 22 6 7.0469 -3.0863 -9.8107 23 6 5.6930 -2.9230 -9.8330 24 6 4.8928 -3.6941 -8.9727 25 8 3.6795 -3.5613 -8.9855 26 6 3.3798 -3.7615 -5.7763 27 6 3.2104 -3.0846 -4.5844 28 6 4.2435 -3.2662 1.2697 29 6 5.1782 -4.4772 1.2464 30 6 3.6721 -4.6768 1.4270 31 1 -0.4851 0.8400 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6804 -0.8888 34 1 3.6120 -1.6851 -2.3337 35 1 5.8722 -4.3116 -2.8951 36 1 6.1600 -5.5190 -5.0204 37 1 5.1001 -6.3330 -7.0446 38 1 3.6497 -5.5350 -7.6988 39 1 7.2511 -5.4572 -7.4296 40 1 8.6811 -4.1568 -8.8992 41 1 7.6779 -2.5048 -10.4666 42 1 5.2402 -2.2109 -10.5073 43 1 2.6836 -3.6079 -6.5875 44 1 2.3826 -2.4017 -4.4635 45 1 4.2651 -2.6303 2.1547 46 1 5.6122 -4.7597 0.2872 47 1 5.8151 -4.6382 2.1162 48 1 3.3181 -4.9690 2.4156 49 1 3.1146 -5.0905 0.5867 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096434172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = 53.485495 kcal Electronic energy + Delta-G solvation = -32528.265687 eV Core-core repulsion = 28229.908888 eV Total energy + Delta-G solvation = -4298.356799 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.55332 -40.48432 -38.88773 -37.03468 -36.50190 -35.14811 -34.68143 -33.41782 -32.29813 -30.80021 -30.40977 -29.86861 -27.86505 -26.42690 -24.16471 -23.32580 -22.79246 -22.55965 -22.28021 -21.84767 -20.99061 -19.45051 -17.84015 -17.51831 -17.43500 -17.11180 -16.81341 -16.51236 -16.43161 -15.46941 -15.25093 -15.04463 -14.82145 -14.69225 -14.34982 -14.31530 -14.04679 -13.63010 -13.37069 -13.25847 -12.83943 -12.72434 -12.51156 -12.44384 -12.36329 -12.31288 -12.06386 -12.00547 -11.67044 -11.47163 -11.04590 -11.00106 -10.86570 -10.71384 -10.33152 -10.13642 -10.11473 -9.87439 -9.80109 -9.65916 -9.14504 -8.82257 -8.72261 -8.18195 -7.97604 -7.53135 -6.29564 -4.33117 0.61020 1.28248 1.58626 1.67734 2.56233 3.04151 3.10139 3.17897 3.21268 3.46986 3.51704 4.01755 4.17609 4.27709 4.32210 4.38243 4.55467 4.63282 4.70288 4.87366 4.98518 4.99660 5.04348 5.12196 5.20586 5.33631 5.37759 5.47067 5.56717 5.59912 5.72970 5.75461 5.83336 5.84198 6.03429 6.05732 6.16212 6.20684 6.27659 6.28972 6.37841 6.43013 6.51355 6.59052 6.63986 6.75201 6.90934 6.91167 7.20648 7.29977 7.31467 7.51519 7.89214 8.16309 8.42916 8.78095 9.03374 9.28260 10.82830 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.002472 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.919250 B =11326.421627 C =12849.531887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.211 3.789 10 N -0.576 5.576 11 C 0.713 3.287 12 O -0.591 6.591 13 N -0.683 5.683 14 C 0.194 3.806 15 C -0.126 4.126 16 C -0.086 4.086 17 C -0.151 4.151 18 C 0.138 3.862 19 N -0.489 5.489 20 C 0.141 3.859 21 C -0.240 4.240 22 C -0.018 4.018 23 C -0.246 4.246 24 C 0.512 3.488 25 O -0.549 6.549 26 C -0.069 4.069 27 C -0.152 4.152 28 C 0.104 3.896 29 C -0.202 4.202 30 C -0.187 4.187 31 H 0.268 0.732 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.416 0.584 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.160 0.840 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.137 0.863 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.733 -8.524 -14.094 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.090 3.910 10 N -0.307 5.307 11 C 0.416 3.584 12 O -0.472 6.472 13 N -0.331 5.331 14 C 0.097 3.903 15 C -0.147 4.147 16 C -0.105 4.105 17 C -0.153 4.153 18 C 0.017 3.983 19 N -0.199 5.199 20 C 0.013 3.987 21 C -0.264 4.264 22 C -0.040 4.040 23 C -0.268 4.268 24 C 0.314 3.686 25 O -0.431 6.431 26 C -0.088 4.088 27 C -0.173 4.173 28 C -0.002 4.002 29 C -0.239 4.239 30 C -0.225 4.225 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.256 0.744 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.177 0.823 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.026 -9.050 -13.960 23.101 hybrid contribution 0.007 1.601 0.231 1.617 sum 16.033 -7.450 -13.729 22.384 Atomic orbital electron populations 1.69887 1.06229 1.27323 1.48820 1.24897 0.94757 0.98856 0.94173 0.86959 0.80454 0.84023 0.78995 1.19786 1.20675 1.18868 1.21380 0.88812 0.95176 1.52995 0.90173 1.19783 0.96160 0.77596 0.97431 1.46507 1.66287 1.15364 1.02513 1.15789 0.78631 0.83626 0.80347 1.90669 1.52078 1.18610 1.85865 1.42963 1.69037 1.17906 1.03231 1.17687 0.93265 0.94189 0.85117 1.21214 0.97502 0.98219 0.97743 1.20789 0.98181 0.99007 0.92547 1.19698 0.98506 1.02044 0.95041 1.20820 0.97279 0.92692 0.87489 1.45729 1.06772 1.34593 1.32760 1.21977 0.82630 0.97413 0.96726 1.20625 1.00552 1.02812 1.02371 1.21420 0.94938 0.93420 0.94203 1.22146 0.94286 1.05593 1.04805 1.17162 0.89100 0.80882 0.81414 1.90954 1.13817 1.67822 1.70510 1.20917 0.96935 0.94265 0.96654 1.21055 0.99208 1.03288 0.93721 1.21336 1.04221 0.88047 0.86562 1.23926 0.93314 1.01828 1.04842 1.23148 0.96666 1.00496 1.02229 0.92218 0.94183 0.96046 0.74438 0.84245 0.86290 0.88471 0.87510 0.82289 0.83945 0.85035 0.83668 0.85186 0.85219 0.85583 0.84549 0.90210 0.89332 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.96 55.43 0.77 -24.63 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 19.24 27.47 -169.99 -4.67 14.58 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 7 C -0.55 -14.06 9.94 -34.44 -0.34 -14.40 16 8 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 9 C 0.21 4.54 3.99 -5.19 -0.02 4.52 16 10 N -0.58 -11.63 2.83 -173.17 -0.49 -12.12 16 11 C 0.71 14.29 7.83 -86.93 -0.68 13.61 16 12 O -0.59 -12.04 9.68 5.29 0.05 -11.99 16 13 N -0.68 -12.68 5.20 -14.22 -0.07 -12.76 16 14 C 0.19 3.29 6.26 -83.68 -0.52 2.77 16 15 C -0.13 -1.93 8.68 -39.40 -0.34 -2.27 16 16 C -0.09 -1.05 9.69 -39.61 -0.38 -1.43 16 17 C -0.15 -1.85 5.46 -104.59 -0.57 -2.42 16 18 C 0.14 1.32 5.46 -5.19 -0.03 1.29 16 19 N -0.49 -4.82 2.57 -121.06 -0.31 -5.13 16 20 C 0.14 0.96 10.28 -16.84 -0.17 0.78 16 21 C -0.24 -1.49 10.01 -39.88 -0.40 -1.89 16 22 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 23 C -0.25 -2.49 9.99 -39.38 -0.39 -2.88 16 24 C 0.51 6.47 7.40 -15.45 -0.11 6.35 16 25 O -0.55 -8.87 16.12 4.86 0.08 -8.79 16 26 C -0.07 -0.99 9.69 -39.61 -0.38 -1.37 16 27 C -0.15 -2.42 9.97 -39.39 -0.39 -2.81 16 28 C 0.10 1.88 6.63 -67.93 -0.45 1.43 16 29 C -0.20 -3.28 9.65 -26.73 -0.26 -3.54 16 30 C -0.19 -3.26 9.85 -26.73 -0.26 -3.52 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.84 7.09 -51.93 -0.37 0.48 16 33 H 0.02 0.44 5.88 -51.93 -0.31 0.14 16 34 H 0.42 7.71 6.60 -40.82 -0.27 7.44 16 35 H 0.14 2.26 6.40 -52.49 -0.34 1.92 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.10 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.11 1.13 7.32 -51.93 -0.38 0.75 16 39 H 0.16 0.57 8.04 -52.49 -0.42 0.14 16 40 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.13 1.89 7.54 -52.49 -0.40 1.49 16 44 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.13 2.08 8.09 -51.93 -0.42 1.66 16 46 H 0.14 2.48 5.19 -52.21 -0.27 2.21 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.09 1.87 7.55 -51.93 -0.39 1.47 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -32.65 405.52 -11.27 -43.92 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.52 Total: 15.19 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -6.22 Total: -4.37 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.10 Total: -54.64 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.13 Total: -20.78 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.58 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.65 -11.27 -43.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096434172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.406 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds