Wall clock time and date at job start Tue Mar 31 2020 06:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48506 * 109.47176 * 270.00052 * 3 2 1 5 5 H 1.48508 * 109.46972 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99661 * 3 2 1 7 7 C 1.37874 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00304 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99803 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99679 * 90.00235 * 10 9 7 12 12 O 1.21589 * 119.99755 * 176.62553 * 11 10 9 13 13 N 1.34770 * 120.00209 * 356.62216 * 11 10 9 14 14 C 1.39951 * 120.00054 * 183.28786 * 13 11 10 15 15 C 1.38866 * 120.07062 * 323.16487 * 14 13 11 16 16 C 1.38109 * 119.92761 * 179.76524 * 15 14 13 17 17 C 1.38282 * 120.07155 * 0.50719 * 16 15 14 18 18 C 1.50700 * 119.93008 * 179.72267 * 17 16 15 19 19 N 1.46502 * 109.46929 * 270.02404 * 18 17 16 20 20 C 1.35770 * 119.62583 * 90.00224 * 19 18 17 21 21 C 1.35346 * 120.70091 * 180.02562 * 20 19 18 22 22 C 1.40191 * 119.95022 * 359.97438 * 21 20 19 23 23 C 1.36397 * 119.26669 * 359.97438 * 22 21 20 24 24 C 1.34657 * 119.62629 * 269.72753 * 19 18 17 25 25 O 1.22060 * 119.98473 * 359.97438 * 24 19 18 26 26 C 1.38279 * 120.14128 * 359.74552 * 17 16 15 27 27 C 1.38118 * 120.06905 * 0.02562 * 26 17 16 28 28 C 1.46497 * 119.99917 * 270.00187 * 10 9 7 29 29 C 1.52999 * 117.49903 * 200.60026 * 28 10 9 30 30 C 1.52996 * 60.00339 * 252.51383 * 29 28 10 31 31 H 0.96999 * 120.00379 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47311 * 60.00632 * 9 7 2 33 33 H 1.08998 * 109.47503 * 299.99916 * 9 7 2 34 34 H 0.97003 * 120.00180 * 3.29311 * 13 11 10 35 35 H 1.07996 * 120.03291 * 0.02562 * 15 14 13 36 36 H 1.08004 * 119.96445 * 180.25234 * 16 15 14 37 37 H 1.09003 * 109.47382 * 30.02072 * 18 17 16 38 38 H 1.09000 * 109.47109 * 150.02638 * 18 17 16 39 39 H 1.07997 * 119.64724 * 0.02562 * 20 19 18 40 40 H 1.08003 * 120.02215 * 179.97438 * 21 20 19 41 41 H 1.08000 * 120.36934 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.35031 * 180.02562 * 23 22 21 43 43 H 1.07994 * 119.96671 * 180.02562 * 26 17 16 44 44 H 1.07995 * 120.03567 * 179.97438 * 27 26 17 45 45 H 1.09000 * 115.55132 * 346.30946 * 28 10 9 46 46 H 1.09002 * 117.49847 * 0.02562 * 29 28 10 47 47 H 1.09004 * 117.49682 * 145.01815 * 29 28 10 48 48 H 1.09001 * 117.49471 * 252.51098 * 30 29 28 49 49 H 1.09000 * 117.51800 * 107.47964 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2250 -3.2103 -1.1663 12 8 4.6882 -4.3345 -1.1673 13 7 3.9366 -2.5993 -2.3324 14 6 4.1055 -3.2835 -3.5414 15 6 5.1720 -4.1582 -3.7029 16 6 5.3331 -4.8356 -4.8956 17 6 4.4398 -4.6357 -5.9321 18 6 4.6222 -5.3719 -7.2343 19 7 5.4644 -4.5764 -8.1311 20 6 6.8118 -4.7410 -8.1082 21 6 7.6105 -4.0172 -8.9269 22 6 7.0469 -3.0863 -9.8107 23 6 5.6930 -2.9230 -9.8330 24 6 4.8928 -3.6941 -8.9727 25 8 3.6795 -3.5613 -8.9855 26 6 3.3798 -3.7615 -5.7763 27 6 3.2104 -3.0846 -4.5844 28 6 4.2435 -3.2662 1.2697 29 6 5.1782 -4.4772 1.2464 30 6 3.6721 -4.6768 1.4270 31 1 -0.4851 0.8400 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6804 -0.8888 34 1 3.6120 -1.6851 -2.3337 35 1 5.8722 -4.3116 -2.8951 36 1 6.1600 -5.5190 -5.0204 37 1 5.1001 -6.3330 -7.0446 38 1 3.6497 -5.5350 -7.6988 39 1 7.2511 -5.4572 -7.4296 40 1 8.6811 -4.1568 -8.8992 41 1 7.6779 -2.5048 -10.4666 42 1 5.2402 -2.2109 -10.5073 43 1 2.6836 -3.6079 -6.5875 44 1 2.3826 -2.4017 -4.4635 45 1 4.2651 -2.6303 2.1547 46 1 5.6122 -4.7597 0.2872 47 1 5.8151 -4.6382 2.1162 48 1 3.3181 -4.9690 2.4156 49 1 3.1146 -5.0905 0.5867 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096434172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:55 Heat of formation + Delta-G solvation = 35.034390 kcal Electronic energy + Delta-G solvation = -32529.065787 eV Core-core repulsion = 28229.908888 eV Total energy + Delta-G solvation = -4299.156899 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.33639 -41.90140 -40.10034 -37.93474 -37.76365 -36.53387 -35.85597 -34.83229 -34.07065 -31.95257 -31.40140 -30.64069 -29.68884 -27.42127 -24.97415 -24.59176 -24.15884 -23.84015 -23.40605 -23.20154 -22.12227 -20.90040 -19.14971 -18.88111 -18.50284 -18.40437 -18.11955 -17.40379 -17.19367 -16.84663 -16.63557 -16.28741 -16.01158 -15.92490 -15.47893 -15.41772 -15.00700 -14.96791 -14.74054 -14.52590 -14.37815 -13.98762 -13.92149 -13.65730 -13.42580 -13.28245 -13.14824 -13.10379 -12.68238 -12.65296 -12.51071 -12.36509 -12.29156 -12.15878 -11.82268 -11.61071 -11.27071 -11.19285 -11.00435 -10.92218 -10.85463 -10.58562 -9.90564 -9.38810 -8.96886 -8.87844 -8.34767 -6.44089 -0.02579 0.17216 0.41956 1.00895 1.36605 1.37758 1.47285 1.59748 1.77265 2.09581 2.29401 2.75069 2.80608 2.84435 2.98532 3.16361 3.67020 3.75796 3.89580 3.93579 3.98964 4.02440 4.10569 4.13533 4.23761 4.27224 4.38813 4.42763 4.51351 4.53382 4.56846 4.61664 4.69214 4.71000 4.78983 4.86054 5.04946 5.08891 5.14163 5.22053 5.25879 5.31955 5.35674 5.41677 5.46350 5.53593 5.63495 5.73858 5.76746 5.99814 6.06100 6.16938 6.19048 6.61512 6.84216 7.07823 7.21883 7.50860 8.81687 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.002472 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.919250 B =11326.421627 C =12849.531887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.234 1.234 7 C -0.542 4.542 8 H 0.025 0.975 9 C 0.220 3.780 10 N -0.584 5.584 11 C 0.706 3.294 12 O -0.598 6.598 13 N -0.686 5.686 14 C 0.164 3.836 15 C -0.133 4.133 16 C -0.068 4.068 17 C -0.137 4.137 18 C 0.138 3.862 19 N -0.488 5.488 20 C 0.135 3.865 21 C -0.236 4.236 22 C 0.004 3.996 23 C -0.289 4.289 24 C 0.493 3.507 25 O -0.608 6.608 26 C -0.079 4.079 27 C -0.167 4.167 28 C 0.080 3.920 29 C -0.174 4.174 30 C -0.195 4.195 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.412 0.588 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.204 0.796 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.145 0.855 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.957 -9.367 -14.224 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.157 1.157 7 C -0.580 4.580 8 H 0.043 0.957 9 C 0.098 3.902 10 N -0.315 5.315 11 C 0.409 3.591 12 O -0.480 6.480 13 N -0.334 5.334 14 C 0.069 3.931 15 C -0.153 4.153 16 C -0.087 4.087 17 C -0.139 4.139 18 C 0.018 3.982 19 N -0.196 5.196 20 C 0.009 3.991 21 C -0.258 4.258 22 C -0.018 4.018 23 C -0.311 4.311 24 C 0.298 3.702 25 O -0.496 6.496 26 C -0.098 4.098 27 C -0.188 4.188 28 C -0.024 4.024 29 C -0.211 4.211 30 C -0.234 4.234 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.151 0.849 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.221 0.779 40 H 0.198 0.802 41 H 0.180 0.820 42 H 0.155 0.845 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.162 0.838 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.320 -9.939 -14.104 27.427 hybrid contribution -1.563 1.696 0.166 2.313 sum 19.756 -8.243 -13.938 25.545 Atomic orbital electron populations 1.70064 1.08546 1.28474 1.50975 1.25845 0.95473 1.03198 0.93544 0.85789 0.79914 0.78149 0.79634 1.18842 1.21073 1.15723 1.21470 0.91213 0.93030 1.52293 0.95706 1.19612 0.92957 0.78968 0.98706 1.46561 1.66382 1.15119 1.03431 1.15956 0.78770 0.83726 0.80652 1.90657 1.52512 1.18688 1.86099 1.42959 1.68987 1.17789 1.03616 1.17924 0.94736 0.95760 0.84701 1.21292 0.96822 0.98313 0.98901 1.21199 0.98762 0.98174 0.90579 1.19997 0.96967 1.00457 0.96458 1.20916 0.97667 0.94001 0.85618 1.45674 1.08200 1.33841 1.31926 1.22801 0.80977 0.98019 0.97350 1.21167 1.02365 1.01361 1.00934 1.21849 0.93772 0.92591 0.93564 1.22114 0.95727 1.07077 1.06167 1.17605 0.88766 0.81607 0.82269 1.90912 1.16042 1.70009 1.72602 1.20976 0.98058 0.95100 0.95708 1.21018 0.99254 1.03986 0.94528 1.21733 1.05689 0.88658 0.86352 1.23850 0.92519 0.99352 1.05397 1.23125 0.97803 1.00373 1.02104 0.92218 0.92518 0.94363 0.74993 0.84924 0.81386 0.83667 0.89213 0.77911 0.80204 0.82034 0.84465 0.86235 0.86653 0.83798 0.86256 0.86638 0.87062 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.02 1.00 5.47 84.65 0.46 1.47 16 3 Si 0.94 39.55 27.47 68.60 1.88 41.43 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.23 -8.66 6.54 99.48 0.65 -8.01 16 7 C -0.54 -28.95 9.94 25.60 0.25 -28.70 16 8 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 9 C 0.22 9.35 3.99 85.63 0.34 9.69 16 10 N -0.58 -23.71 2.83 -820.05 -2.32 -26.03 16 11 C 0.71 28.86 7.83 179.06 1.40 30.26 16 12 O -0.60 -24.58 9.68 -4.00 -0.04 -24.62 16 13 N -0.69 -26.44 5.20 -317.18 -1.65 -28.09 16 14 C 0.16 5.75 6.26 38.15 0.24 5.99 16 15 C -0.13 -3.93 8.68 22.39 0.19 -3.74 16 16 C -0.07 -1.45 9.69 22.25 0.22 -1.24 16 17 C -0.14 -3.16 5.46 -19.84 -0.11 -3.27 16 18 C 0.14 2.33 5.46 85.63 0.47 2.80 16 19 N -0.49 -8.56 2.57 -655.06 -1.68 -10.24 16 20 C 0.14 1.20 10.28 83.42 0.86 2.05 16 21 C -0.24 -1.77 10.01 22.08 0.22 -1.55 16 22 C 0.00 0.05 10.10 22.31 0.23 0.27 16 23 C -0.29 -5.83 9.99 22.40 0.22 -5.60 16 24 C 0.49 12.66 7.40 84.82 0.63 13.29 16 25 O -0.61 -21.22 16.12 -5.51 -0.09 -21.31 16 26 C -0.08 -2.39 9.69 22.25 0.22 -2.18 16 27 C -0.17 -5.70 9.97 22.39 0.22 -5.48 16 28 C 0.08 2.84 6.63 44.99 0.30 3.14 16 29 C -0.17 -5.34 9.65 30.59 0.30 -5.04 16 30 C -0.20 -6.79 9.85 30.59 0.30 -6.49 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.06 2.26 7.09 -2.39 -0.02 2.24 16 33 H 0.04 1.53 5.88 -2.39 -0.01 1.51 16 34 H 0.41 15.98 6.60 -92.71 -0.61 15.37 16 35 H 0.13 4.14 6.40 -2.91 -0.02 4.12 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.15 1.07 7.96 -2.39 -0.02 1.05 16 38 H 0.09 1.89 7.32 -2.39 -0.02 1.87 16 39 H 0.20 -0.04 8.04 -2.91 -0.02 -0.06 16 40 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 41 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.12 3.83 7.54 -2.91 -0.02 3.81 16 44 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 45 H 0.14 4.48 8.09 -2.39 -0.02 4.46 16 46 H 0.12 4.19 5.19 -6.88 -0.04 4.15 16 47 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 48 H 0.11 3.28 8.14 -2.39 -0.02 3.27 16 49 H 0.06 2.47 7.55 -2.39 -0.02 2.45 16 Total: -1.00 -79.91 405.52 3.66 -76.26 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: 0.30 Total: 43.04 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.96 Total: 5.68 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.36 Total: -120.48 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.13 Total: -45.94 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.88 Total: 41.43 kcal Total: -79.91 3.66 -76.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096434172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.291 kcal (2) G-P(sol) polarization free energy of solvation -79.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds