Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47287 * 2 1 4 4 N 1.46503 * 109.47219 * 240.00347 * 2 1 3 5 5 C 1.39934 * 120.00555 * 84.99445 * 4 2 1 6 6 C 1.38890 * 120.18916 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.26817 * 180.42399 * 6 5 4 8 8 C 1.39282 * 120.34396 * 359.49172 * 7 6 5 9 9 C 1.38869 * 118.99402 * 0.20473 * 8 7 6 10 10 C 1.37721 * 120.85776 * 0.15442 * 9 8 7 11 11 C 1.51664 * 107.04876 * 180.41272 * 9 8 7 12 12 C 1.54704 * 101.93340 * 15.48911 * 11 9 8 13 13 O 1.36259 * 129.79089 * 179.56235 * 8 7 6 14 14 C 1.50701 * 109.47245 * 120.00489 * 2 1 3 15 15 O 1.21279 * 120.00336 * 93.74011 * 14 2 1 16 16 N 1.34776 * 119.99545 * 273.73301 * 14 2 1 17 17 C 1.46508 * 120.00280 * 5.38796 * 16 14 2 18 18 C 1.50698 * 109.46725 * 91.73274 * 17 16 14 19 19 H 1.07997 * 120.00508 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00149 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99709 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00513 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47240 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47126 * 119.99826 * 22 20 18 25 25 H 1.48507 * 109.47241 * 239.99915 * 22 20 18 26 26 C 1.39926 * 120.00169 * 185.38733 * 16 14 2 27 27 C 1.38869 * 120.07196 * 187.74102 * 26 16 14 28 28 C 1.38122 * 119.92392 * 179.76501 * 27 26 16 29 29 C 1.38279 * 120.07290 * 0.48607 * 28 27 26 30 30 C 1.38284 * 120.14156 * 359.76659 * 29 28 27 31 31 C 1.38117 * 120.06581 * 359.97438 * 30 29 28 32 32 H 1.08997 * 109.47026 * 54.21185 * 1 2 3 33 33 H 1.08999 * 109.46661 * 174.21729 * 1 2 3 34 34 H 1.09004 * 109.46499 * 294.21302 * 1 2 3 35 35 H 0.97006 * 119.99444 * 265.00058 * 4 2 1 36 36 H 1.07997 * 119.86680 * 0.14565 * 6 5 4 37 37 H 1.08003 * 119.83063 * 179.74752 * 7 6 5 38 38 H 1.07999 * 120.03679 * 179.76505 * 10 9 8 39 39 H 1.08994 * 110.93521 * 133.64692 * 11 9 8 40 40 H 1.09003 * 110.93584 * 257.29748 * 11 9 8 41 41 H 1.08999 * 110.74453 * 92.98325 * 12 11 9 42 42 H 1.09000 * 110.74601 * 216.15303 * 12 11 9 43 43 H 1.08991 * 109.47267 * 211.73289 * 17 16 14 44 44 H 1.09001 * 109.46717 * 331.73561 * 17 16 14 45 45 H 0.96994 * 119.99960 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.03830 * 359.97438 * 27 26 16 47 47 H 1.08008 * 119.95787 * 180.25705 * 28 27 26 48 48 H 1.08000 * 119.92445 * 179.74708 * 29 28 27 49 49 H 1.07995 * 119.96559 * 179.97438 * 30 29 28 50 50 H 1.08006 * 120.02515 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1520 0.0075 -2.4017 6 6 1.8232 1.3552 -2.4684 7 6 1.9459 2.0425 -3.6574 8 6 2.4104 1.3949 -4.7997 9 6 2.7427 0.0488 -4.7222 10 6 2.6147 -0.6434 -3.5385 11 6 3.2195 -0.3715 -6.0993 12 6 3.4743 0.9941 -6.7802 13 8 2.5973 1.8771 -6.0604 14 6 2.0324 -0.7105 1.2304 15 8 2.2991 -1.8926 1.1817 16 7 2.1853 -0.0322 2.3849 17 6 1.7530 1.3646 2.4768 18 6 0.3301 1.4185 2.9702 19 1 -0.1991 0.5039 3.1935 20 6 -0.2963 2.6355 3.1366 21 7 0.3482 3.7493 2.8652 22 14 -2.0598 2.7024 3.7489 23 1 -2.5561 1.3221 3.9805 24 1 -2.1136 3.4681 5.0202 25 1 -2.9118 3.3702 2.7323 26 6 2.7571 -0.6619 3.4960 27 6 2.7698 -0.0222 4.7284 28 6 3.3306 -0.6487 5.8242 29 6 3.8881 -1.9073 5.6928 30 6 3.8817 -2.5448 4.4657 31 6 3.3176 -1.9259 3.3673 32 1 -0.3633 0.6010 -0.8336 33 1 -0.3632 -1.0224 -0.1035 34 1 -0.3632 0.4215 0.9373 35 1 2.2491 -1.6318 -1.1526 36 1 1.4657 1.8660 -1.5865 37 1 1.6844 3.0894 -3.7023 38 1 2.8734 -1.6910 -3.4941 39 1 4.1401 -0.9512 -6.0325 40 1 2.4461 -0.9313 -6.6252 41 1 4.5138 1.2983 -6.6582 42 1 3.2061 0.9551 -7.8359 43 1 2.3992 1.9000 3.1722 44 1 1.8141 1.8293 1.4926 45 1 -0.0925 4.6054 2.9819 46 1 2.3386 0.9626 4.8308 47 1 3.3371 -0.1533 6.7840 48 1 4.3296 -2.3932 6.5502 49 1 4.3182 -3.5276 4.3661 50 1 3.3134 -2.4243 2.4091 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096436890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = 10.017352 kcal Electronic energy + Delta-G solvation = -32820.128527 eV Core-core repulsion = 28585.312719 eV Total energy + Delta-G solvation = -4234.815808 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95417 -40.46694 -38.47954 -37.62078 -35.44992 -34.92705 -32.81908 -32.58978 -31.23168 -30.37520 -29.38067 -28.95233 -27.60986 -27.43738 -24.20824 -23.57932 -23.49664 -22.23744 -22.00695 -21.54581 -20.61899 -19.04136 -17.56995 -17.29563 -17.03532 -16.67201 -16.55408 -16.21739 -16.04878 -15.29682 -14.97030 -14.84899 -14.43868 -14.09329 -13.88379 -13.64247 -13.42415 -13.37604 -13.19753 -12.98064 -12.87486 -12.78417 -12.68058 -12.41895 -12.31795 -12.07288 -11.80925 -11.75214 -11.69014 -11.31162 -11.23701 -11.10412 -11.02900 -10.82100 -10.63909 -10.58135 -10.35997 -10.14240 -9.39601 -9.26873 -8.89145 -8.77406 -8.69752 -8.40268 -7.30487 -6.98184 -6.35919 -4.44436 1.40749 1.67248 1.76747 1.94121 3.00527 3.12971 3.17219 3.23269 3.28567 3.40556 3.81507 3.90725 4.19479 4.38696 4.42621 4.59538 4.82141 4.86426 4.96468 4.98149 5.20403 5.26892 5.34313 5.40007 5.44458 5.49738 5.55957 5.56845 5.60891 5.65188 5.78788 5.96269 5.99415 6.06438 6.09066 6.09775 6.18707 6.31656 6.43811 6.45925 6.52035 6.63706 6.66398 6.77115 6.82102 6.92222 6.98172 7.06399 7.18749 7.21290 7.48702 7.56865 7.70380 7.78404 7.92350 7.98342 8.49446 8.65321 9.23271 10.70193 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.002895 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.171408 B = 9669.812041 C =11996.840242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 H 0.108 0.892 4 N -0.731 5.731 5 C 0.207 3.793 6 C -0.164 4.164 7 C -0.082 4.082 8 C 0.035 3.965 9 C -0.128 4.128 10 C -0.150 4.150 11 C -0.110 4.110 12 C 0.053 3.947 13 O -0.310 6.310 14 C 0.518 3.482 15 O -0.542 6.542 16 N -0.530 5.530 17 C 0.224 3.776 18 C -0.541 4.541 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.884 5.884 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 C 0.168 3.832 27 C -0.141 4.141 28 C -0.105 4.105 29 C -0.159 4.159 30 C -0.110 4.110 31 C -0.173 4.173 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.405 0.595 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.268 0.732 46 H 0.140 0.860 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -6.170 -10.382 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 H 0.125 0.875 4 N -0.363 5.363 5 C 0.103 3.897 6 C -0.187 4.187 7 C -0.102 4.102 8 C -0.011 4.011 9 C -0.129 4.129 10 C -0.173 4.173 11 C -0.147 4.147 12 C -0.022 4.022 13 O -0.225 6.225 14 C 0.307 3.693 15 O -0.423 6.423 16 N -0.248 5.248 17 C 0.106 3.894 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.206 1.206 26 C 0.072 3.928 27 C -0.161 4.161 28 C -0.124 4.124 29 C -0.179 4.179 30 C -0.128 4.128 31 C -0.193 4.193 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.242 0.758 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.158 0.842 47 H 0.136 0.864 48 H 0.129 0.871 49 H 0.132 0.868 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.936 -6.186 -10.427 13.499 hybrid contribution -0.859 -0.215 0.552 1.043 sum 5.077 -6.401 -9.875 12.816 Atomic orbital electron populations 1.22343 0.92467 1.02434 1.05583 1.20749 0.96266 0.97087 0.82645 0.87451 1.44536 1.73154 1.12613 1.05973 1.17571 0.94855 0.91414 0.85830 1.20554 1.06921 0.92979 0.98219 1.19999 1.01373 0.99842 0.88952 1.19254 1.03961 0.92076 0.85824 1.20379 1.03936 0.93829 0.94759 1.19587 1.07426 0.99830 0.90476 1.21775 1.02306 0.98106 0.92508 1.23699 0.94255 0.87541 0.96699 1.86805 1.64466 1.49798 1.21464 1.20639 0.77017 0.86670 0.84925 1.90324 1.51429 1.15815 1.84695 1.45970 1.54665 1.15542 1.08660 1.19815 0.96325 0.73848 0.99451 1.21338 0.97049 0.93157 1.46355 0.91610 1.24897 0.98459 0.95245 0.94703 1.69913 1.37300 0.97816 1.47043 0.86466 0.84029 0.78521 0.78760 1.19499 1.20674 1.20591 1.18042 0.94613 0.92820 0.87322 1.21150 1.02036 1.01948 0.90985 1.20884 0.98413 0.95138 0.97959 1.20991 1.03250 0.96131 0.97481 1.20995 0.99618 0.99355 0.92861 1.22427 0.99681 0.95102 1.02041 0.91673 0.92675 0.87670 0.75822 0.84568 0.85528 0.86106 0.89396 0.89374 0.91057 0.88183 0.93465 0.93396 0.92224 0.84196 0.86421 0.87093 0.86778 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.39 37.16 0.35 -2.50 16 2 C 0.14 2.37 1.93 -69.08 -0.13 2.24 16 3 H 0.11 1.85 4.50 -51.93 -0.23 1.62 16 4 N -0.73 -10.99 5.24 -53.21 -0.28 -11.27 16 5 C 0.21 3.00 6.65 -83.66 -0.56 2.44 16 6 C -0.16 -2.40 8.89 -39.47 -0.35 -2.75 16 7 C -0.08 -1.16 10.05 -39.32 -0.40 -1.56 16 8 C 0.03 0.48 7.03 -38.96 -0.27 0.21 16 9 C -0.13 -1.63 6.27 -104.10 -0.65 -2.28 16 10 C -0.15 -1.98 9.89 -39.51 -0.39 -2.37 16 11 C -0.11 -1.01 7.12 -26.51 -0.19 -1.20 16 12 C 0.05 0.48 8.01 38.05 0.30 0.79 16 13 O -0.31 -4.11 11.11 -20.57 -0.23 -4.34 16 14 C 0.52 9.93 6.78 -10.98 -0.07 9.85 16 15 O -0.54 -10.77 12.53 5.56 0.07 -10.70 16 16 N -0.53 -10.73 2.68 -114.74 -0.31 -11.04 16 17 C 0.22 4.86 4.27 -5.19 -0.02 4.84 16 18 C -0.54 -12.71 6.93 -34.44 -0.24 -12.95 16 19 H 0.07 1.62 7.77 -52.49 -0.41 1.21 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.88 -22.30 13.29 55.43 0.74 -21.57 16 22 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 26 C 0.17 3.35 6.48 -83.70 -0.54 2.81 16 27 C -0.14 -2.67 9.10 -39.39 -0.36 -3.03 16 28 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 29 C -0.16 -2.42 10.04 -39.55 -0.40 -2.82 16 30 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 31 C -0.17 -3.23 8.97 -39.39 -0.35 -3.59 16 32 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.01 5.61 -51.93 -0.29 1.72 16 35 H 0.40 5.96 7.82 -40.82 -0.32 5.65 16 36 H 0.14 2.01 6.05 -52.49 -0.32 1.70 16 37 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 1.09 6.66 -51.93 -0.35 0.74 16 44 H 0.05 1.05 5.73 -51.93 -0.30 0.75 16 45 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 46 H 0.14 2.81 6.23 -52.49 -0.33 2.49 16 47 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 49 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 50 H 0.17 3.28 4.73 -55.16 -0.26 3.02 16 LS Contribution 401.13 15.07 6.05 6.05 Total: -1.00 -26.78 401.13 -10.71 -37.50 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -6.56 Total: 15.59 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -5.17 Total: -14.51 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.15 Total: -43.88 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.16 Total: -15.04 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -26.78 -10.71 -37.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096436890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.516 kcal (2) G-P(sol) polarization free energy of solvation -26.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds